data_6DAB # _model_server_result.job_id jydgdHOayn7BhAVHMz05mA _model_server_result.datetime_utc '2024-11-24 16:05:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6DAB # _exptl.entry_id 6DAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 519.698 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl [(2R)-1-{[(2R)-1-oxo-3-phenyl-1-{[2-(pyridin-3-yl)ethyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DAB _cell.length_a 77.199 _cell.length_b 101.119 _cell.length_c 126.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 D N29 G0V . A G0V 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? # _chem_comp.formula 'C30 H37 N3 O3 S' _chem_comp.formula_weight 519.698 _chem_comp.id G0V _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl [(2R)-1-{[(2R)-1-oxo-3-phenyl-1-{[2-(pyridin-3-yl)ethyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 C02 G0V sing 83 n n C04 C02 G0V sing 84 n n C17 C18 G0V doub 85 n y C17 C16 G0V sing 86 n y C02 C01 G0V sing 87 n n C02 O05 G0V sing 88 n n C18 C19 G0V sing 89 n y O05 C06 G0V sing 90 n n C16 C15 G0V doub 91 n y O07 C06 G0V doub 92 n n C19 C14 G0V doub 93 n y C27 C28 G0V doub 94 n y C27 C26 G0V sing 95 n y C28 N29 G0V sing 96 n y C06 N08 G0V sing 97 n n C15 C14 G0V sing 98 n y C14 C13 G0V sing 99 n n C26 C25 G0V doub 100 n y N29 C30 G0V doub 101 n y N08 C09 G0V sing 102 n n C30 C25 G0V sing 103 n y C25 C24 G0V sing 104 n n C13 C12 G0V sing 105 n n C09 C31 G0V sing 106 n n C09 C10 G0V sing 107 n n C31 C32 G0V sing 108 n n C24 C23 G0V sing 109 n n C12 C20 G0V sing 110 n n C12 S11 G0V sing 111 n n C10 S11 G0V sing 112 n n C20 O21 G0V doub 113 n n C20 N22 G0V sing 114 n n N22 C23 G0V sing 115 n n C32 C33 G0V doub 116 n y C32 C37 G0V sing 117 n y C33 C34 G0V sing 118 n y C37 C36 G0V doub 119 n y C34 C35 G0V doub 120 n y C36 C35 G0V sing 121 n y C01 H1 G0V sing 122 n n C01 H2 G0V sing 123 n n C01 H3 G0V sing 124 n n C03 H4 G0V sing 125 n n C03 H5 G0V sing 126 n n C03 H6 G0V sing 127 n n C04 H7 G0V sing 128 n n C04 H8 G0V sing 129 n n C04 H9 G0V sing 130 n n C09 H10 G0V sing 131 n n C10 H11 G0V sing 132 n n C10 H12 G0V sing 133 n n C12 H13 G0V sing 134 n n C13 H14 G0V sing 135 n n C13 H15 G0V sing 136 n n C15 H16 G0V sing 137 n n C16 H17 G0V sing 138 n n C17 H18 G0V sing 139 n n C18 H19 G0V sing 140 n n C19 H20 G0V sing 141 n n C23 H21 G0V sing 142 n n C23 H22 G0V sing 143 n n C24 H23 G0V sing 144 n n C24 H24 G0V sing 145 n n C26 H25 G0V sing 146 n n C27 H26 G0V sing 147 n n C28 H27 G0V sing 148 n n C30 H28 G0V sing 149 n n C31 H29 G0V sing 150 n n C31 H30 G0V sing 151 n n C33 H31 G0V sing 152 n n C34 H32 G0V sing 153 n n C35 H33 G0V sing 154 n n C36 H34 G0V sing 155 n n C37 H35 G0V sing 156 n n N08 H36 G0V sing 157 n n N22 H37 G0V sing 158 n n # _atom_sites.entry_id 6DAB _atom_sites.fract_transf_matrix[1][1] 0.012954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 GOL A 1 602 605 GOL GOL . D 4 G0V A 1 603 700 G0V 280 . E 5 HOH A 1 701 9 HOH HOH . E 5 HOH A 2 702 8 HOH HOH . E 5 HOH A 3 703 10 HOH HOH . E 5 HOH A 4 704 5 HOH HOH . E 5 HOH A 5 705 7 HOH HOH . E 5 HOH A 6 706 1 HOH HOH . E 5 HOH A 7 707 3 HOH HOH . E 5 HOH A 8 708 6 HOH HOH . E 5 HOH A 9 709 4 HOH HOH . E 5 HOH A 10 710 2 HOH HOH . E 5 HOH A 11 711 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 G0V . . . D 4 -11.48 -34.006 -10.902 1 188.6 ? C01 G0V 603 A 1 HETATM 2 C C02 G0V . . . D 4 -12.594 -34.709 -11.709 1 183.45 ? C02 G0V 603 A 1 HETATM 3 C C03 G0V . . . D 4 -13.085 -33.738 -12.847 1 186.9 ? C03 G0V 603 A 1 HETATM 4 C C04 G0V . . . D 4 -12.041 -35.982 -12.385 1 187.22 ? C04 G0V 603 A 1 HETATM 5 C C06 G0V . . . D 4 -14.379 -34.222 -10 1 153.07 ? C06 G0V 603 A 1 HETATM 6 C C09 G0V . . . D 4 -15.082 -33.246 -7.829 1 141.86 ? C09 G0V 603 A 1 HETATM 7 C C10 G0V . . . D 4 -15.631 -33.984 -6.57 1 136.45 ? C10 G0V 603 A 1 HETATM 8 C C12 G0V . . . D 4 -18.515 -32.557 -6.634 1 121.11 ? C12 G0V 603 A 1 HETATM 9 C C13 G0V . . . D 4 -18.539 -33.35 -8.001 1 109.2 ? C13 G0V 603 A 1 HETATM 10 C C14 G0V . . . D 4 -19.014 -32.772 -9.305 1 108.22 ? C14 G0V 603 A 1 HETATM 11 C C15 G0V . . . D 4 -19.431 -31.459 -9.484 1 105.53 ? C15 G0V 603 A 1 HETATM 12 C C16 G0V . . . D 4 -19.833 -31.023 -10.756 1 113.61 ? C16 G0V 603 A 1 HETATM 13 C C17 G0V . . . D 4 -19.819 -31.88 -11.862 1 113.69 ? C17 G0V 603 A 1 HETATM 14 C C18 G0V . . . D 4 -19.406 -33.193 -11.696 1 104.28 ? C18 G0V 603 A 1 HETATM 15 C C19 G0V . . . D 4 -19.01 -33.618 -10.427 1 108.25 ? C19 G0V 603 A 1 HETATM 16 C C20 G0V . . . D 4 -18.671 -30.966 -6.424 1 120.85 ? C20 G0V 603 A 1 HETATM 17 C C23 G0V . . . D 4 -17.762 -28.571 -5.804 1 112.81 ? C23 G0V 603 A 1 HETATM 18 C C24 G0V . . . D 4 -17.867 -27.414 -6.79 1 100.49 ? C24 G0V 603 A 1 HETATM 19 C C25 G0V . . . D 4 -18.63 -27.583 -8.007 1 81.22 ? C25 G0V 603 A 1 HETATM 20 C C26 G0V . . . D 4 -17.978 -27.798 -9.213 1 76.35 ? C26 G0V 603 A 1 HETATM 21 C C27 G0V . . . D 4 -18.663 -27.964 -10.423 1 69.11 ? C27 G0V 603 A 1 HETATM 22 C C28 G0V . . . D 4 -20.056 -27.862 -10.344 1 79.87 ? C28 G0V 603 A 1 HETATM 23 C C30 G0V . . . D 4 -19.998 -27.517 -8.039 1 84.44 ? C30 G0V 603 A 1 HETATM 24 C C31 G0V . . . D 4 -14.064 -32.019 -7.51 1 139.06 ? C31 G0V 603 A 1 HETATM 25 C C32 G0V . . . D 4 -14.021 -31.281 -6.129 1 133.64 ? C32 G0V 603 A 1 HETATM 26 C C33 G0V . . . D 4 -14.29 -29.9 -6.017 1 131.91 ? C33 G0V 603 A 1 HETATM 27 C C34 G0V . . . D 4 -14.234 -29.216 -4.781 1 126.85 ? C34 G0V 603 A 1 HETATM 28 C C35 G0V . . . D 4 -13.893 -29.906 -3.615 1 125.22 ? C35 G0V 603 A 1 HETATM 29 C C36 G0V . . . D 4 -13.62 -31.268 -3.707 1 126.95 ? C36 G0V 603 A 1 HETATM 30 C C37 G0V . . . D 4 -13.667 -31.933 -4.945 1 126.6 ? C37 G0V 603 A 1 HETATM 31 N N08 G0V . . . D 4 -14.404 -34.292 -8.625 1 146.97 ? N08 G0V 603 A 1 HETATM 32 N N22 G0V . . . D 4 -17.637 -30.027 -6.17 1 107.54 ? N22 G0V 603 A 1 HETATM 33 N N29 G0V . . . D 4 -20.677 -27.656 -9.17 1 81.57 ? N29 G0V 603 A 1 HETATM 34 O O05 G0V . . . D 4 -13.704 -35.109 -10.812 1 168.46 ? O05 G0V 603 A 1 HETATM 35 O O07 G0V . . . D 4 -15.034 -33.286 -10.514 1 145.93 ? O07 G0V 603 A 1 HETATM 36 O O21 G0V . . . D 4 -19.84 -30.47 -6.342 1 121.89 ? O21 G0V 603 A 1 HETATM 37 S S11 G0V . . . D 4 -16.969 -33.068 -5.649 1 128.58 ? S11 G0V 603 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 37 #