data_6DAC
#
_model_server_result.job_id            He4lwNq7cXfLBpQogjXKRg 
_model_server_result.datetime_utc      '2024-11-24 15:28:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dac 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    6DAC 
#
_exptl.entry_id    6DAC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DAC 
_cell.length_a            76.889 
_cell.length_b            101.08 
_cell.length_c            126.319 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DAC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N29 FZV . A FZV 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 205 n n 
CHA C4D HEM doub 206 n n 
CHA HHA HEM sing 207 n n 
CHB C4A HEM sing 208 n n 
CHB C1B HEM doub 209 n n 
CHB HHB HEM sing 210 n n 
CHC C4B HEM sing 211 n n 
CHC C1C HEM doub 212 n n 
CHC HHC HEM sing 213 n n 
CHD C4C HEM doub 214 n n 
CHD C1D HEM sing 215 n n 
CHD HHD HEM sing 216 n n 
C1A C2A HEM doub 217 n y 
C1A NA HEM sing 218 n y 
C2A C3A HEM sing 219 n y 
C2A CAA HEM sing 220 n n 
C3A C4A HEM doub 221 n y 
C3A CMA HEM sing 222 n n 
C4A NA HEM sing 223 n y 
CMA HMA HEM sing 224 n n 
CMA HMAA HEM sing 225 n n 
CMA HMAB HEM sing 226 n n 
CAA CBA HEM sing 227 n n 
CAA HAA HEM sing 228 n n 
CAA HAAA HEM sing 229 n n 
CBA CGA HEM sing 230 n n 
CBA HBA HEM sing 231 n n 
CBA HBAA HEM sing 232 n n 
CGA O1A HEM doub 233 n n 
CGA O2A HEM sing 234 n n 
C1B C2B HEM sing 235 n n 
C1B NB HEM sing 236 n n 
C2B C3B HEM doub 237 n n 
C2B CMB HEM sing 238 n n 
C3B C4B HEM sing 239 n n 
C3B CAB HEM sing 240 n n 
C4B NB HEM doub 241 n n 
CMB HMB HEM sing 242 n n 
CMB HMBA HEM sing 243 n n 
CMB HMBB HEM sing 244 n n 
CAB CBB HEM doub 245 n n 
CAB HAB HEM sing 246 n n 
CBB HBB HEM sing 247 n n 
CBB HBBA HEM sing 248 n n 
C1C C2C HEM sing 249 n y 
C1C NC HEM sing 250 n y 
C2C C3C HEM doub 251 n y 
C2C CMC HEM sing 252 n n 
C3C C4C HEM sing 253 n y 
C3C CAC HEM sing 254 n n 
C4C NC HEM sing 255 n y 
CMC HMC HEM sing 256 n n 
CMC HMCA HEM sing 257 n n 
CMC HMCB HEM sing 258 n n 
CAC CBC HEM doub 259 n n 
CAC HAC HEM sing 260 n n 
CBC HBC HEM sing 261 n n 
CBC HBCA HEM sing 262 n n 
C1D C2D HEM sing 263 n n 
C1D ND HEM doub 264 n n 
C2D C3D HEM doub 265 n n 
C2D CMD HEM sing 266 n n 
C3D C4D HEM sing 267 n n 
C3D CAD HEM sing 268 n n 
C4D ND HEM sing 269 n n 
CMD HMD HEM sing 270 n n 
CMD HMDA HEM sing 271 n n 
CMD HMDB HEM sing 272 n n 
CAD CBD HEM sing 273 n n 
CAD HAD HEM sing 274 n n 
CAD HADA HEM sing 275 n n 
CBD CGD HEM sing 276 n n 
CBD HBD HEM sing 277 n n 
CBD HBDA HEM sing 278 n n 
CGD O1D HEM doub 279 n n 
CGD O2D HEM sing 280 n n 
O2A H2A HEM sing 281 n n 
O2D H2D HEM sing 282 n n 
FE NA HEM sing 283 n n 
FE NB HEM sing 284 n n 
FE NC HEM sing 285 n n 
FE ND HEM sing 286 n n 
#
_atom_sites.entry_id                     6DAC 
_atom_sites.fract_transf_matrix[1][1]    0.013006 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009893 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007916 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 FZV A 1 602 700 FZV 285 . 
D 4 HOH A 1 701 3 HOH HOH . 
D 4 HOH A 2 702 1 HOH HOH . 
D 4 HOH A 3 703 2 HOH HOH . 
D 4 HOH A 4 704 8 HOH HOH . 
D 4 HOH A 5 705 4 HOH HOH . 
D 4 HOH A 6 706 7 HOH HOH . 
D 4 HOH A 7 707 6 HOH HOH . 
D 4 HOH A 8 708 9 HOH HOH . 
D 4 HOH A 9 709 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.297 -19.804 -9.22 1 59.63 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -16.013 -22.548 -13.169 1 62.73 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -16.544 -26.358 -10.297 1 61.25 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -15.568 -23.754 -6.371 1 57.93 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -15.459 -20.208 -10.537 1 71.63 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -15.395 -19.363 -11.713 1 74.52 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -15.573 -20.15 -12.782 1 70.44 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -15.773 -21.493 -12.327 1 59.62 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -15.594 -19.771 -14.266 1 54.17 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -15.129 -17.846 -11.736 1 56.3 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -13.616 -17.673 -11.816 1 62.35 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -13.278 -16.235 -11.994 1 65.5 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -12.245 -15.99 -12.674 1 67.79 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -14.059 -15.366 -11.514 1 60.07 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -16.227 -23.839 -12.733 1 59.88 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -16.508 -24.984 -13.579 1 61.13 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -16.667 -26.028 -12.761 1 68.4 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -16.469 -25.557 -11.402 1 60.04 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -16.597 -24.917 -15.129 1 52.73 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -16.959 -27.518 -13.047 1 80.32 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -16.93 -28.086 -14.252 1 73.25 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.244 -25.991 -9.012 1 71.92 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -16.109 -26.935 -7.924 1 73.26 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -15.843 -26.258 -6.817 1 71.53 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -15.799 -24.843 -7.175 1 67.7 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.253 -28.471 -8.016 1 64.22 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -15.631 -26.984 -5.474 1 61.75 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -15.423 -26.321 -4.358 1 81.95 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -15.438 -22.458 -6.809 1 63.04 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -15.181 -21.323 -5.942 1 67.18 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -15.113 -20.23 -6.709 1 69.24 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -15.299 -20.633 -8.103 1 62.9 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -15.069 -21.421 -4.402 1 57.19 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -14.853 -18.784 -6.236 1 64.16 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -13.347 -18.537 -6.147 1 62.88 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -13.141 -17.27 -5.337 1 76.59 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -12.09 -17.128 -4.649 1 69.31 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -14.061 -16.406 -5.366 1 64.56 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -15.702 -21.508 -10.953 1 65.33 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -16.203 -24.223 -11.412 1 62.16 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -16.062 -24.723 -8.521 1 73.63 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -15.502 -22.003 -8.119 1 68.13 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -15.717 -23.114 -9.719 1 68.08 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           375 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#