data_6DAG # _model_server_result.job_id h5D-tqC_pckqkfnVTTZe5w _model_server_result.datetime_utc '2024-11-13 08:10:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6DAG # _exptl.entry_id 6DAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DAG _cell.length_a 76.789 _cell.length_b 102.35 _cell.length_c 125.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N29 G0Y . A G0Y 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 205 n n CHA C4D HEM doub 206 n n CHA HHA HEM sing 207 n n CHB C4A HEM sing 208 n n CHB C1B HEM doub 209 n n CHB HHB HEM sing 210 n n CHC C4B HEM sing 211 n n CHC C1C HEM doub 212 n n CHC HHC HEM sing 213 n n CHD C4C HEM doub 214 n n CHD C1D HEM sing 215 n n CHD HHD HEM sing 216 n n C1A C2A HEM doub 217 n y C1A NA HEM sing 218 n y C2A C3A HEM sing 219 n y C2A CAA HEM sing 220 n n C3A C4A HEM doub 221 n y C3A CMA HEM sing 222 n n C4A NA HEM sing 223 n y CMA HMA HEM sing 224 n n CMA HMAA HEM sing 225 n n CMA HMAB HEM sing 226 n n CAA CBA HEM sing 227 n n CAA HAA HEM sing 228 n n CAA HAAA HEM sing 229 n n CBA CGA HEM sing 230 n n CBA HBA HEM sing 231 n n CBA HBAA HEM sing 232 n n CGA O1A HEM doub 233 n n CGA O2A HEM sing 234 n n C1B C2B HEM sing 235 n n C1B NB HEM sing 236 n n C2B C3B HEM doub 237 n n C2B CMB HEM sing 238 n n C3B C4B HEM sing 239 n n C3B CAB HEM sing 240 n n C4B NB HEM doub 241 n n CMB HMB HEM sing 242 n n CMB HMBA HEM sing 243 n n CMB HMBB HEM sing 244 n n CAB CBB HEM doub 245 n n CAB HAB HEM sing 246 n n CBB HBB HEM sing 247 n n CBB HBBA HEM sing 248 n n C1C C2C HEM sing 249 n y C1C NC HEM sing 250 n y C2C C3C HEM doub 251 n y C2C CMC HEM sing 252 n n C3C C4C HEM sing 253 n y C3C CAC HEM sing 254 n n C4C NC HEM sing 255 n y CMC HMC HEM sing 256 n n CMC HMCA HEM sing 257 n n CMC HMCB HEM sing 258 n n CAC CBC HEM doub 259 n n CAC HAC HEM sing 260 n n CBC HBC HEM sing 261 n n CBC HBCA HEM sing 262 n n C1D C2D HEM sing 263 n n C1D ND HEM doub 264 n n C2D C3D HEM doub 265 n n C2D CMD HEM sing 266 n n C3D C4D HEM sing 267 n n C3D CAD HEM sing 268 n n C4D ND HEM sing 269 n n CMD HMD HEM sing 270 n n CMD HMDA HEM sing 271 n n CMD HMDB HEM sing 272 n n CAD CBD HEM sing 273 n n CAD HAD HEM sing 274 n n CAD HADA HEM sing 275 n n CBD CGD HEM sing 276 n n CBD HBD HEM sing 277 n n CBD HBDA HEM sing 278 n n CGD O1D HEM doub 279 n n CGD O2D HEM sing 280 n n O2A H2A HEM sing 281 n n O2D H2D HEM sing 282 n n FE NA HEM sing 283 n n FE NB HEM sing 284 n n FE NC HEM sing 285 n n FE ND HEM sing 286 n n # _atom_sites.entry_id 6DAG _atom_sites.fract_transf_matrix[1][1] 0.013023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 G0Y A 1 602 700 G0Y 032 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -23.206 -31.083 -9.003 1 66.26 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -22.767 -28.413 -12.984 1 53.61 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -21.911 -24.744 -10.063 1 67.07 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -23.105 -27.223 -6.086 1 56.88 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -23.107 -30.679 -10.284 1 65.26 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -23.14 -31.568 -11.397 1 63.26 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -23.038 -30.849 -12.5 1 61.72 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -22.888 -29.47 -12.119 1 60.85 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -23.055 -31.352 -13.948 1 65.54 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -23.356 -33.071 -11.293 1 70.54 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -24.836 -33.253 -11.656 1 76.26 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -25.135 -34.701 -11.916 1 73.85 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -26.27 -34.98 -12.368 1 75.94 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -24.241 -35.552 -11.668 1 82.83 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -22.464 -27.156 -12.532 1 60.59 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -22.135 -25.996 -13.354 1 64.42 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -21.857 -24.994 -12.503 1 62.54 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -22.079 -25.483 -11.173 1 60.84 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -22.096 -26.017 -14.91 1 59.93 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -21.497 -23.524 -12.718 1 72.5 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -21.761 -22.927 -13.874 1 75.41 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -22.245 -25.094 -8.79 1 77.93 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -22.396 -24.118 -7.757 1 81.47 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -22.722 -24.738 -6.643 1 75.75 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -22.797 -26.173 -6.928 1 72.37 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -22.202 -22.59 -7.911 1 82.61 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -22.954 -23.888 -5.374 1 72.26 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -22.743 -24.316 -4.14 1 67.94 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -23.167 -28.507 -6.574 1 65.21 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -23.287 -29.707 -5.764 1 70.91 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -23.322 -30.775 -6.574 1 62.88 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -23.209 -30.266 -7.923 1 63.65 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -23.375 -29.726 -4.224 1 74.82 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -23.45 -32.265 -6.165 1 53.3 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -24.921 -32.625 -6.07 1 68.75 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -25.209 -33.832 -5.237 1 80.77 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -26.221 -33.811 -4.533 1 87.25 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -24.463 -34.82 -5.246 1 87.61 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -22.957 -29.41 -10.746 1 66.66 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -22.424 -26.792 -11.208 1 55.83 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -22.494 -26.339 -8.272 1 76.66 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -23.137 -28.897 -7.906 1 66.49 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -22.94 -27.785 -9.633 1 59.78 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #