data_6DAG
#
_model_server_result.job_id            9gJ78vVJr4NXfFprtlH59A 
_model_server_result.datetime_utc      '2024-11-24 17:08:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dag 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    6DAG 
#
_exptl.entry_id    6DAG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              519.698 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'tert-butyl [(2R)-1-{[(2S)-1-oxo-3-phenyl-1-{[2-(pyridin-3-yl)ethyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DAG 
_cell.length_a            76.789 
_cell.length_b            102.35 
_cell.length_c            125.56 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DAG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N29 G0Y . A G0Y 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
#
_chem_comp.formula           'C30 H37 N3 O3 S' 
_chem_comp.formula_weight    519.698 
_chem_comp.id                G0Y 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'tert-butyl [(2R)-1-{[(2S)-1-oxo-3-phenyl-1-{[2-(pyridin-3-yl)ethyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C36 C37 G0Y doub 83 n y 
C36 C35 G0Y sing 84 n y 
C37 C32 G0Y sing 85 n y 
C28 C27 G0Y doub 86 n y 
C28 N29 G0Y sing 87 n y 
C35 C34 G0Y doub 88 n y 
C27 C26 G0Y sing 89 n y 
N29 C30 G0Y doub 90 n y 
C32 C31 G0Y sing 91 n n 
C32 C33 G0Y doub 92 n y 
C34 C33 G0Y sing 93 n y 
C26 C25 G0Y doub 94 n y 
C31 C09 G0Y sing 95 n n 
C30 C25 G0Y sing 96 n y 
O07 C06 G0Y doub 97 n n 
C25 C24 G0Y sing 98 n n 
S11 C10 G0Y sing 99 n n 
S11 C12 G0Y sing 100 n n 
C09 C10 G0Y sing 101 n n 
C09 N08 G0Y sing 102 n n 
C06 N08 G0Y sing 103 n n 
C06 O05 G0Y sing 104 n n 
N22 C23 G0Y sing 105 n n 
N22 C20 G0Y sing 106 n n 
C13 C12 G0Y sing 107 n n 
C13 C14 G0Y sing 108 n n 
C24 C23 G0Y sing 109 n n 
C12 C20 G0Y sing 110 n n 
C03 C02 G0Y sing 111 n n 
C01 C02 G0Y sing 112 n n 
C20 O21 G0Y doub 113 n n 
C02 O05 G0Y sing 114 n n 
C02 C04 G0Y sing 115 n n 
C14 C15 G0Y doub 116 n y 
C14 C19 G0Y sing 117 n y 
C15 C16 G0Y sing 118 n y 
C19 C18 G0Y doub 119 n y 
C16 C17 G0Y doub 120 n y 
C18 C17 G0Y sing 121 n y 
C10 H1 G0Y sing 122 n n 
C10 H2 G0Y sing 123 n n 
C15 H3 G0Y sing 124 n n 
C17 H4 G0Y sing 125 n n 
C24 H5 G0Y sing 126 n n 
C24 H6 G0Y sing 127 n n 
C01 H7 G0Y sing 128 n n 
C01 H8 G0Y sing 129 n n 
C01 H9 G0Y sing 130 n n 
C04 H10 G0Y sing 131 n n 
C04 H11 G0Y sing 132 n n 
C04 H12 G0Y sing 133 n n 
C16 H13 G0Y sing 134 n n 
C18 H14 G0Y sing 135 n n 
C23 H15 G0Y sing 136 n n 
C23 H16 G0Y sing 137 n n 
C31 H17 G0Y sing 138 n n 
C31 H18 G0Y sing 139 n n 
C33 H19 G0Y sing 140 n n 
C09 H20 G0Y sing 141 n n 
C12 H21 G0Y sing 142 n n 
C03 H22 G0Y sing 143 n n 
C03 H23 G0Y sing 144 n n 
C03 H24 G0Y sing 145 n n 
C13 H25 G0Y sing 146 n n 
C13 H26 G0Y sing 147 n n 
C19 H27 G0Y sing 148 n n 
C26 H28 G0Y sing 149 n n 
C27 H29 G0Y sing 150 n n 
C28 H30 G0Y sing 151 n n 
C30 H31 G0Y sing 152 n n 
C34 H32 G0Y sing 153 n n 
C35 H33 G0Y sing 154 n n 
C36 H34 G0Y sing 155 n n 
C37 H35 G0Y sing 156 n n 
N08 H36 G0Y sing 157 n n 
N22 H37 G0Y sing 158 n n 
#
_atom_sites.entry_id                     6DAG 
_atom_sites.fract_transf_matrix[1][1]    0.013023 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007964 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 G0Y A 1 602 700 G0Y 032 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 G0Y . . . C 3 -15.401 -34.945 -7.186 1 174.51 ? C10 G0Y 602 A 1 
HETATM 2 C C15 G0Y . . . C 3 -12.074 -30.754 -4.638 1 146.63 ? C15 G0Y 602 A 1 
HETATM 3 C C17 G0Y . . . C 3 -12.619 -31.489 -2.388 1 150.28 ? C17 G0Y 602 A 1 
HETATM 4 C C20 G0Y . . . C 3 -16.43 -31.656 -6.122 1 135.91 ? C20 G0Y 602 A 1 
HETATM 5 C C24 G0Y . . . C 3 -18.631 -28.675 -6.448 1 85.19 ? C24 G0Y 602 A 1 
HETATM 6 C C01 G0Y . . . C 3 -15.911 -39.117 -6.274 1 180.91 ? C01 G0Y 602 A 1 
HETATM 7 C C02 G0Y . . . C 3 -17.328 -39.004 -5.653 1 181.25 ? C02 G0Y 602 A 1 
HETATM 8 C C04 G0Y . . . C 3 -17.283 -39.666 -4.215 1 185.12 ? C04 G0Y 602 A 1 
HETATM 9 C C16 G0Y . . . C 3 -11.716 -30.942 -3.297 1 149.94 ? C16 G0Y 602 A 1 
HETATM 10 C C06 G0Y . . . C 3 -17.66 -36.794 -6.796 1 171.22 ? C06 G0Y 602 A 1 
HETATM 11 C C18 G0Y . . . C 3 -13.868 -31.862 -2.782 1 147.46 ? C18 G0Y 602 A 1 
HETATM 12 C C23 G0Y . . . C 3 -18.384 -30.132 -6.296 1 101.81 ? C23 G0Y 602 A 1 
HETATM 13 C C31 G0Y . . . C 3 -17.026 -34.445 -8.912 1 143.98 ? C31 G0Y 602 A 1 
HETATM 14 C C32 G0Y . . . C 3 -18.095 -33.635 -9.376 1 128.08 ? C32 G0Y 602 A 1 
HETATM 15 C C33 G0Y . . . C 3 -18.704 -32.703 -8.544 1 122.74 ? C33 G0Y 602 A 1 
HETATM 16 C C09 G0Y . . . C 3 -16.852 -34.517 -7.406 1 162.25 ? C09 G0Y 602 A 1 
HETATM 17 C C12 G0Y . . . C 3 -14.928 -32.137 -6.414 1 155.81 ? C12 G0Y 602 A 1 
HETATM 18 C C03 G0Y . . . C 3 -18.403 -39.789 -6.409 1 179.11 ? C03 G0Y 602 A 1 
HETATM 19 C C13 G0Y . . . C 3 -13.887 -31.001 -6.473 1 150.73 ? C13 G0Y 602 A 1 
HETATM 20 C C14 G0Y . . . C 3 -13.358 -31.113 -5.067 1 147.41 ? C14 G0Y 602 A 1 
HETATM 21 C C19 G0Y . . . C 3 -14.21 -31.671 -4.1 1 146.81 ? C19 G0Y 602 A 1 
HETATM 22 C C25 G0Y . . . C 3 -19.015 -28.548 -7.853 1 67.88 ? C25 G0Y 602 A 1 
HETATM 23 C C26 G0Y . . . C 3 -18.113 -28.574 -8.912 1 60.53 ? C26 G0Y 602 A 1 
HETATM 24 C C27 G0Y . . . C 3 -18.526 -28.481 -10.242 1 63.44 ? C27 G0Y 602 A 1 
HETATM 25 C C28 G0Y . . . C 3 -19.906 -28.394 -10.467 1 78.32 ? C28 G0Y 602 A 1 
HETATM 26 C C30 G0Y . . . C 3 -20.352 -28.491 -8.193 1 72.31 ? C30 G0Y 602 A 1 
HETATM 27 C C34 G0Y . . . C 3 -19.713 -31.92 -9.002 1 118.23 ? C34 G0Y 602 A 1 
HETATM 28 C C35 G0Y . . . C 3 -20.12 -32.072 -10.304 1 118.37 ? C35 G0Y 602 A 1 
HETATM 29 C C36 G0Y . . . C 3 -19.518 -33.013 -11.142 1 118.68 ? C36 G0Y 602 A 1 
HETATM 30 C C37 G0Y . . . C 3 -18.507 -33.791 -10.673 1 119.23 ? C37 G0Y 602 A 1 
HETATM 31 N N08 G0Y . . . C 3 -17.865 -35.417 -6.724 1 168.01 ? N08 G0Y 602 A 1 
HETATM 32 N N22 G0Y . . . C 3 -17.015 -30.534 -6.659 1 115.8 ? N22 G0Y 602 A 1 
HETATM 33 N N29 G0Y . . . C 3 -20.786 -28.396 -9.436 1 76.21 ? N29 G0Y 602 A 1 
HETATM 34 O O05 G0Y . . . C 3 -17.693 -37.562 -5.581 1 178.28 ? O05 G0Y 602 A 1 
HETATM 35 O O07 G0Y . . . C 3 -17.448 -37.303 -7.896 1 168.79 ? O07 G0Y 602 A 1 
HETATM 36 O O21 G0Y . . . C 3 -17.123 -32.326 -5.264 1 135.05 ? O21 G0Y 602 A 1 
HETATM 37 S S11 G0Y . . . C 3 -14.636 -33.405 -7.761 1 180.51 ? S11 G0Y 602 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           37 
#