data_6DAJ
#
_model_server_result.job_id            Vm1-8pWNhz3fjE719roD_Q 
_model_server_result.datetime_utc      '2024-11-13 06:27:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6daj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    6DAJ 
#
_exptl.entry_id    6DAJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              519.698 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'tert-butyl [(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[2-(pyridin-3-yl)ethyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DAJ 
_cell.length_a            76.639 
_cell.length_b            101.81 
_cell.length_c            125.76 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DAJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CE MET 351 A MET 371 1_555 D O1 GOL . A GOL 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? 
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N29 FZV . A FZV 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
#
_chem_comp.formula           'C30 H37 N3 O3 S' 
_chem_comp.formula_weight    519.698 
_chem_comp.id                FZV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'tert-butyl [(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[2-(pyridin-3-yl)ethyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C36 C35 FZV doub 83 n y 
C36 C37 FZV sing 84 n y 
C03 C02 FZV sing 85 n n 
C35 C34 FZV sing 86 n y 
C28 C27 FZV doub 87 n y 
C28 N29 FZV sing 88 n y 
C37 C32 FZV doub 89 n y 
C27 C26 FZV sing 90 n y 
C04 C02 FZV sing 91 n n 
C02 C01 FZV sing 92 n n 
C02 O05 FZV sing 93 n n 
N29 C30 FZV doub 94 n y 
C34 C33 FZV doub 95 n y 
C32 C33 FZV sing 96 n y 
C32 C31 FZV sing 97 n n 
O05 C06 FZV sing 98 n n 
N08 C06 FZV sing 99 n n 
N08 C09 FZV sing 100 n n 
C26 C25 FZV doub 101 n y 
C06 O07 FZV doub 102 n n 
C30 C25 FZV sing 103 n y 
C25 C24 FZV sing 104 n n 
C31 C09 FZV sing 105 n n 
C09 C10 FZV sing 106 n n 
C16 C15 FZV doub 107 n y 
C16 C17 FZV sing 108 n y 
C15 C14 FZV sing 109 n y 
N22 C23 FZV sing 110 n n 
N22 C20 FZV sing 111 n n 
C24 C23 FZV sing 112 n n 
C10 S11 FZV sing 113 n n 
C12 C20 FZV sing 114 n n 
C12 S11 FZV sing 115 n n 
C12 C13 FZV sing 116 n n 
C20 O21 FZV doub 117 n n 
C17 C18 FZV doub 118 n y 
C14 C13 FZV sing 119 n n 
C14 C19 FZV doub 120 n y 
C18 C19 FZV sing 121 n y 
C01 H1 FZV sing 122 n n 
C01 H2 FZV sing 123 n n 
C01 H3 FZV sing 124 n n 
C03 H4 FZV sing 125 n n 
C03 H5 FZV sing 126 n n 
C03 H6 FZV sing 127 n n 
C04 H7 FZV sing 128 n n 
C04 H8 FZV sing 129 n n 
C04 H9 FZV sing 130 n n 
C09 H10 FZV sing 131 n n 
C10 H11 FZV sing 132 n n 
C10 H12 FZV sing 133 n n 
C12 H13 FZV sing 134 n n 
C13 H14 FZV sing 135 n n 
C13 H15 FZV sing 136 n n 
C15 H16 FZV sing 137 n n 
C16 H17 FZV sing 138 n n 
C17 H18 FZV sing 139 n n 
C18 H19 FZV sing 140 n n 
C19 H20 FZV sing 141 n n 
C23 H21 FZV sing 142 n n 
C23 H22 FZV sing 143 n n 
C24 H23 FZV sing 144 n n 
C24 H24 FZV sing 145 n n 
C26 H25 FZV sing 146 n n 
C27 H26 FZV sing 147 n n 
C28 H27 FZV sing 148 n n 
C30 H28 FZV sing 149 n n 
C31 H29 FZV sing 150 n n 
C31 H30 FZV sing 151 n n 
C33 H31 FZV sing 152 n n 
C34 H32 FZV sing 153 n n 
C35 H33 FZV sing 154 n n 
C36 H34 FZV sing 155 n n 
C37 H35 FZV sing 156 n n 
N08 H36 FZV sing 157 n n 
N22 H37 FZV sing 158 n n 
#
_atom_sites.entry_id                     6DAJ 
_atom_sites.fract_transf_matrix[1][1]    0.013048 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007952 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 FZV A 1 602 700 FZV 137 . 
D 4 GOL A 1 603 701 GOL GOL . 
E 5 GLN A 1 604 800 GLN GLM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 FZV . . . C 3 -10.745 -37.027 -8.963 1 185.28 ? C01 FZV 602 A 1 
HETATM 2 C C02 FZV . . . C 3 -12.05 -37.247 -9.745 1 182.59 ? C02 FZV 602 A 1 
HETATM 3 C C03 FZV . . . C 3 -12.084 -36.432 -11.052 1 182.68 ? C03 FZV 602 A 1 
HETATM 4 C C04 FZV . . . C 3 -12.137 -38.785 -10.125 1 179.49 ? C04 FZV 602 A 1 
HETATM 5 C C06 FZV . . . C 3 -13.808 -35.574 -8.845 1 176.27 ? C06 FZV 602 A 1 
HETATM 6 C C09 FZV . . . C 3 -15.966 -34.527 -7.79 1 143.65 ? C09 FZV 602 A 1 
HETATM 7 C C10 FZV . . . C 3 -15.333 -34.967 -6.378 1 144.9 ? C10 FZV 602 A 1 
HETATM 8 C C12 FZV . . . C 3 -14.883 -31.839 -6.111 1 143.29 ? C12 FZV 602 A 1 
HETATM 9 C C13 FZV . . . C 3 -14.201 -30.759 -5.237 1 146.29 ? C13 FZV 602 A 1 
HETATM 10 C C14 FZV . . . C 3 -12.701 -30.788 -5.422 1 154.47 ? C14 FZV 602 A 1 
HETATM 11 C C15 FZV . . . C 3 -12.124 -30.483 -6.682 1 158.54 ? C15 FZV 602 A 1 
HETATM 12 C C16 FZV . . . C 3 -10.704 -30.52 -6.878 1 164.23 ? C16 FZV 602 A 1 
HETATM 13 C C17 FZV . . . C 3 -9.851 -30.877 -5.793 1 165.88 ? C17 FZV 602 A 1 
HETATM 14 C C18 FZV . . . C 3 -10.429 -31.193 -4.532 1 168.2 ? C18 FZV 602 A 1 
HETATM 15 C C19 FZV . . . C 3 -11.853 -31.152 -4.353 1 163.24 ? C19 FZV 602 A 1 
HETATM 16 C C20 FZV . . . C 3 -16.362 -31.768 -6 1 124.97 ? C20 FZV 602 A 1 
HETATM 17 C C23 FZV . . . C 3 -18.568 -30.737 -6.504 1 93.65 ? C23 FZV 602 A 1 
HETATM 18 C C24 FZV . . . C 3 -18.898 -29.246 -6.555 1 95.78 ? C24 FZV 602 A 1 
HETATM 19 C C25 FZV . . . C 3 -19.019 -28.833 -7.989 1 86.73 ? C25 FZV 602 A 1 
HETATM 20 C C26 FZV . . . C 3 -17.942 -28.945 -8.894 1 78.83 ? C26 FZV 602 A 1 
HETATM 21 C C27 FZV . . . C 3 -18.163 -28.554 -10.243 1 72.95 ? C27 FZV 602 A 1 
HETATM 22 C C28 FZV . . . C 3 -19.45 -28.091 -10.63 1 84.93 ? C28 FZV 602 A 1 
HETATM 23 C C30 FZV . . . C 3 -20.263 -28.383 -8.447 1 79.11 ? C30 FZV 602 A 1 
HETATM 24 C C31 FZV . . . C 3 -17.534 -34.817 -7.835 1 125.06 ? C31 FZV 602 A 1 
HETATM 25 C C32 FZV . . . C 3 -18.27 -34.003 -8.96 1 109.74 ? C32 FZV 602 A 1 
HETATM 26 C C33 FZV . . . C 3 -19.295 -33.084 -8.651 1 96.08 ? C33 FZV 602 A 1 
HETATM 27 C C34 FZV . . . C 3 -19.936 -32.336 -9.673 1 87.86 ? C34 FZV 602 A 1 
HETATM 28 C C35 FZV . . . C 3 -19.579 -32.502 -11.022 1 89.59 ? C35 FZV 602 A 1 
HETATM 29 C C36 FZV . . . C 3 -18.566 -33.421 -11.351 1 97.56 ? C36 FZV 602 A 1 
HETATM 30 C C37 FZV . . . C 3 -17.914 -34.164 -10.315 1 104.49 ? C37 FZV 602 A 1 
HETATM 31 N N08 FZV . . . C 3 -15.21 -35.208 -8.909 1 162.7 ? N08 FZV 602 A 1 
HETATM 32 N N22 FZV . . . C 3 -17.157 -30.786 -6.649 1 97.95 ? N22 FZV 602 A 1 
HETATM 33 N N29 FZV . . . C 3 -20.455 -28.034 -9.712 1 74.29 ? N29 FZV 602 A 1 
HETATM 34 O O05 FZV . . . C 3 -13.266 -36.914 -8.944 1 184.95 ? O05 FZV 602 A 1 
HETATM 35 O O07 FZV . . . C 3 -12.955 -34.638 -8.658 1 180.1 ? O07 FZV 602 A 1 
HETATM 36 O O21 FZV . . . C 3 -17.007 -32.624 -5.3 1 125.87 ? O21 FZV 602 A 1 
HETATM 37 S S11 FZV . . . C 3 -14.309 -33.558 -5.569 1 150.53 ? S11 FZV 602 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           37 
#