data_6DAK # _model_server_result.job_id hB1cC4Q9Xwhp7sXdjea11A _model_server_result.datetime_utc '2024-11-21 17:06:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6DAK # _exptl.entry_id 6DAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DAK _cell.length_a 80.969 _cell.length_b 86.191 _cell.length_c 40.528 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6DAK _atom_sites.fract_transf_matrix[1][1] 0.01235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G1Y A 1 401 401 G1Y KOJ . C 3 DMS A 1 402 501 DMS DMS . D 4 HOH A 1 501 260 HOH HOH . D 4 HOH A 2 502 85 HOH HOH . D 4 HOH A 3 503 250 HOH HOH . D 4 HOH A 4 504 292 HOH HOH . D 4 HOH A 5 505 177 HOH HOH . D 4 HOH A 6 506 249 HOH HOH . D 4 HOH A 7 507 148 HOH HOH . D 4 HOH A 8 508 293 HOH HOH . D 4 HOH A 9 509 196 HOH HOH . D 4 HOH A 10 510 134 HOH HOH . D 4 HOH A 11 511 302 HOH HOH . D 4 HOH A 12 512 304 HOH HOH . D 4 HOH A 13 513 39 HOH HOH . D 4 HOH A 14 514 190 HOH HOH . D 4 HOH A 15 515 135 HOH HOH . D 4 HOH A 16 516 231 HOH HOH . D 4 HOH A 17 517 116 HOH HOH . D 4 HOH A 18 518 257 HOH HOH . D 4 HOH A 19 519 69 HOH HOH . D 4 HOH A 20 520 242 HOH HOH . D 4 HOH A 21 521 22 HOH HOH . D 4 HOH A 22 522 96 HOH HOH . D 4 HOH A 23 523 206 HOH HOH . D 4 HOH A 24 524 67 HOH HOH . D 4 HOH A 25 525 126 HOH HOH . D 4 HOH A 26 526 188 HOH HOH . D 4 HOH A 27 527 182 HOH HOH . D 4 HOH A 28 528 5 HOH HOH . D 4 HOH A 29 529 154 HOH HOH . D 4 HOH A 30 530 307 HOH HOH . D 4 HOH A 31 531 35 HOH HOH . D 4 HOH A 32 532 100 HOH HOH . D 4 HOH A 33 533 1 HOH HOH . D 4 HOH A 34 534 252 HOH HOH . D 4 HOH A 35 535 142 HOH HOH . D 4 HOH A 36 536 13 HOH HOH . D 4 HOH A 37 537 150 HOH HOH . D 4 HOH A 38 538 261 HOH HOH . D 4 HOH A 39 539 44 HOH HOH . D 4 HOH A 40 540 218 HOH HOH . D 4 HOH A 41 541 37 HOH HOH . D 4 HOH A 42 542 74 HOH HOH . D 4 HOH A 43 543 147 HOH HOH . D 4 HOH A 44 544 105 HOH HOH . D 4 HOH A 45 545 80 HOH HOH . D 4 HOH A 46 546 168 HOH HOH . D 4 HOH A 47 547 254 HOH HOH . D 4 HOH A 48 548 52 HOH HOH . D 4 HOH A 49 549 79 HOH HOH . D 4 HOH A 50 550 301 HOH HOH . D 4 HOH A 51 551 47 HOH HOH . D 4 HOH A 52 552 2 HOH HOH . D 4 HOH A 53 553 3 HOH HOH . D 4 HOH A 54 554 192 HOH HOH . D 4 HOH A 55 555 70 HOH HOH . D 4 HOH A 56 556 81 HOH HOH . D 4 HOH A 57 557 256 HOH HOH . D 4 HOH A 58 558 245 HOH HOH . D 4 HOH A 59 559 219 HOH HOH . D 4 HOH A 60 560 48 HOH HOH . D 4 HOH A 61 561 233 HOH HOH . D 4 HOH A 62 562 164 HOH HOH . D 4 HOH A 63 563 73 HOH HOH . D 4 HOH A 64 564 119 HOH HOH . D 4 HOH A 65 565 113 HOH HOH . D 4 HOH A 66 566 167 HOH HOH . D 4 HOH A 67 567 172 HOH HOH . D 4 HOH A 68 568 161 HOH HOH . D 4 HOH A 69 569 243 HOH HOH . D 4 HOH A 70 570 17 HOH HOH . D 4 HOH A 71 571 138 HOH HOH . D 4 HOH A 72 572 316 HOH HOH . D 4 HOH A 73 573 160 HOH HOH . D 4 HOH A 74 574 121 HOH HOH . D 4 HOH A 75 575 104 HOH HOH . D 4 HOH A 76 576 248 HOH HOH . D 4 HOH A 77 577 129 HOH HOH . D 4 HOH A 78 578 55 HOH HOH . D 4 HOH A 79 579 20 HOH HOH . D 4 HOH A 80 580 7 HOH HOH . D 4 HOH A 81 581 45 HOH HOH . D 4 HOH A 82 582 66 HOH HOH . D 4 HOH A 83 583 19 HOH HOH . D 4 HOH A 84 584 122 HOH HOH . D 4 HOH A 85 585 75 HOH HOH . D 4 HOH A 86 586 139 HOH HOH . D 4 HOH A 87 587 124 HOH HOH . D 4 HOH A 88 588 94 HOH HOH . D 4 HOH A 89 589 24 HOH HOH . D 4 HOH A 90 590 118 HOH HOH . D 4 HOH A 91 591 51 HOH HOH . D 4 HOH A 92 592 91 HOH HOH . D 4 HOH A 93 593 30 HOH HOH . D 4 HOH A 94 594 56 HOH HOH . D 4 HOH A 95 595 98 HOH HOH . D 4 HOH A 96 596 327 HOH HOH . D 4 HOH A 97 597 15 HOH HOH . D 4 HOH A 98 598 99 HOH HOH . D 4 HOH A 99 599 144 HOH HOH . D 4 HOH A 100 600 6 HOH HOH . D 4 HOH A 101 601 171 HOH HOH . D 4 HOH A 102 602 128 HOH HOH . D 4 HOH A 103 603 95 HOH HOH . D 4 HOH A 104 604 102 HOH HOH . D 4 HOH A 105 605 185 HOH HOH . D 4 HOH A 106 606 230 HOH HOH . D 4 HOH A 107 607 114 HOH HOH . D 4 HOH A 108 608 237 HOH HOH . D 4 HOH A 109 609 110 HOH HOH . D 4 HOH A 110 610 50 HOH HOH . D 4 HOH A 111 611 212 HOH HOH . D 4 HOH A 112 612 23 HOH HOH . D 4 HOH A 113 613 228 HOH HOH . D 4 HOH A 114 614 14 HOH HOH . D 4 HOH A 115 615 271 HOH HOH . D 4 HOH A 116 616 72 HOH HOH . D 4 HOH A 117 617 54 HOH HOH . D 4 HOH A 118 618 109 HOH HOH . D 4 HOH A 119 619 103 HOH HOH . D 4 HOH A 120 620 26 HOH HOH . D 4 HOH A 121 621 221 HOH HOH . D 4 HOH A 122 622 117 HOH HOH . D 4 HOH A 123 623 246 HOH HOH . D 4 HOH A 124 624 216 HOH HOH . D 4 HOH A 125 625 220 HOH HOH . D 4 HOH A 126 626 33 HOH HOH . D 4 HOH A 127 627 65 HOH HOH . D 4 HOH A 128 628 38 HOH HOH . D 4 HOH A 129 629 83 HOH HOH . D 4 HOH A 130 630 296 HOH HOH . D 4 HOH A 131 631 60 HOH HOH . D 4 HOH A 132 632 162 HOH HOH . D 4 HOH A 133 633 176 HOH HOH . D 4 HOH A 134 634 58 HOH HOH . D 4 HOH A 135 635 32 HOH HOH . D 4 HOH A 136 636 191 HOH HOH . D 4 HOH A 137 637 265 HOH HOH . D 4 HOH A 138 638 199 HOH HOH . D 4 HOH A 139 639 229 HOH HOH . D 4 HOH A 140 640 4 HOH HOH . D 4 HOH A 141 641 62 HOH HOH . D 4 HOH A 142 642 53 HOH HOH . D 4 HOH A 143 643 36 HOH HOH . D 4 HOH A 144 644 16 HOH HOH . D 4 HOH A 145 645 61 HOH HOH . D 4 HOH A 146 646 82 HOH HOH . D 4 HOH A 147 647 281 HOH HOH . D 4 HOH A 148 648 10 HOH HOH . D 4 HOH A 149 649 155 HOH HOH . D 4 HOH A 150 650 318 HOH HOH . D 4 HOH A 151 651 31 HOH HOH . D 4 HOH A 152 652 88 HOH HOH . D 4 HOH A 153 653 57 HOH HOH . D 4 HOH A 154 654 163 HOH HOH . D 4 HOH A 155 655 207 HOH HOH . D 4 HOH A 156 656 12 HOH HOH . D 4 HOH A 157 657 18 HOH HOH . D 4 HOH A 158 658 21 HOH HOH . D 4 HOH A 159 659 270 HOH HOH . D 4 HOH A 160 660 46 HOH HOH . D 4 HOH A 161 661 77 HOH HOH . D 4 HOH A 162 662 9 HOH HOH . D 4 HOH A 163 663 315 HOH HOH . D 4 HOH A 164 664 291 HOH HOH . D 4 HOH A 165 665 198 HOH HOH . D 4 HOH A 166 666 273 HOH HOH . D 4 HOH A 167 667 279 HOH HOH . D 4 HOH A 168 668 8 HOH HOH . D 4 HOH A 169 669 204 HOH HOH . D 4 HOH A 170 670 41 HOH HOH . D 4 HOH A 171 671 158 HOH HOH . D 4 HOH A 172 672 166 HOH HOH . D 4 HOH A 173 673 76 HOH HOH . D 4 HOH A 174 674 68 HOH HOH . D 4 HOH A 175 675 330 HOH HOH . D 4 HOH A 176 676 234 HOH HOH . D 4 HOH A 177 677 59 HOH HOH . D 4 HOH A 178 678 210 HOH HOH . D 4 HOH A 179 679 286 HOH HOH . D 4 HOH A 180 680 86 HOH HOH . D 4 HOH A 181 681 11 HOH HOH . D 4 HOH A 182 682 159 HOH HOH . D 4 HOH A 183 683 40 HOH HOH . D 4 HOH A 184 684 34 HOH HOH . D 4 HOH A 185 685 130 HOH HOH . D 4 HOH A 186 686 125 HOH HOH . D 4 HOH A 187 687 71 HOH HOH . D 4 HOH A 188 688 264 HOH HOH . D 4 HOH A 189 689 226 HOH HOH . D 4 HOH A 190 690 274 HOH HOH . D 4 HOH A 191 691 90 HOH HOH . D 4 HOH A 192 692 132 HOH HOH . D 4 HOH A 193 693 115 HOH HOH . D 4 HOH A 194 694 213 HOH HOH . D 4 HOH A 195 695 28 HOH HOH . D 4 HOH A 196 696 325 HOH HOH . D 4 HOH A 197 697 136 HOH HOH . D 4 HOH A 198 698 181 HOH HOH . D 4 HOH A 199 699 87 HOH HOH . D 4 HOH A 200 700 194 HOH HOH . D 4 HOH A 201 701 203 HOH HOH . D 4 HOH A 202 702 184 HOH HOH . D 4 HOH A 203 703 268 HOH HOH . D 4 HOH A 204 704 183 HOH HOH . D 4 HOH A 205 705 157 HOH HOH . D 4 HOH A 206 706 42 HOH HOH . D 4 HOH A 207 707 235 HOH HOH . D 4 HOH A 208 708 202 HOH HOH . D 4 HOH A 209 709 294 HOH HOH . D 4 HOH A 210 710 49 HOH HOH . D 4 HOH A 211 711 222 HOH HOH . D 4 HOH A 212 712 112 HOH HOH . D 4 HOH A 213 713 131 HOH HOH . D 4 HOH A 214 714 195 HOH HOH . D 4 HOH A 215 715 27 HOH HOH . D 4 HOH A 216 716 146 HOH HOH . D 4 HOH A 217 717 97 HOH HOH . D 4 HOH A 218 718 217 HOH HOH . D 4 HOH A 219 719 84 HOH HOH . D 4 HOH A 220 720 278 HOH HOH . D 4 HOH A 221 721 290 HOH HOH . D 4 HOH A 222 722 317 HOH HOH . D 4 HOH A 223 723 227 HOH HOH . D 4 HOH A 224 724 251 HOH HOH . D 4 HOH A 225 725 201 HOH HOH . D 4 HOH A 226 726 244 HOH HOH . D 4 HOH A 227 727 187 HOH HOH . D 4 HOH A 228 728 152 HOH HOH . D 4 HOH A 229 729 225 HOH HOH . D 4 HOH A 230 730 173 HOH HOH . D 4 HOH A 231 731 140 HOH HOH . D 4 HOH A 232 732 64 HOH HOH . D 4 HOH A 233 733 120 HOH HOH . D 4 HOH A 234 734 253 HOH HOH . D 4 HOH A 235 735 215 HOH HOH . D 4 HOH A 236 736 258 HOH HOH . D 4 HOH A 237 737 133 HOH HOH . D 4 HOH A 238 738 153 HOH HOH . D 4 HOH A 239 739 269 HOH HOH . D 4 HOH A 240 740 197 HOH HOH . D 4 HOH A 241 741 303 HOH HOH . D 4 HOH A 242 742 78 HOH HOH . D 4 HOH A 243 743 267 HOH HOH . D 4 HOH A 244 744 283 HOH HOH . D 4 HOH A 245 745 276 HOH HOH . D 4 HOH A 246 746 214 HOH HOH . D 4 HOH A 247 747 288 HOH HOH . D 4 HOH A 248 748 300 HOH HOH . D 4 HOH A 249 749 29 HOH HOH . D 4 HOH A 250 750 287 HOH HOH . D 4 HOH A 251 751 111 HOH HOH . D 4 HOH A 252 752 323 HOH HOH . D 4 HOH A 253 753 89 HOH HOH . D 4 HOH A 254 754 275 HOH HOH . D 4 HOH A 255 755 311 HOH HOH . D 4 HOH A 256 756 322 HOH HOH . D 4 HOH A 257 757 156 HOH HOH . D 4 HOH A 258 758 298 HOH HOH . D 4 HOH A 259 759 123 HOH HOH . D 4 HOH A 260 760 272 HOH HOH . D 4 HOH A 261 761 25 HOH HOH . D 4 HOH A 262 762 328 HOH HOH . D 4 HOH A 263 763 106 HOH HOH . D 4 HOH A 264 764 239 HOH HOH . D 4 HOH A 265 765 108 HOH HOH . D 4 HOH A 266 766 92 HOH HOH . D 4 HOH A 267 767 308 HOH HOH . D 4 HOH A 268 768 262 HOH HOH . D 4 HOH A 269 769 149 HOH HOH . D 4 HOH A 270 770 232 HOH HOH . D 4 HOH A 271 771 145 HOH HOH . D 4 HOH A 272 772 297 HOH HOH . D 4 HOH A 273 773 151 HOH HOH . D 4 HOH A 274 774 189 HOH HOH . D 4 HOH A 275 775 205 HOH HOH . D 4 HOH A 276 776 180 HOH HOH . D 4 HOH A 277 777 313 HOH HOH . D 4 HOH A 278 778 175 HOH HOH . D 4 HOH A 279 779 141 HOH HOH . D 4 HOH A 280 780 223 HOH HOH . D 4 HOH A 281 781 284 HOH HOH . D 4 HOH A 282 782 209 HOH HOH . D 4 HOH A 283 783 240 HOH HOH . D 4 HOH A 284 784 241 HOH HOH . D 4 HOH A 285 785 314 HOH HOH . D 4 HOH A 286 786 169 HOH HOH . D 4 HOH A 287 787 186 HOH HOH . D 4 HOH A 288 788 179 HOH HOH . D 4 HOH A 289 789 309 HOH HOH . D 4 HOH A 290 790 285 HOH HOH . D 4 HOH A 291 791 165 HOH HOH . D 4 HOH A 292 792 255 HOH HOH . D 4 HOH A 293 793 277 HOH HOH . D 4 HOH A 294 794 326 HOH HOH . D 4 HOH A 295 795 263 HOH HOH . D 4 HOH A 296 796 101 HOH HOH . D 4 HOH A 297 797 312 HOH HOH . D 4 HOH A 298 798 299 HOH HOH . D 4 HOH A 299 799 208 HOH HOH . D 4 HOH A 300 800 200 HOH HOH . D 4 HOH A 301 801 321 HOH HOH . D 4 HOH A 302 802 247 HOH HOH . D 4 HOH A 303 803 224 HOH HOH . D 4 HOH A 304 804 211 HOH HOH . D 4 HOH A 305 805 305 HOH HOH . D 4 HOH A 306 806 282 HOH HOH . D 4 HOH A 307 807 236 HOH HOH . D 4 HOH A 308 808 280 HOH HOH . D 4 HOH A 309 809 289 HOH HOH . D 4 HOH A 310 810 295 HOH HOH . D 4 HOH A 311 811 193 HOH HOH . D 4 HOH A 312 812 310 HOH HOH . D 4 HOH A 313 813 43 HOH HOH . D 4 HOH A 314 814 238 HOH HOH . D 4 HOH A 315 815 319 HOH HOH . D 4 HOH A 316 816 174 HOH HOH . D 4 HOH A 317 817 170 HOH HOH . D 4 HOH A 318 818 107 HOH HOH . D 4 HOH A 319 819 127 HOH HOH . D 4 HOH A 320 820 320 HOH HOH . D 4 HOH A 321 821 324 HOH HOH . D 4 HOH A 322 822 329 HOH HOH . D 4 HOH A 323 823 178 HOH HOH . D 4 HOH A 324 824 143 HOH HOH . D 4 HOH A 325 825 137 HOH HOH . D 4 HOH A 326 826 63 HOH HOH . D 4 HOH A 327 827 306 HOH HOH . D 4 HOH A 328 828 93 HOH HOH . D 4 HOH A 329 829 259 HOH HOH . D 4 HOH A 330 830 266 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -0.298 35.713 -19.862 1 63.71 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 3 -0.845 35.639 -21.253 1 71.57 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 3 -0.664 34.158 -19.004 1 41.97 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 3 1.513 35.62 -19.925 1 65.53 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #