data_6DAL
#
_model_server_result.job_id            b_Z9Nj_oXY63E9RGzFgM6A 
_model_server_result.datetime_utc      '2024-11-05 08:01:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dal 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    6DAL 
#
_exptl.entry_id    6DAL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DAL 
_cell.length_a            76.558 
_cell.length_b            101.62 
_cell.length_c            127.13 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DAL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A N CYS 38 A CYS 58 1_555 C O3 GOL . A GOL 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? 
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 D N29 G1D . A G1D 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 219 n n 
CHA C4D HEM doub 220 n n 
CHA HHA HEM sing 221 n n 
CHB C4A HEM sing 222 n n 
CHB C1B HEM doub 223 n n 
CHB HHB HEM sing 224 n n 
CHC C4B HEM sing 225 n n 
CHC C1C HEM doub 226 n n 
CHC HHC HEM sing 227 n n 
CHD C4C HEM doub 228 n n 
CHD C1D HEM sing 229 n n 
CHD HHD HEM sing 230 n n 
C1A C2A HEM doub 231 n y 
C1A NA HEM sing 232 n y 
C2A C3A HEM sing 233 n y 
C2A CAA HEM sing 234 n n 
C3A C4A HEM doub 235 n y 
C3A CMA HEM sing 236 n n 
C4A NA HEM sing 237 n y 
CMA HMA HEM sing 238 n n 
CMA HMAA HEM sing 239 n n 
CMA HMAB HEM sing 240 n n 
CAA CBA HEM sing 241 n n 
CAA HAA HEM sing 242 n n 
CAA HAAA HEM sing 243 n n 
CBA CGA HEM sing 244 n n 
CBA HBA HEM sing 245 n n 
CBA HBAA HEM sing 246 n n 
CGA O1A HEM doub 247 n n 
CGA O2A HEM sing 248 n n 
C1B C2B HEM sing 249 n n 
C1B NB HEM sing 250 n n 
C2B C3B HEM doub 251 n n 
C2B CMB HEM sing 252 n n 
C3B C4B HEM sing 253 n n 
C3B CAB HEM sing 254 n n 
C4B NB HEM doub 255 n n 
CMB HMB HEM sing 256 n n 
CMB HMBA HEM sing 257 n n 
CMB HMBB HEM sing 258 n n 
CAB CBB HEM doub 259 n n 
CAB HAB HEM sing 260 n n 
CBB HBB HEM sing 261 n n 
CBB HBBA HEM sing 262 n n 
C1C C2C HEM sing 263 n y 
C1C NC HEM sing 264 n y 
C2C C3C HEM doub 265 n y 
C2C CMC HEM sing 266 n n 
C3C C4C HEM sing 267 n y 
C3C CAC HEM sing 268 n n 
C4C NC HEM sing 269 n y 
CMC HMC HEM sing 270 n n 
CMC HMCA HEM sing 271 n n 
CMC HMCB HEM sing 272 n n 
CAC CBC HEM doub 273 n n 
CAC HAC HEM sing 274 n n 
CBC HBC HEM sing 275 n n 
CBC HBCA HEM sing 276 n n 
C1D C2D HEM sing 277 n n 
C1D ND HEM doub 278 n n 
C2D C3D HEM doub 279 n n 
C2D CMD HEM sing 280 n n 
C3D C4D HEM sing 281 n n 
C3D CAD HEM sing 282 n n 
C4D ND HEM sing 283 n n 
CMD HMD HEM sing 284 n n 
CMD HMDA HEM sing 285 n n 
CMD HMDB HEM sing 286 n n 
CAD CBD HEM sing 287 n n 
CAD HAD HEM sing 288 n n 
CAD HADA HEM sing 289 n n 
CBD CGD HEM sing 290 n n 
CBD HBD HEM sing 291 n n 
CBD HBDA HEM sing 292 n n 
CGD O1D HEM doub 293 n n 
CGD O2D HEM sing 294 n n 
O2A H2A HEM sing 295 n n 
O2D H2D HEM sing 296 n n 
FE NA HEM sing 297 n n 
FE NB HEM sing 298 n n 
FE NC HEM sing 299 n n 
FE ND HEM sing 300 n n 
#
_atom_sites.entry_id                     6DAL 
_atom_sites.fract_transf_matrix[1][1]    0.013062 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009841 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007866 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 GOL A 1 602 605 GOL GOL . 
D 4 G1D A 1 603 700 G1D 189 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.201 -19.856 -9.352 1 51.98 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -15.83 -22.473 -13.37 1 68.37 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -16.499 -26.243 -10.48 1 56.79 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -15.411 -23.77 -6.498 1 48.07 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -15.342 -20.254 -10.662 1 64.05 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -15.236 -19.386 -11.807 1 69.57 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -15.396 -20.125 -12.897 1 70.78 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -15.629 -21.467 -12.492 1 59.69 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -15.389 -19.711 -14.374 1 39.29 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -14.957 -17.893 -11.771 1 59.51 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -13.487 -17.773 -12.157 1 60.07 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -13.146 -16.292 -12.212 1 73.7 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -12.073 -15.973 -12.792 1 54.56 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -13.941 -15.419 -11.717 1 55.59 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -16.059 -23.738 -12.95 1 66.67 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -16.335 -24.882 -13.795 1 70.38 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -16.546 -25.934 -12.979 1 64.39 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -16.376 -25.454 -11.61 1 73.84 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -16.399 -24.793 -15.343 1 63.77 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -16.866 -27.412 -13.302 1 54.51 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -16.527 -27.975 -14.459 1 69.68 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.191 -25.916 -9.177 1 60.48 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -16.086 -26.872 -8.101 1 74.81 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -15.785 -26.229 -6.974 1 70.75 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -15.702 -24.819 -7.301 1 55.64 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.268 -28.389 -8.231 1 50.89 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -15.596 -26.966 -5.632 1 60.14 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -15.116 -26.371 -4.549 1 67.36 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -15.3 -22.468 -6.94 1 66.03 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -15.088 -21.321 -6.092 1 63.94 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -15.016 -20.231 -6.867 1 73.27 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -15.195 -20.665 -8.25 1 49.54 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -14.971 -21.377 -4.564 1 60.56 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -14.802 -18.774 -6.377 1 58.37 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -13.317 -18.418 -6.316 1 63.57 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -12.996 -17.121 -5.571 1 83.74 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -11.993 -17.084 -4.788 1 74.81 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -13.722 -16.103 -5.725 1 77.26 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -15.597 -21.528 -11.141 1 56.86 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -16.076 -24.106 -11.644 1 65.94 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -15.971 -24.661 -8.632 1 63.18 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -15.361 -22.029 -8.255 1 71.27 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -15.556 -23.174 -9.911 1 62.13 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#