data_6DAL
#
_model_server_result.job_id            1GQJc25rg3JvKbxmyu_L4g 
_model_server_result.datetime_utc      '2024-11-28 10:14:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dal 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    6DAL 
#
_exptl.entry_id    6DAL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              502.648 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Nalpha-{(2S)-2-[(tert-butoxycarbonyl)amino]-3-phenylpropyl}-N-[2-(pyridin-3-yl)ethyl]-D-phenylalaninamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DAL 
_cell.length_a            76.558 
_cell.length_b            101.62 
_cell.length_c            127.13 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DAL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A N CYS 38 A CYS 58 1_555 C O3 GOL . A GOL 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? 
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 D N29 G1D . A G1D 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
#
_chem_comp.formula           'C30 H38 N4 O3' 
_chem_comp.formula_weight    502.648 
_chem_comp.id                G1D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Nalpha-{(2S)-2-[(tert-butoxycarbonyl)amino]-3-phenylpropyl}-N-[2-(pyridin-3-yl)ethyl]-D-phenylalaninamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C35 C34 G1D doub 83 n y 
C35 C36 G1D sing 84 n y 
C34 C33 G1D sing 85 n y 
C28 C27 G1D doub 86 n y 
C28 N29 G1D sing 87 n y 
C27 C26 G1D sing 88 n y 
C36 C37 G1D doub 89 n y 
C04 C02 G1D sing 90 n n 
C03 C02 G1D sing 91 n n 
C33 C32 G1D doub 92 n y 
N29 C30 G1D doub 93 n y 
C01 C02 G1D sing 94 n n 
C02 O05 G1D sing 95 n n 
C26 C25 G1D doub 96 n y 
C37 C32 G1D sing 97 n y 
C32 C31 G1D sing 98 n n 
C30 C25 G1D sing 99 n y 
C25 C24 G1D sing 100 n n 
O05 C06 G1D sing 101 n n 
C31 C09 G1D sing 102 n n 
C09 N08 G1D sing 103 n n 
C09 C10 G1D sing 104 n n 
N08 C06 G1D sing 105 n n 
C06 O07 G1D doub 106 n n 
N22 C23 G1D sing 107 n n 
N22 C20 G1D sing 108 n n 
C13 C12 G1D sing 109 n n 
C13 C14 G1D sing 110 n n 
C12 N11 G1D sing 111 n n 
C12 C20 G1D sing 112 n n 
C24 C23 G1D sing 113 n n 
N11 C10 G1D sing 114 n n 
C20 O21 G1D doub 115 n n 
C15 C14 G1D doub 116 n y 
C15 C16 G1D sing 117 n y 
C14 C19 G1D sing 118 n y 
C16 C17 G1D doub 119 n y 
C19 C18 G1D doub 120 n y 
C17 C18 G1D sing 121 n y 
C26 H1 G1D sing 122 n n 
C35 H2 G1D sing 123 n n 
C36 H3 G1D sing 124 n n 
C24 H4 G1D sing 125 n n 
C24 H5 G1D sing 126 n n 
C16 H6 G1D sing 127 n n 
C17 H7 G1D sing 128 n n 
C19 H8 G1D sing 129 n n 
C18 H9 G1D sing 130 n n 
C28 H10 G1D sing 131 n n 
C34 H11 G1D sing 132 n n 
C33 H12 G1D sing 133 n n 
C31 H13 G1D sing 134 n n 
C31 H14 G1D sing 135 n n 
C30 H15 G1D sing 136 n n 
C01 H16 G1D sing 137 n n 
C01 H17 G1D sing 138 n n 
C01 H18 G1D sing 139 n n 
C03 H19 G1D sing 140 n n 
C03 H20 G1D sing 141 n n 
C03 H21 G1D sing 142 n n 
C04 H22 G1D sing 143 n n 
C04 H23 G1D sing 144 n n 
C04 H24 G1D sing 145 n n 
C09 H25 G1D sing 146 n n 
C10 H26 G1D sing 147 n n 
C10 H27 G1D sing 148 n n 
C12 H28 G1D sing 149 n n 
C13 H29 G1D sing 150 n n 
C13 H30 G1D sing 151 n n 
C15 H31 G1D sing 152 n n 
C23 H32 G1D sing 153 n n 
C23 H33 G1D sing 154 n n 
C27 H34 G1D sing 155 n n 
C37 H35 G1D sing 156 n n 
N08 H36 G1D sing 157 n n 
N11 H37 G1D sing 158 n n 
N22 H39 G1D sing 159 n n 
#
_atom_sites.entry_id                     6DAL 
_atom_sites.fract_transf_matrix[1][1]    0.013062 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009841 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007866 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 GOL A 1 602 605 GOL GOL . 
D 4 G1D A 1 603 700 G1D 189 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C20 G1D . . . D 4 -21.435 -18.928 -6.466 1 128.67 ? C20 G1D 603 A 1 
HETATM 2 C C25 G1D . . . D 4 -19.56 -22.187 -8.323 1 58.63 ? C25 G1D 603 A 1 
HETATM 3 C C26 G1D . . . D 4 -20.413 -22.274 -9.381 1 59.76 ? C26 G1D 603 A 1 
HETATM 4 C C35 G1D . . . D 4 -19.506 -18.683 -11.63 1 101.49 ? C35 G1D 603 A 1 
HETATM 5 C C36 G1D . . . D 4 -18.592 -19.126 -10.647 1 92.29 ? C36 G1D 603 A 1 
HETATM 6 C C24 G1D . . . D 4 -19.939 -21.915 -6.995 1 85.56 ? C24 G1D 603 A 1 
HETATM 7 C C16 G1D . . . D 4 -26.56 -20.328 -4.892 1 147.85 ? C16 G1D 603 A 1 
HETATM 8 C C17 G1D . . . D 4 -26.072 -19.903 -3.65 1 141.19 ? C17 G1D 603 A 1 
HETATM 9 C C19 G1D . . . D 4 -24.186 -18.896 -4.771 1 117.85 ? C19 G1D 603 A 1 
HETATM 10 C C18 G1D . . . D 4 -24.87 -19.189 -3.608 1 128.29 ? C18 G1D 603 A 1 
HETATM 11 C C28 G1D . . . D 4 -18.581 -22.629 -10.836 1 74.09 ? C28 G1D 603 A 1 
HETATM 12 C C34 G1D . . . D 4 -20.368 -17.625 -11.311 1 109.33 ? C34 G1D 603 A 1 
HETATM 13 C C33 G1D . . . D 4 -20.307 -17.029 -10.027 1 97.47 ? C33 G1D 603 A 1 
HETATM 14 C C32 G1D . . . D 4 -19.393 -17.455 -9.055 1 75.07 ? C32 G1D 603 A 1 
HETATM 15 C C31 G1D . . . D 4 -19.387 -16.817 -7.73 1 103.9 ? C31 G1D 603 A 1 
HETATM 16 C C30 G1D . . . D 4 -18.182 -22.292 -8.591 1 65 ? C30 G1D 603 A 1 
HETATM 17 C C01 G1D . . . D 4 -23.233 -11.665 -9.488 1 114.63 ? C01 G1D 603 A 1 
HETATM 18 C C02 G1D . . . D 4 -22.242 -12.863 -9.467 1 141.65 ? C02 G1D 603 A 1 
HETATM 19 C C03 G1D . . . D 4 -20.921 -12.357 -10.088 1 141.9 ? C03 G1D 603 A 1 
HETATM 20 C C04 G1D . . . D 4 -22.876 -13.992 -10.337 1 135.8 ? C04 G1D 603 A 1 
HETATM 21 C C06 G1D . . . D 4 -20.857 -13.319 -7.342 1 151.41 ? C06 G1D 603 A 1 
HETATM 22 C C09 G1D . . . D 4 -20.541 -15.753 -7.518 1 128.55 ? C09 G1D 603 A 1 
HETATM 23 C C10 G1D . . . D 4 -21.442 -16.02 -6.229 1 134.38 ? C10 G1D 603 A 1 
HETATM 24 C C12 G1D . . . D 4 -22.532 -18.131 -7.148 1 138.36 ? C12 G1D 603 A 1 
HETATM 25 C C13 G1D . . . D 4 -23.897 -18.991 -7.307 1 136.38 ? C13 G1D 603 A 1 
HETATM 26 C C14 G1D . . . D 4 -24.649 -19.32 -6.023 1 126.7 ? C14 G1D 603 A 1 
HETATM 27 C C15 G1D . . . D 4 -25.855 -20.038 -6.065 1 136.03 ? C15 G1D 603 A 1 
HETATM 28 C C23 G1D . . . D 4 -19.574 -20.48 -6.809 1 94.55 ? C23 G1D 603 A 1 
HETATM 29 C C27 G1D . . . D 4 -19.964 -22.503 -10.666 1 64.6 ? C27 G1D 603 A 1 
HETATM 30 C C37 G1D . . . D 4 -18.542 -18.511 -9.378 1 74.92 ? C37 G1D 603 A 1 
HETATM 31 N N08 G1D . . . D 4 -19.954 -14.422 -7.458 1 136.29 ? N08 G1D 603 A 1 
HETATM 32 N N11 G1D . . . D 4 -22.744 -16.806 -6.485 1 137.48 ? N11 G1D 603 A 1 
HETATM 33 N N22 G1D . . . D 4 -20.566 -19.691 -7.315 1 100.27 ? N22 G1D 603 A 1 
HETATM 34 N N29 G1D . . . D 4 -17.7 -22.518 -9.797 1 67.87 ? N29 G1D 603 A 1 
HETATM 35 O O05 G1D . . . D 4 -22.076 -13.413 -8.039 1 153.41 ? O05 G1D 603 A 1 
HETATM 36 O O07 G1D . . . D 4 -20.605 -12.364 -6.608 1 161.68 ? O07 G1D 603 A 1 
HETATM 37 O O21 G1D . . . D 4 -21.361 -18.868 -5.214 1 138.54 ? O21 G1D 603 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           37 
#