data_6DAX
#
_model_server_result.job_id            6s_KGiYs7IQSGnaJA4-_Xg 
_model_server_result.datetime_utc      '2024-10-22 11:42:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dax 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6DAX 
#
_exptl.entry_id    6DAX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.72 
_cell.angle_gamma         90 
_cell.entry_id            6DAX 
_cell.length_a            80.376 
_cell.length_b            67.076 
_cell.length_c            62.646 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DAX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 148 A HIS 168 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc2 A OE1 GLU 150 A GLU 170 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc3 A NE2 HIS 296 A HIS 316 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc4 B O1 AKG . A AKG 401 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc5 B O5 AKG . A AKG 401 1_555 D FE FE2 . A FE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     6DAX 
_atom_sites.fract_transf_matrix[1][1]    0.012442 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004216 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014908 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016854 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AKG A 1 401 1 AKG AKG . 
C 3 HRG A 1 402 1 HRG DRG . 
D 4 FE2 A 1 403 1 FE2 FE2 . 
E 5 HOH A 1 501 83 HOH HOH . 
E 5 HOH A 2 502 60 HOH HOH . 
E 5 HOH A 3 503 84 HOH HOH . 
E 5 HOH A 4 504 54 HOH HOH . 
E 5 HOH A 5 505 30 HOH HOH . 
E 5 HOH A 6 506 14 HOH HOH . 
E 5 HOH A 7 507 43 HOH HOH . 
E 5 HOH A 8 508 40 HOH HOH . 
E 5 HOH A 9 509 2 HOH HOH . 
E 5 HOH A 10 510 10 HOH HOH . 
E 5 HOH A 11 511 31 HOH HOH . 
E 5 HOH A 12 512 59 HOH HOH . 
E 5 HOH A 13 513 26 HOH HOH . 
E 5 HOH A 14 514 18 HOH HOH . 
E 5 HOH A 15 515 62 HOH HOH . 
E 5 HOH A 16 516 44 HOH HOH . 
E 5 HOH A 17 517 37 HOH HOH . 
E 5 HOH A 18 518 48 HOH HOH . 
E 5 HOH A 19 519 34 HOH HOH . 
E 5 HOH A 20 520 41 HOH HOH . 
E 5 HOH A 21 521 27 HOH HOH . 
E 5 HOH A 22 522 16 HOH HOH . 
E 5 HOH A 23 523 46 HOH HOH . 
E 5 HOH A 24 524 53 HOH HOH . 
E 5 HOH A 25 525 12 HOH HOH . 
E 5 HOH A 26 526 28 HOH HOH . 
E 5 HOH A 27 527 5 HOH HOH . 
E 5 HOH A 28 528 13 HOH HOH . 
E 5 HOH A 29 529 57 HOH HOH . 
E 5 HOH A 30 530 11 HOH HOH . 
E 5 HOH A 31 531 17 HOH HOH . 
E 5 HOH A 32 532 45 HOH HOH . 
E 5 HOH A 33 533 7 HOH HOH . 
E 5 HOH A 34 534 9 HOH HOH . 
E 5 HOH A 35 535 24 HOH HOH . 
E 5 HOH A 36 536 36 HOH HOH . 
E 5 HOH A 37 537 39 HOH HOH . 
E 5 HOH A 38 538 77 HOH HOH . 
E 5 HOH A 39 539 69 HOH HOH . 
E 5 HOH A 40 540 58 HOH HOH . 
E 5 HOH A 41 541 25 HOH HOH . 
E 5 HOH A 42 542 68 HOH HOH . 
E 5 HOH A 43 543 52 HOH HOH . 
E 5 HOH A 44 544 42 HOH HOH . 
E 5 HOH A 45 545 15 HOH HOH . 
E 5 HOH A 46 546 71 HOH HOH . 
E 5 HOH A 47 547 32 HOH HOH . 
E 5 HOH A 48 548 87 HOH HOH . 
E 5 HOH A 49 549 35 HOH HOH . 
E 5 HOH A 50 550 38 HOH HOH . 
E 5 HOH A 51 551 1 HOH HOH . 
E 5 HOH A 52 552 61 HOH HOH . 
E 5 HOH A 53 553 64 HOH HOH . 
E 5 HOH A 54 554 55 HOH HOH . 
E 5 HOH A 55 555 4 HOH HOH . 
E 5 HOH A 56 556 20 HOH HOH . 
E 5 HOH A 57 557 73 HOH HOH . 
E 5 HOH A 58 558 8 HOH HOH . 
E 5 HOH A 59 559 6 HOH HOH . 
E 5 HOH A 60 560 86 HOH HOH . 
E 5 HOH A 61 561 51 HOH HOH . 
E 5 HOH A 62 562 65 HOH HOH . 
E 5 HOH A 63 563 76 HOH HOH . 
E 5 HOH A 64 564 63 HOH HOH . 
E 5 HOH A 65 565 33 HOH HOH . 
E 5 HOH A 66 566 74 HOH HOH . 
E 5 HOH A 67 567 29 HOH HOH . 
E 5 HOH A 68 568 21 HOH HOH . 
E 5 HOH A 69 569 78 HOH HOH . 
E 5 HOH A 70 570 47 HOH HOH . 
E 5 HOH A 71 571 72 HOH HOH . 
E 5 HOH A 72 572 67 HOH HOH . 
E 5 HOH A 73 573 66 HOH HOH . 
E 5 HOH A 74 574 22 HOH HOH . 
E 5 HOH A 75 575 23 HOH HOH . 
E 5 HOH A 76 576 75 HOH HOH . 
E 5 HOH A 77 577 79 HOH HOH . 
E 5 HOH A 78 578 3 HOH HOH . 
E 5 HOH A 79 579 50 HOH HOH . 
E 5 HOH A 80 580 80 HOH HOH . 
E 5 HOH A 81 581 19 HOH HOH . 
E 5 HOH A 82 582 56 HOH HOH . 
E 5 HOH A 83 583 85 HOH HOH . 
E 5 HOH A 84 584 49 HOH HOH . 
E 5 HOH A 85 585 82 HOH HOH . 
E 5 HOH A 86 586 81 HOH HOH . 
E 5 HOH A 87 587 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . B 2 8.964 2.815 19.98 1 23.7 ? C1 AKG 401 A 1 
HETATM 2 O O1 AKG . . . B 2 8.767 3.555 18.995 1 23.9 ? O1 AKG 401 A 1 
HETATM 3 O O2 AKG . . . B 2 9.935 2.031 20.01 1 25.19 ? O2 AKG 401 A 1 
HETATM 4 C C2 AKG . . . B 2 8.039 2.895 21.111 1 23.34 ? C2 AKG 401 A 1 
HETATM 5 O O5 AKG . . . B 2 7.171 3.76 21.12 1 22.52 ? O5 AKG 401 A 1 
HETATM 6 C C3 AKG . . . B 2 8.16 1.935 22.271 1 22.73 ? C3 AKG 401 A 1 
HETATM 7 C C4 AKG . . . B 2 6.846 1.201 22.52 1 22.46 ? C4 AKG 401 A 1 
HETATM 8 C C5 AKG . . . B 2 6.941 0.31 23.74 1 22 ? C5 AKG 401 A 1 
HETATM 9 O O3 AKG . . . B 2 5.947 -0.386 24.054 1 21.67 ? O3 AKG 401 A 1 
HETATM 10 O O4 AKG . . . B 2 8.003 0.278 24.395 1 21.7 ? O4 AKG 401 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#