data_6DAZ
#
_model_server_result.job_id            K3w4-s2jtaITvyp-5eXRKA 
_model_server_result.datetime_utc      '2024-11-13 16:50:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6daz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    6DAZ 
#
_exptl.entry_id    6DAZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.088 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SUCCINIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.6 
_cell.angle_gamma         90 
_cell.entry_id            6DAZ 
_cell.length_a            81.788 
_cell.length_b            66.388 
_cell.length_c            63.042 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DAZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 146 A HIS 168 1_555 B FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc2 A OE1 GLU 148 A GLU 170 1_555 B FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc3 A NE2 HIS 294 A HIS 316 1_555 B FE FE2 . A FE2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc4 B FE FE2 . A FE2 401 1_555 C O3 SIN . A SIN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc5 B FE FE2 . A FE2 401 1_555 C O4 SIN . A SIN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc6 B FE FE2 . A FE2 401 1_555 D O12 G3M . A G3M 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
#
_chem_comp.formula           'C4 H6 O4' 
_chem_comp.formula_weight    118.088 
_chem_comp.id                SIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SUCCINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 SIN doub 319 n n 
C1 O2 SIN sing 320 n n 
C1 C2 SIN sing 321 n n 
O2 HO2 SIN sing 322 n n 
C2 C3 SIN sing 323 n n 
C2 H21 SIN sing 324 n n 
C2 H22 SIN sing 325 n n 
C3 C4 SIN sing 326 n n 
C3 H31 SIN sing 327 n n 
C3 H32 SIN sing 328 n n 
C4 O3 SIN doub 329 n n 
C4 O4 SIN sing 330 n n 
O4 HO4 SIN sing 331 n n 
#
_atom_sites.entry_id                     6DAZ 
_atom_sites.fract_transf_matrix[1][1]    0.012227 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004353 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016838 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE2 A 1 401 1 FE2 FE2 . 
C 3 SIN A 1 402 1 SIN SIN . 
D 4 G3M A 1 403 1 G3M OHH . 
E 5 HOH A 1 501 142 HOH HOH . 
E 5 HOH A 2 502 141 HOH HOH . 
E 5 HOH A 3 503 144 HOH HOH . 
E 5 HOH A 4 504 130 HOH HOH . 
E 5 HOH A 5 505 103 HOH HOH . 
E 5 HOH A 6 506 134 HOH HOH . 
E 5 HOH A 7 507 71 HOH HOH . 
E 5 HOH A 8 508 146 HOH HOH . 
E 5 HOH A 9 509 48 HOH HOH . 
E 5 HOH A 10 510 112 HOH HOH . 
E 5 HOH A 11 511 59 HOH HOH . 
E 5 HOH A 12 512 111 HOH HOH . 
E 5 HOH A 13 513 57 HOH HOH . 
E 5 HOH A 14 514 145 HOH HOH . 
E 5 HOH A 15 515 46 HOH HOH . 
E 5 HOH A 16 516 27 HOH HOH . 
E 5 HOH A 17 517 16 HOH HOH . 
E 5 HOH A 18 518 44 HOH HOH . 
E 5 HOH A 19 519 10 HOH HOH . 
E 5 HOH A 20 520 21 HOH HOH . 
E 5 HOH A 21 521 127 HOH HOH . 
E 5 HOH A 22 522 118 HOH HOH . 
E 5 HOH A 23 523 79 HOH HOH . 
E 5 HOH A 24 524 99 HOH HOH . 
E 5 HOH A 25 525 125 HOH HOH . 
E 5 HOH A 26 526 24 HOH HOH . 
E 5 HOH A 27 527 50 HOH HOH . 
E 5 HOH A 28 528 4 HOH HOH . 
E 5 HOH A 29 529 100 HOH HOH . 
E 5 HOH A 30 530 94 HOH HOH . 
E 5 HOH A 31 531 18 HOH HOH . 
E 5 HOH A 32 532 14 HOH HOH . 
E 5 HOH A 33 533 140 HOH HOH . 
E 5 HOH A 34 534 7 HOH HOH . 
E 5 HOH A 35 535 23 HOH HOH . 
E 5 HOH A 36 536 63 HOH HOH . 
E 5 HOH A 37 537 90 HOH HOH . 
E 5 HOH A 38 538 38 HOH HOH . 
E 5 HOH A 39 539 95 HOH HOH . 
E 5 HOH A 40 540 2 HOH HOH . 
E 5 HOH A 41 541 6 HOH HOH . 
E 5 HOH A 42 542 19 HOH HOH . 
E 5 HOH A 43 543 76 HOH HOH . 
E 5 HOH A 44 544 56 HOH HOH . 
E 5 HOH A 45 545 52 HOH HOH . 
E 5 HOH A 46 546 29 HOH HOH . 
E 5 HOH A 47 547 1 HOH HOH . 
E 5 HOH A 48 548 36 HOH HOH . 
E 5 HOH A 49 549 83 HOH HOH . 
E 5 HOH A 50 550 80 HOH HOH . 
E 5 HOH A 51 551 47 HOH HOH . 
E 5 HOH A 52 552 3 HOH HOH . 
E 5 HOH A 53 553 75 HOH HOH . 
E 5 HOH A 54 554 20 HOH HOH . 
E 5 HOH A 55 555 39 HOH HOH . 
E 5 HOH A 56 556 42 HOH HOH . 
E 5 HOH A 57 557 26 HOH HOH . 
E 5 HOH A 58 558 5 HOH HOH . 
E 5 HOH A 59 559 87 HOH HOH . 
E 5 HOH A 60 560 28 HOH HOH . 
E 5 HOH A 61 561 113 HOH HOH . 
E 5 HOH A 62 562 49 HOH HOH . 
E 5 HOH A 63 563 120 HOH HOH . 
E 5 HOH A 64 564 143 HOH HOH . 
E 5 HOH A 65 565 13 HOH HOH . 
E 5 HOH A 66 566 70 HOH HOH . 
E 5 HOH A 67 567 121 HOH HOH . 
E 5 HOH A 68 568 8 HOH HOH . 
E 5 HOH A 69 569 54 HOH HOH . 
E 5 HOH A 70 570 135 HOH HOH . 
E 5 HOH A 71 571 116 HOH HOH . 
E 5 HOH A 72 572 25 HOH HOH . 
E 5 HOH A 73 573 9 HOH HOH . 
E 5 HOH A 74 574 102 HOH HOH . 
E 5 HOH A 75 575 89 HOH HOH . 
E 5 HOH A 76 576 65 HOH HOH . 
E 5 HOH A 77 577 30 HOH HOH . 
E 5 HOH A 78 578 84 HOH HOH . 
E 5 HOH A 79 579 123 HOH HOH . 
E 5 HOH A 80 580 11 HOH HOH . 
E 5 HOH A 81 581 131 HOH HOH . 
E 5 HOH A 82 582 61 HOH HOH . 
E 5 HOH A 83 583 22 HOH HOH . 
E 5 HOH A 84 584 119 HOH HOH . 
E 5 HOH A 85 585 114 HOH HOH . 
E 5 HOH A 86 586 17 HOH HOH . 
E 5 HOH A 87 587 58 HOH HOH . 
E 5 HOH A 88 588 136 HOH HOH . 
E 5 HOH A 89 589 35 HOH HOH . 
E 5 HOH A 90 590 69 HOH HOH . 
E 5 HOH A 91 591 137 HOH HOH . 
E 5 HOH A 92 592 12 HOH HOH . 
E 5 HOH A 93 593 15 HOH HOH . 
E 5 HOH A 94 594 104 HOH HOH . 
E 5 HOH A 95 595 72 HOH HOH . 
E 5 HOH A 96 596 86 HOH HOH . 
E 5 HOH A 97 597 115 HOH HOH . 
E 5 HOH A 98 598 91 HOH HOH . 
E 5 HOH A 99 599 31 HOH HOH . 
E 5 HOH A 100 600 85 HOH HOH . 
E 5 HOH A 101 601 55 HOH HOH . 
E 5 HOH A 102 602 64 HOH HOH . 
E 5 HOH A 103 603 88 HOH HOH . 
E 5 HOH A 104 604 41 HOH HOH . 
E 5 HOH A 105 605 68 HOH HOH . 
E 5 HOH A 106 606 37 HOH HOH . 
E 5 HOH A 107 607 66 HOH HOH . 
E 5 HOH A 108 608 40 HOH HOH . 
E 5 HOH A 109 609 73 HOH HOH . 
E 5 HOH A 110 610 96 HOH HOH . 
E 5 HOH A 111 611 126 HOH HOH . 
E 5 HOH A 112 612 51 HOH HOH . 
E 5 HOH A 113 613 132 HOH HOH . 
E 5 HOH A 114 614 129 HOH HOH . 
E 5 HOH A 115 615 107 HOH HOH . 
E 5 HOH A 116 616 122 HOH HOH . 
E 5 HOH A 117 617 147 HOH HOH . 
E 5 HOH A 118 618 74 HOH HOH . 
E 5 HOH A 119 619 67 HOH HOH . 
E 5 HOH A 120 620 53 HOH HOH . 
E 5 HOH A 121 621 110 HOH HOH . 
E 5 HOH A 122 622 108 HOH HOH . 
E 5 HOH A 123 623 93 HOH HOH . 
E 5 HOH A 124 624 32 HOH HOH . 
E 5 HOH A 125 625 33 HOH HOH . 
E 5 HOH A 126 626 60 HOH HOH . 
E 5 HOH A 127 627 77 HOH HOH . 
E 5 HOH A 128 628 82 HOH HOH . 
E 5 HOH A 129 629 105 HOH HOH . 
E 5 HOH A 130 630 149 HOH HOH . 
E 5 HOH A 131 631 148 HOH HOH . 
E 5 HOH A 132 632 106 HOH HOH . 
E 5 HOH A 133 633 101 HOH HOH . 
E 5 HOH A 134 634 138 HOH HOH . 
E 5 HOH A 135 635 81 HOH HOH . 
E 5 HOH A 136 636 78 HOH HOH . 
E 5 HOH A 137 637 109 HOH HOH . 
E 5 HOH A 138 638 139 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIN . . . C 3 6.803 0.419 23.623 1 17.33 ? C1 SIN 402 A 1 
HETATM 2 O O1 SIN . . . C 3 5.864 -0.345 23.939 1 17.61 ? O1 SIN 402 A 1 
HETATM 3 O O2 SIN . . . C 3 7.914 0.377 24.189 1 17 ? O2 SIN 402 A 1 
HETATM 4 C C2 SIN . . . C 3 6.563 1.424 22.52 1 17.38 ? C2 SIN 402 A 1 
HETATM 5 C C3 SIN . . . C 3 7.864 1.778 21.801 1 17.45 ? C3 SIN 402 A 1 
HETATM 6 C C4 SIN . . . C 3 7.609 2.878 20.797 1 17.63 ? C4 SIN 402 A 1 
HETATM 7 O O3 SIN . . . C 3 7.95 2.703 19.606 1 17.56 ? O3 SIN 402 A 1 
HETATM 8 O O4 SIN . . . C 3 7.066 3.929 21.195 1 17.61 ? O4 SIN 402 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#