data_6DB0 # _model_server_result.job_id AEhB9AyYm4In2agAoCY-0w _model_server_result.datetime_utc '2024-11-06 12:33:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6db0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 6DB0 # _exptl.entry_id 6DB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.58 _cell.angle_gamma 90 _cell.entry_id 6DB0 _cell.length_a 114.316 _cell.length_b 55.796 _cell.length_c 68.363 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,I,J 1 1 C,H,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_758 -x+2,y,-z+3 -1 0 0 0 1 0 0 0 -1 212.255443 0 204.434112 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6DB0 _atom_sites.fract_transf_matrix[1][1] 0.008748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000701 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 301 1 SO4 SO4 . E 3 G3J A 1 302 1 G3J LIG . F 3 G3J B 1 301 2 G3J LIG . G 4 EPE B 1 302 1 EPE EPE . H 5 EDO C 1 301 1 EDO EDO . I 6 HOH A 1 401 67 HOH HOH . I 6 HOH A 2 402 62 HOH HOH . I 6 HOH A 3 403 115 HOH HOH . I 6 HOH A 4 404 172 HOH HOH . I 6 HOH A 5 405 57 HOH HOH . I 6 HOH A 6 406 63 HOH HOH . I 6 HOH A 7 407 163 HOH HOH . I 6 HOH A 8 408 1 HOH HOH . I 6 HOH A 9 409 73 HOH HOH . I 6 HOH A 10 410 99 HOH HOH . I 6 HOH A 11 411 54 HOH HOH . I 6 HOH A 12 412 154 HOH HOH . I 6 HOH A 13 413 169 HOH HOH . I 6 HOH A 14 414 149 HOH HOH . I 6 HOH A 15 415 137 HOH HOH . I 6 HOH A 16 416 88 HOH HOH . I 6 HOH A 17 417 55 HOH HOH . I 6 HOH A 18 418 4 HOH HOH . I 6 HOH A 19 419 5 HOH HOH . I 6 HOH A 20 420 29 HOH HOH . I 6 HOH A 21 421 21 HOH HOH . I 6 HOH A 22 422 70 HOH HOH . I 6 HOH A 23 423 34 HOH HOH . I 6 HOH A 24 424 81 HOH HOH . I 6 HOH A 25 425 22 HOH HOH . I 6 HOH A 26 426 53 HOH HOH . I 6 HOH A 27 427 2 HOH HOH . I 6 HOH A 28 428 23 HOH HOH . I 6 HOH A 29 429 9 HOH HOH . I 6 HOH A 30 430 162 HOH HOH . I 6 HOH A 31 431 124 HOH HOH . I 6 HOH A 32 432 26 HOH HOH . I 6 HOH A 33 433 85 HOH HOH . I 6 HOH A 34 434 11 HOH HOH . I 6 HOH A 35 435 164 HOH HOH . I 6 HOH A 36 436 171 HOH HOH . I 6 HOH A 37 437 60 HOH HOH . I 6 HOH A 38 438 6 HOH HOH . I 6 HOH A 39 439 52 HOH HOH . I 6 HOH A 40 440 152 HOH HOH . I 6 HOH A 41 441 13 HOH HOH . I 6 HOH A 42 442 105 HOH HOH . I 6 HOH A 43 443 114 HOH HOH . I 6 HOH A 44 444 165 HOH HOH . I 6 HOH A 45 445 95 HOH HOH . I 6 HOH A 46 446 89 HOH HOH . I 6 HOH A 47 447 64 HOH HOH . I 6 HOH A 48 448 15 HOH HOH . I 6 HOH A 49 449 112 HOH HOH . I 6 HOH A 50 450 31 HOH HOH . I 6 HOH A 51 451 93 HOH HOH . I 6 HOH A 52 452 120 HOH HOH . I 6 HOH A 53 453 160 HOH HOH . I 6 HOH A 54 454 147 HOH HOH . I 6 HOH A 55 455 44 HOH HOH . I 6 HOH A 56 456 35 HOH HOH . I 6 HOH A 57 457 136 HOH HOH . I 6 HOH A 58 458 84 HOH HOH . I 6 HOH A 59 459 118 HOH HOH . I 6 HOH A 60 460 142 HOH HOH . I 6 HOH A 61 461 82 HOH HOH . I 6 HOH A 62 462 161 HOH HOH . I 6 HOH A 63 463 173 HOH HOH . I 6 HOH A 64 464 129 HOH HOH . I 6 HOH A 65 465 148 HOH HOH . I 6 HOH A 66 466 157 HOH HOH . I 6 HOH A 67 467 117 HOH HOH . I 6 HOH A 68 468 128 HOH HOH . I 6 HOH A 69 469 200 HOH HOH . I 6 HOH A 70 470 83 HOH HOH . I 6 HOH A 71 471 75 HOH HOH . I 6 HOH A 72 472 178 HOH HOH . I 6 HOH A 73 473 168 HOH HOH . I 6 HOH A 74 474 56 HOH HOH . J 6 HOH B 1 401 175 HOH HOH . J 6 HOH B 2 402 177 HOH HOH . J 6 HOH B 3 403 77 HOH HOH . J 6 HOH B 4 404 140 HOH HOH . J 6 HOH B 5 405 3 HOH HOH . J 6 HOH B 6 406 74 HOH HOH . J 6 HOH B 7 407 127 HOH HOH . J 6 HOH B 8 408 32 HOH HOH . J 6 HOH B 9 409 68 HOH HOH . J 6 HOH B 10 410 90 HOH HOH . J 6 HOH B 11 411 51 HOH HOH . J 6 HOH B 12 412 133 HOH HOH . J 6 HOH B 13 413 71 HOH HOH . J 6 HOH B 14 414 33 HOH HOH . J 6 HOH B 15 415 39 HOH HOH . J 6 HOH B 16 416 18 HOH HOH . J 6 HOH B 17 417 185 HOH HOH . J 6 HOH B 18 418 79 HOH HOH . J 6 HOH B 19 419 107 HOH HOH . J 6 HOH B 20 420 100 HOH HOH . J 6 HOH B 21 421 25 HOH HOH . J 6 HOH B 22 422 130 HOH HOH . J 6 HOH B 23 423 80 HOH HOH . J 6 HOH B 24 424 30 HOH HOH . J 6 HOH B 25 425 28 HOH HOH . J 6 HOH B 26 426 16 HOH HOH . J 6 HOH B 27 427 104 HOH HOH . J 6 HOH B 28 428 8 HOH HOH . J 6 HOH B 29 429 42 HOH HOH . J 6 HOH B 30 430 12 HOH HOH . J 6 HOH B 31 431 50 HOH HOH . J 6 HOH B 32 432 139 HOH HOH . J 6 HOH B 33 433 66 HOH HOH . J 6 HOH B 34 434 61 HOH HOH . J 6 HOH B 35 435 94 HOH HOH . J 6 HOH B 36 436 59 HOH HOH . J 6 HOH B 37 437 41 HOH HOH . J 6 HOH B 38 438 47 HOH HOH . J 6 HOH B 39 439 102 HOH HOH . J 6 HOH B 40 440 138 HOH HOH . J 6 HOH B 41 441 108 HOH HOH . J 6 HOH B 42 442 72 HOH HOH . J 6 HOH B 43 443 196 HOH HOH . J 6 HOH B 44 444 151 HOH HOH . J 6 HOH B 45 445 183 HOH HOH . J 6 HOH B 46 446 103 HOH HOH . J 6 HOH B 47 447 14 HOH HOH . J 6 HOH B 48 448 194 HOH HOH . J 6 HOH B 49 449 65 HOH HOH . J 6 HOH B 50 450 156 HOH HOH . J 6 HOH B 51 451 24 HOH HOH . J 6 HOH B 52 452 125 HOH HOH . J 6 HOH B 53 453 170 HOH HOH . J 6 HOH B 54 454 181 HOH HOH . J 6 HOH B 55 455 182 HOH HOH . J 6 HOH B 56 456 158 HOH HOH . J 6 HOH B 57 457 134 HOH HOH . J 6 HOH B 58 458 109 HOH HOH . J 6 HOH B 59 459 166 HOH HOH . J 6 HOH B 60 460 159 HOH HOH . J 6 HOH B 61 461 150 HOH HOH . J 6 HOH B 62 462 106 HOH HOH . J 6 HOH B 63 463 131 HOH HOH . J 6 HOH B 64 464 143 HOH HOH . J 6 HOH B 65 465 192 HOH HOH . J 6 HOH B 66 466 176 HOH HOH . J 6 HOH B 67 467 121 HOH HOH . J 6 HOH B 68 468 141 HOH HOH . J 6 HOH B 69 469 155 HOH HOH . J 6 HOH B 70 470 201 HOH HOH . J 6 HOH B 71 471 167 HOH HOH . J 6 HOH B 72 472 198 HOH HOH . J 6 HOH B 73 473 180 HOH HOH . J 6 HOH B 74 474 132 HOH HOH . J 6 HOH B 75 475 179 HOH HOH . J 6 HOH B 76 476 45 HOH HOH . J 6 HOH B 77 477 174 HOH HOH . J 6 HOH B 78 478 184 HOH HOH . J 6 HOH B 79 479 119 HOH HOH . K 6 HOH C 1 401 195 HOH HOH . K 6 HOH C 2 402 113 HOH HOH . K 6 HOH C 3 403 10 HOH HOH . K 6 HOH C 4 404 49 HOH HOH . K 6 HOH C 5 405 38 HOH HOH . K 6 HOH C 6 406 199 HOH HOH . K 6 HOH C 7 407 116 HOH HOH . K 6 HOH C 8 408 110 HOH HOH . K 6 HOH C 9 409 122 HOH HOH . K 6 HOH C 10 410 146 HOH HOH . K 6 HOH C 11 411 98 HOH HOH . K 6 HOH C 12 412 86 HOH HOH . K 6 HOH C 13 413 37 HOH HOH . K 6 HOH C 14 414 46 HOH HOH . K 6 HOH C 15 415 48 HOH HOH . K 6 HOH C 16 416 7 HOH HOH . K 6 HOH C 17 417 58 HOH HOH . K 6 HOH C 18 418 17 HOH HOH . K 6 HOH C 19 419 20 HOH HOH . K 6 HOH C 20 420 27 HOH HOH . K 6 HOH C 21 421 186 HOH HOH . K 6 HOH C 22 422 36 HOH HOH . K 6 HOH C 23 423 43 HOH HOH . K 6 HOH C 24 424 91 HOH HOH . K 6 HOH C 25 425 123 HOH HOH . K 6 HOH C 26 426 78 HOH HOH . K 6 HOH C 27 427 76 HOH HOH . K 6 HOH C 28 428 40 HOH HOH . K 6 HOH C 29 429 92 HOH HOH . K 6 HOH C 30 430 203 HOH HOH . K 6 HOH C 31 431 188 HOH HOH . K 6 HOH C 32 432 193 HOH HOH . K 6 HOH C 33 433 187 HOH HOH . K 6 HOH C 34 434 101 HOH HOH . K 6 HOH C 35 435 87 HOH HOH . K 6 HOH C 36 436 189 HOH HOH . K 6 HOH C 37 437 96 HOH HOH . K 6 HOH C 38 438 111 HOH HOH . K 6 HOH C 39 439 97 HOH HOH . K 6 HOH C 40 440 153 HOH HOH . K 6 HOH C 41 441 145 HOH HOH . K 6 HOH C 42 442 19 HOH HOH . K 6 HOH C 43 443 191 HOH HOH . K 6 HOH C 44 444 69 HOH HOH . K 6 HOH C 45 445 144 HOH HOH . K 6 HOH C 46 446 190 HOH HOH . K 6 HOH C 47 447 135 HOH HOH . K 6 HOH C 48 448 126 HOH HOH . K 6 HOH C 49 449 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 5 107.098 4.887 91.253 1 54.41 ? C1 EDO 301 C 1 HETATM 2 O O1 EDO . . . H 5 107.452 5.687 92.39 1 51.86 ? O1 EDO 301 C 1 HETATM 3 C C2 EDO . . . H 5 108.344 4.635 90.419 1 58 ? C2 EDO 301 C 1 HETATM 4 O O2 EDO . . . H 5 109.32 3.997 91.25 1 61.04 ? O2 EDO 301 C 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #