data_6DBC
#
_model_server_result.job_id            nMPiasmM4k60X-Bh7DAZfQ 
_model_server_result.datetime_utc      '2024-12-02 16:53:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dbc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":507}' 
#
_entry.id    6DBC 
#
_exptl.entry_id    6DBC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DBC 
_cell.length_a            52.394 
_cell.length_b            72.186 
_cell.length_c            31.975 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DBC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6DBC 
_atom_sites.fract_transf_matrix[1][1]    0.019086 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013853 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031274 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 501 1 EDO EDO . 
C 2 EDO A 1 502 2 EDO EDO . 
D 2 EDO A 1 503 3 EDO EDO . 
E 2 EDO A 1 504 4 EDO EDO . 
F 2 EDO A 1 505 5 EDO EDO . 
G 2 EDO A 1 506 6 EDO EDO . 
H 2 EDO A 1 507 7 EDO EDO . 
I 3 G3J A 1 508 1 G3J LIG . 
J 4 HOH A 1 601 114 HOH HOH . 
J 4 HOH A 2 602 144 HOH HOH . 
J 4 HOH A 3 603 181 HOH HOH . 
J 4 HOH A 4 604 60 HOH HOH . 
J 4 HOH A 5 605 135 HOH HOH . 
J 4 HOH A 6 606 77 HOH HOH . 
J 4 HOH A 7 607 13 HOH HOH . 
J 4 HOH A 8 608 110 HOH HOH . 
J 4 HOH A 9 609 1 HOH HOH . 
J 4 HOH A 10 610 165 HOH HOH . 
J 4 HOH A 11 611 28 HOH HOH . 
J 4 HOH A 12 612 5 HOH HOH . 
J 4 HOH A 13 613 153 HOH HOH . 
J 4 HOH A 14 614 82 HOH HOH . 
J 4 HOH A 15 615 40 HOH HOH . 
J 4 HOH A 16 616 45 HOH HOH . 
J 4 HOH A 17 617 88 HOH HOH . 
J 4 HOH A 18 618 15 HOH HOH . 
J 4 HOH A 19 619 9 HOH HOH . 
J 4 HOH A 20 620 26 HOH HOH . 
J 4 HOH A 21 621 96 HOH HOH . 
J 4 HOH A 22 622 19 HOH HOH . 
J 4 HOH A 23 623 79 HOH HOH . 
J 4 HOH A 24 624 87 HOH HOH . 
J 4 HOH A 25 625 22 HOH HOH . 
J 4 HOH A 26 626 21 HOH HOH . 
J 4 HOH A 27 627 72 HOH HOH . 
J 4 HOH A 28 628 112 HOH HOH . 
J 4 HOH A 29 629 23 HOH HOH . 
J 4 HOH A 30 630 151 HOH HOH . 
J 4 HOH A 31 631 115 HOH HOH . 
J 4 HOH A 32 632 37 HOH HOH . 
J 4 HOH A 33 633 74 HOH HOH . 
J 4 HOH A 34 634 2 HOH HOH . 
J 4 HOH A 35 635 80 HOH HOH . 
J 4 HOH A 36 636 44 HOH HOH . 
J 4 HOH A 37 637 53 HOH HOH . 
J 4 HOH A 38 638 102 HOH HOH . 
J 4 HOH A 39 639 189 HOH HOH . 
J 4 HOH A 40 640 38 HOH HOH . 
J 4 HOH A 41 641 41 HOH HOH . 
J 4 HOH A 42 642 70 HOH HOH . 
J 4 HOH A 43 643 121 HOH HOH . 
J 4 HOH A 44 644 32 HOH HOH . 
J 4 HOH A 45 645 108 HOH HOH . 
J 4 HOH A 46 646 39 HOH HOH . 
J 4 HOH A 47 647 164 HOH HOH . 
J 4 HOH A 48 648 14 HOH HOH . 
J 4 HOH A 49 649 185 HOH HOH . 
J 4 HOH A 50 650 167 HOH HOH . 
J 4 HOH A 51 651 61 HOH HOH . 
J 4 HOH A 52 652 172 HOH HOH . 
J 4 HOH A 53 653 91 HOH HOH . 
J 4 HOH A 54 654 42 HOH HOH . 
J 4 HOH A 55 655 159 HOH HOH . 
J 4 HOH A 56 656 20 HOH HOH . 
J 4 HOH A 57 657 55 HOH HOH . 
J 4 HOH A 58 658 107 HOH HOH . 
J 4 HOH A 59 659 46 HOH HOH . 
J 4 HOH A 60 660 89 HOH HOH . 
J 4 HOH A 61 661 29 HOH HOH . 
J 4 HOH A 62 662 25 HOH HOH . 
J 4 HOH A 63 663 75 HOH HOH . 
J 4 HOH A 64 664 146 HOH HOH . 
J 4 HOH A 65 665 16 HOH HOH . 
J 4 HOH A 66 666 6 HOH HOH . 
J 4 HOH A 67 667 113 HOH HOH . 
J 4 HOH A 68 668 49 HOH HOH . 
J 4 HOH A 69 669 33 HOH HOH . 
J 4 HOH A 70 670 127 HOH HOH . 
J 4 HOH A 71 671 62 HOH HOH . 
J 4 HOH A 72 672 24 HOH HOH . 
J 4 HOH A 73 673 76 HOH HOH . 
J 4 HOH A 74 674 8 HOH HOH . 
J 4 HOH A 75 675 100 HOH HOH . 
J 4 HOH A 76 676 3 HOH HOH . 
J 4 HOH A 77 677 163 HOH HOH . 
J 4 HOH A 78 678 17 HOH HOH . 
J 4 HOH A 79 679 18 HOH HOH . 
J 4 HOH A 80 680 149 HOH HOH . 
J 4 HOH A 81 681 65 HOH HOH . 
J 4 HOH A 82 682 93 HOH HOH . 
J 4 HOH A 83 683 11 HOH HOH . 
J 4 HOH A 84 684 7 HOH HOH . 
J 4 HOH A 85 685 177 HOH HOH . 
J 4 HOH A 86 686 81 HOH HOH . 
J 4 HOH A 87 687 166 HOH HOH . 
J 4 HOH A 88 688 54 HOH HOH . 
J 4 HOH A 89 689 69 HOH HOH . 
J 4 HOH A 90 690 52 HOH HOH . 
J 4 HOH A 91 691 12 HOH HOH . 
J 4 HOH A 92 692 59 HOH HOH . 
J 4 HOH A 93 693 141 HOH HOH . 
J 4 HOH A 94 694 184 HOH HOH . 
J 4 HOH A 95 695 51 HOH HOH . 
J 4 HOH A 96 696 109 HOH HOH . 
J 4 HOH A 97 697 138 HOH HOH . 
J 4 HOH A 98 698 174 HOH HOH . 
J 4 HOH A 99 699 105 HOH HOH . 
J 4 HOH A 100 700 34 HOH HOH . 
J 4 HOH A 101 701 43 HOH HOH . 
J 4 HOH A 102 702 123 HOH HOH . 
J 4 HOH A 103 703 90 HOH HOH . 
J 4 HOH A 104 704 118 HOH HOH . 
J 4 HOH A 105 705 4 HOH HOH . 
J 4 HOH A 106 706 139 HOH HOH . 
J 4 HOH A 107 707 68 HOH HOH . 
J 4 HOH A 108 708 158 HOH HOH . 
J 4 HOH A 109 709 147 HOH HOH . 
J 4 HOH A 110 710 161 HOH HOH . 
J 4 HOH A 111 711 73 HOH HOH . 
J 4 HOH A 112 712 101 HOH HOH . 
J 4 HOH A 113 713 78 HOH HOH . 
J 4 HOH A 114 714 27 HOH HOH . 
J 4 HOH A 115 715 152 HOH HOH . 
J 4 HOH A 116 716 10 HOH HOH . 
J 4 HOH A 117 717 148 HOH HOH . 
J 4 HOH A 118 718 83 HOH HOH . 
J 4 HOH A 119 719 134 HOH HOH . 
J 4 HOH A 120 720 48 HOH HOH . 
J 4 HOH A 121 721 124 HOH HOH . 
J 4 HOH A 122 722 36 HOH HOH . 
J 4 HOH A 123 723 143 HOH HOH . 
J 4 HOH A 124 724 154 HOH HOH . 
J 4 HOH A 125 725 129 HOH HOH . 
J 4 HOH A 126 726 47 HOH HOH . 
J 4 HOH A 127 727 155 HOH HOH . 
J 4 HOH A 128 728 66 HOH HOH . 
J 4 HOH A 129 729 95 HOH HOH . 
J 4 HOH A 130 730 57 HOH HOH . 
J 4 HOH A 131 731 145 HOH HOH . 
J 4 HOH A 132 732 162 HOH HOH . 
J 4 HOH A 133 733 64 HOH HOH . 
J 4 HOH A 134 734 183 HOH HOH . 
J 4 HOH A 135 735 92 HOH HOH . 
J 4 HOH A 136 736 71 HOH HOH . 
J 4 HOH A 137 737 150 HOH HOH . 
J 4 HOH A 138 738 63 HOH HOH . 
J 4 HOH A 139 739 160 HOH HOH . 
J 4 HOH A 140 740 133 HOH HOH . 
J 4 HOH A 141 741 58 HOH HOH . 
J 4 HOH A 142 742 188 HOH HOH . 
J 4 HOH A 143 743 120 HOH HOH . 
J 4 HOH A 144 744 170 HOH HOH . 
J 4 HOH A 145 745 156 HOH HOH . 
J 4 HOH A 146 746 84 HOH HOH . 
J 4 HOH A 147 747 94 HOH HOH . 
J 4 HOH A 148 748 137 HOH HOH . 
J 4 HOH A 149 749 98 HOH HOH . 
J 4 HOH A 150 750 173 HOH HOH . 
J 4 HOH A 151 751 119 HOH HOH . 
J 4 HOH A 152 752 142 HOH HOH . 
J 4 HOH A 153 753 104 HOH HOH . 
J 4 HOH A 154 754 178 HOH HOH . 
J 4 HOH A 155 755 122 HOH HOH . 
J 4 HOH A 156 756 99 HOH HOH . 
J 4 HOH A 157 757 86 HOH HOH . 
J 4 HOH A 158 758 169 HOH HOH . 
J 4 HOH A 159 759 126 HOH HOH . 
J 4 HOH A 160 760 117 HOH HOH . 
J 4 HOH A 161 761 85 HOH HOH . 
J 4 HOH A 162 762 30 HOH HOH . 
J 4 HOH A 163 763 131 HOH HOH . 
J 4 HOH A 164 764 168 HOH HOH . 
J 4 HOH A 165 765 136 HOH HOH . 
J 4 HOH A 166 766 187 HOH HOH . 
J 4 HOH A 167 767 128 HOH HOH . 
J 4 HOH A 168 768 97 HOH HOH . 
J 4 HOH A 169 769 106 HOH HOH . 
J 4 HOH A 170 770 130 HOH HOH . 
J 4 HOH A 171 771 31 HOH HOH . 
J 4 HOH A 172 772 111 HOH HOH . 
J 4 HOH A 173 773 35 HOH HOH . 
J 4 HOH A 174 774 67 HOH HOH . 
J 4 HOH A 175 775 116 HOH HOH . 
J 4 HOH A 176 776 175 HOH HOH . 
J 4 HOH A 177 777 186 HOH HOH . 
J 4 HOH A 178 778 140 HOH HOH . 
J 4 HOH A 179 779 132 HOH HOH . 
J 4 HOH A 180 780 157 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 2 21.64 68.094 45.479 1 37.96 ? C1 EDO 507 A 1 
HETATM 2 O O1 EDO . . . H 2 22.793 68.941 45.431 1 38.92 ? O1 EDO 507 A 1 
HETATM 3 C C2 EDO . . . H 2 21.129 67.862 44.064 1 37.86 ? C2 EDO 507 A 1 
HETATM 4 O O2 EDO . . . H 2 22.061 67.065 43.326 1 37.42 ? O2 EDO 507 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#