data_6DBE # _model_server_result.job_id rbqn-2RT2et9dOP6_bZ4UA _model_server_result.datetime_utc '2024-11-21 23:02:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6DBE # _exptl.entry_id 6DBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6DBE _cell.length_a 58.615 _cell.length_b 58.615 _cell.length_c 100.527 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,C,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.004 ? disulf ? disulf2 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.091 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.072 ? disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 6DBE _atom_sites.fract_transf_matrix[1][1] 0.01706 _atom_sites.fract_transf_matrix[1][2] 0.00985 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EPE B 1 201 1 EPE EPE . D 3 HOH A 1 201 105 HOH HOH . D 3 HOH A 2 202 91 HOH HOH . D 3 HOH A 3 203 111 HOH HOH . D 3 HOH A 4 204 51 HOH HOH . D 3 HOH A 5 205 84 HOH HOH . D 3 HOH A 6 206 23 HOH HOH . D 3 HOH A 7 207 44 HOH HOH . D 3 HOH A 8 208 53 HOH HOH . D 3 HOH A 9 209 96 HOH HOH . D 3 HOH A 10 210 38 HOH HOH . D 3 HOH A 11 211 61 HOH HOH . D 3 HOH A 12 212 27 HOH HOH . D 3 HOH A 13 213 28 HOH HOH . D 3 HOH A 14 214 47 HOH HOH . D 3 HOH A 15 215 40 HOH HOH . D 3 HOH A 16 216 34 HOH HOH . D 3 HOH A 17 217 17 HOH HOH . D 3 HOH A 18 218 45 HOH HOH . D 3 HOH A 19 219 1 HOH HOH . D 3 HOH A 20 220 6 HOH HOH . D 3 HOH A 21 221 9 HOH HOH . D 3 HOH A 22 222 175 HOH HOH . D 3 HOH A 23 223 104 HOH HOH . D 3 HOH A 24 224 64 HOH HOH . D 3 HOH A 25 225 57 HOH HOH . D 3 HOH A 26 226 149 HOH HOH . D 3 HOH A 27 227 103 HOH HOH . D 3 HOH A 28 228 79 HOH HOH . D 3 HOH A 29 229 98 HOH HOH . D 3 HOH A 30 230 19 HOH HOH . D 3 HOH A 31 231 114 HOH HOH . D 3 HOH A 32 232 2 HOH HOH . D 3 HOH A 33 233 5 HOH HOH . D 3 HOH A 34 234 119 HOH HOH . D 3 HOH A 35 235 3 HOH HOH . D 3 HOH A 36 236 113 HOH HOH . D 3 HOH A 37 237 59 HOH HOH . D 3 HOH A 38 238 10 HOH HOH . D 3 HOH A 39 239 154 HOH HOH . D 3 HOH A 40 240 26 HOH HOH . D 3 HOH A 41 241 37 HOH HOH . D 3 HOH A 42 242 170 HOH HOH . D 3 HOH A 43 243 135 HOH HOH . D 3 HOH A 44 244 39 HOH HOH . D 3 HOH A 45 245 72 HOH HOH . D 3 HOH A 46 246 165 HOH HOH . D 3 HOH A 47 247 107 HOH HOH . D 3 HOH A 48 248 148 HOH HOH . D 3 HOH A 49 249 85 HOH HOH . D 3 HOH A 50 250 12 HOH HOH . D 3 HOH A 51 251 55 HOH HOH . D 3 HOH A 52 252 68 HOH HOH . D 3 HOH A 53 253 169 HOH HOH . D 3 HOH A 54 254 117 HOH HOH . D 3 HOH A 55 255 29 HOH HOH . D 3 HOH A 56 256 46 HOH HOH . D 3 HOH A 57 257 56 HOH HOH . D 3 HOH A 58 258 16 HOH HOH . D 3 HOH A 59 259 20 HOH HOH . D 3 HOH A 60 260 118 HOH HOH . D 3 HOH A 61 261 32 HOH HOH . D 3 HOH A 62 262 67 HOH HOH . D 3 HOH A 63 263 125 HOH HOH . D 3 HOH A 64 264 50 HOH HOH . D 3 HOH A 65 265 35 HOH HOH . D 3 HOH A 66 266 52 HOH HOH . D 3 HOH A 67 267 180 HOH HOH . D 3 HOH A 68 268 7 HOH HOH . D 3 HOH A 69 269 115 HOH HOH . D 3 HOH A 70 270 134 HOH HOH . D 3 HOH A 71 271 161 HOH HOH . D 3 HOH A 72 272 123 HOH HOH . D 3 HOH A 73 273 77 HOH HOH . D 3 HOH A 74 274 130 HOH HOH . D 3 HOH A 75 275 155 HOH HOH . D 3 HOH A 76 276 65 HOH HOH . D 3 HOH A 77 277 159 HOH HOH . D 3 HOH A 78 278 76 HOH HOH . D 3 HOH A 79 279 81 HOH HOH . D 3 HOH A 80 280 25 HOH HOH . D 3 HOH A 81 281 156 HOH HOH . D 3 HOH A 82 282 128 HOH HOH . D 3 HOH A 83 283 108 HOH HOH . D 3 HOH A 84 284 88 HOH HOH . D 3 HOH A 85 285 89 HOH HOH . D 3 HOH A 86 286 181 HOH HOH . D 3 HOH A 87 287 70 HOH HOH . D 3 HOH A 88 288 62 HOH HOH . E 3 HOH B 1 301 13 HOH HOH . E 3 HOH B 2 302 174 HOH HOH . E 3 HOH B 3 303 112 HOH HOH . E 3 HOH B 4 304 75 HOH HOH . E 3 HOH B 5 305 133 HOH HOH . E 3 HOH B 6 306 24 HOH HOH . E 3 HOH B 7 307 90 HOH HOH . E 3 HOH B 8 308 86 HOH HOH . E 3 HOH B 9 309 80 HOH HOH . E 3 HOH B 10 310 87 HOH HOH . E 3 HOH B 11 311 41 HOH HOH . E 3 HOH B 12 312 138 HOH HOH . E 3 HOH B 13 313 172 HOH HOH . E 3 HOH B 14 314 21 HOH HOH . E 3 HOH B 15 315 82 HOH HOH . E 3 HOH B 16 316 106 HOH HOH . E 3 HOH B 17 317 124 HOH HOH . E 3 HOH B 18 318 4 HOH HOH . E 3 HOH B 19 319 11 HOH HOH . E 3 HOH B 20 320 54 HOH HOH . E 3 HOH B 21 321 78 HOH HOH . E 3 HOH B 22 322 15 HOH HOH . E 3 HOH B 23 323 151 HOH HOH . E 3 HOH B 24 324 163 HOH HOH . E 3 HOH B 25 325 144 HOH HOH . E 3 HOH B 26 326 36 HOH HOH . E 3 HOH B 27 327 145 HOH HOH . E 3 HOH B 28 328 49 HOH HOH . E 3 HOH B 29 329 74 HOH HOH . E 3 HOH B 30 330 60 HOH HOH . E 3 HOH B 31 331 42 HOH HOH . E 3 HOH B 32 332 22 HOH HOH . E 3 HOH B 33 333 18 HOH HOH . E 3 HOH B 34 334 129 HOH HOH . E 3 HOH B 35 335 58 HOH HOH . E 3 HOH B 36 336 95 HOH HOH . E 3 HOH B 37 337 131 HOH HOH . E 3 HOH B 38 338 14 HOH HOH . E 3 HOH B 39 339 31 HOH HOH . E 3 HOH B 40 340 109 HOH HOH . E 3 HOH B 41 341 43 HOH HOH . E 3 HOH B 42 342 8 HOH HOH . E 3 HOH B 43 343 102 HOH HOH . E 3 HOH B 44 344 176 HOH HOH . E 3 HOH B 45 345 73 HOH HOH . E 3 HOH B 46 346 94 HOH HOH . E 3 HOH B 47 347 71 HOH HOH . E 3 HOH B 48 348 183 HOH HOH . E 3 HOH B 49 349 110 HOH HOH . E 3 HOH B 50 350 136 HOH HOH . E 3 HOH B 51 351 63 HOH HOH . E 3 HOH B 52 352 139 HOH HOH . E 3 HOH B 53 353 137 HOH HOH . E 3 HOH B 54 354 168 HOH HOH . E 3 HOH B 55 355 93 HOH HOH . E 3 HOH B 56 356 99 HOH HOH . E 3 HOH B 57 357 120 HOH HOH . E 3 HOH B 58 358 101 HOH HOH . E 3 HOH B 59 359 166 HOH HOH . E 3 HOH B 60 360 66 HOH HOH . E 3 HOH B 61 361 147 HOH HOH . E 3 HOH B 62 362 48 HOH HOH . E 3 HOH B 63 363 30 HOH HOH . E 3 HOH B 64 364 97 HOH HOH . E 3 HOH B 65 365 121 HOH HOH . E 3 HOH B 66 366 142 HOH HOH . E 3 HOH B 67 367 146 HOH HOH . E 3 HOH B 68 368 122 HOH HOH . E 3 HOH B 69 369 164 HOH HOH . E 3 HOH B 70 370 132 HOH HOH . E 3 HOH B 71 371 153 HOH HOH . E 3 HOH B 72 372 116 HOH HOH . E 3 HOH B 73 373 179 HOH HOH . E 3 HOH B 74 374 150 HOH HOH . E 3 HOH B 75 375 83 HOH HOH . E 3 HOH B 76 376 33 HOH HOH . E 3 HOH B 77 377 100 HOH HOH . E 3 HOH B 78 378 184 HOH HOH . E 3 HOH B 79 379 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 2 6.09 37.809 8.164 1 18.37 ? N1 EPE 201 B 1 HETATM 2 C C2 EPE . . . C 2 6.741 37.509 6.889 1 18.18 ? C2 EPE 201 B 1 HETATM 3 C C3 EPE . . . C 2 7.41 36.15 6.836 1 18.68 ? C3 EPE 201 B 1 HETATM 4 N N4 EPE . . . C 2 8.244 35.787 8.008 1 20.44 ? N4 EPE 201 B 1 HETATM 5 C C5 EPE . . . C 2 7.727 36.217 9.304 1 19.24 ? C5 EPE 201 B 1 HETATM 6 C C6 EPE . . . C 2 6.93 37.524 9.334 1 20.7 ? C6 EPE 201 B 1 HETATM 7 C C7 EPE . . . C 2 8.778 34.389 7.938 1 24.32 ? C7 EPE 201 B 1 HETATM 8 C C8 EPE . . . C 2 10.078 34.096 8.722 1 28.63 ? C8 EPE 201 B 1 HETATM 9 O O8 EPE . . . C 2 10.675 32.762 8.559 1 30.85 ? O8 EPE 201 B 1 HETATM 10 C C9 EPE . . . C 2 5.577 39.201 8.155 1 22.35 ? C9 EPE 201 B 1 HETATM 11 C C10 EPE . . . C 2 4.253 39.279 8.891 1 27.32 ? C10 EPE 201 B 1 HETATM 12 S S EPE . . . C 2 3.585 40.964 8.977 1 39.54 ? S EPE 201 B 1 HETATM 13 O O1S EPE . . . C 2 4.572 41.906 9.625 1 44.91 ? O1S EPE 201 B 1 HETATM 14 O O2S EPE . . . C 2 3.345 41.534 7.595 1 38.43 ? O2S EPE 201 B 1 HETATM 15 O O3S EPE . . . C 2 2.285 40.944 9.759 1 43.12 ? O3S EPE 201 B 1 HETATM 16 H H21 EPE . . . C 2 7.421 38.184 6.742 1 21.85 ? H21 EPE 201 B 1 HETATM 17 H H22 EPE . . . C 2 6.086 37.572 6.177 1 21.85 ? H22 EPE 201 B 1 HETATM 18 H H31 EPE . . . C 2 8.005 36.165 6.07 1 22.45 ? H31 EPE 201 B 1 HETATM 19 H H32 EPE . . . C 2 6.74 35.464 6.69 1 22.45 ? H32 EPE 201 B 1 HETATM 20 H H51 EPE . . . C 2 8.5 36.352 9.874 1 23.12 ? H51 EPE 201 B 1 HETATM 21 H H52 EPE . . . C 2 7.188 35.506 9.686 1 23.12 ? H52 EPE 201 B 1 HETATM 22 H H61 EPE . . . C 2 7.567 38.252 9.412 1 24.87 ? H61 EPE 201 B 1 HETATM 23 H H62 EPE . . . C 2 6.37 37.532 10.126 1 24.87 ? H62 EPE 201 B 1 HETATM 24 H H71 EPE . . . C 2 8.929 34.173 7.004 1 29.21 ? H71 EPE 201 B 1 HETATM 25 H H72 EPE . . . C 2 8.092 33.793 8.277 1 29.21 ? H72 EPE 201 B 1 HETATM 26 H H81 EPE . . . C 2 9.894 34.229 9.665 1 34.39 ? H81 EPE 201 B 1 HETATM 27 H H82 EPE . . . C 2 10.741 34.751 8.45 1 34.39 ? H82 EPE 201 B 1 HETATM 28 H HO8 EPE . . . C 2 11.521 32.832 8.533 1 37.06 ? HO8 EPE 201 B 1 HETATM 29 H H91 EPE . . . C 2 6.218 39.773 8.606 1 26.85 ? H91 EPE 201 B 1 HETATM 30 H H92 EPE . . . C 2 5.465 39.498 7.239 1 26.85 ? H92 EPE 201 B 1 HETATM 31 H H101 EPE . . . C 2 3.611 38.713 8.435 1 32.82 ? H101 EPE 201 B 1 HETATM 32 H H102 EPE . . . C 2 4.378 38.947 9.794 1 32.82 ? H102 EPE 201 B 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #