data_6DBH # _model_server_result.job_id Q8plPJNiHtj3_gOp-kgJXw _model_server_result.datetime_utc '2024-11-22 07:08:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6DBH # _exptl.entry_id 6DBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{2-[(2,3-dioxo-1-pentyl-2,3-dihydro-1H-indol-5-yl)sulfanyl]ethyl}benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.57 _cell.angle_gamma 90 _cell.entry_id 6DBH _cell.length_a 92.942 _cell.length_b 62.189 _cell.length_c 120.083 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C22 H23 N O4 S' _chem_comp.formula_weight 397.487 _chem_comp.id G3S _chem_comp.mon_nstd_flag . _chem_comp.name '4-{2-[(2,3-dioxo-1-pentyl-2,3-dihydro-1H-indol-5-yl)sulfanyl]ethyl}benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C02 G3S doub 83 n n C02 O01 G3S sing 84 n n C02 C04 G3S sing 85 n n C05 C06 G3S doub 86 n y C05 C04 G3S sing 87 n y C06 C07 G3S sing 88 n y C04 C09 G3S doub 89 n y C11 S12 G3S sing 90 n n C11 C10 G3S sing 91 n n S12 C13 G3S sing 92 n n C07 C08 G3S doub 93 n y C07 C10 G3S sing 94 n n C09 C08 G3S sing 95 n y C13 C18 G3S doub 96 n y C13 C14 G3S sing 97 n y C18 C17 G3S sing 98 n y C14 C15 G3S doub 99 n y C17 C16 G3S doub 100 n y C15 C16 G3S sing 101 n y C15 C22 G3S sing 102 n n C16 N19 G3S sing 103 n n C28 C27 G3S sing 104 n n C22 O23 G3S doub 105 n n C22 C20 G3S sing 106 n n C25 C24 G3S sing 107 n n C25 C26 G3S sing 108 n n N19 C20 G3S sing 109 n n N19 C24 G3S sing 110 n n C27 C26 G3S sing 111 n n C20 O21 G3S doub 112 n n C10 H1 G3S sing 113 n n C10 H2 G3S sing 114 n n C17 H3 G3S sing 115 n n C24 H4 G3S sing 116 n n C24 H5 G3S sing 117 n n C26 H6 G3S sing 118 n n C26 H7 G3S sing 119 n n C28 H8 G3S sing 120 n n C28 H9 G3S sing 121 n n C28 H10 G3S sing 122 n n C05 H11 G3S sing 123 n n C06 H12 G3S sing 124 n n C08 H13 G3S sing 125 n n C09 H14 G3S sing 126 n n C11 H15 G3S sing 127 n n C11 H16 G3S sing 128 n n C14 H17 G3S sing 129 n n C18 H18 G3S sing 130 n n C25 H19 G3S sing 131 n n C25 H20 G3S sing 132 n n C27 H21 G3S sing 133 n n C27 H22 G3S sing 134 n n O01 H23 G3S sing 135 n n # _atom_sites.entry_id 6DBH _atom_sites.fract_transf_matrix[1][1] 0.010759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002399 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G3S A 1 501 476 G3S LIG . D 3 CL A 1 502 477 CL CL . E 2 G3S B 1 501 475 G3S LIG . F 3 CL B 1 502 476 CL CL . G 3 CL B 1 503 477 CL CL . H 4 HOH A 1 601 485 HOH HOH . H 4 HOH A 2 602 481 HOH HOH . H 4 HOH A 3 603 480 HOH HOH . H 4 HOH A 4 604 489 HOH HOH . H 4 HOH A 5 605 479 HOH HOH . H 4 HOH A 6 606 484 HOH HOH . H 4 HOH A 7 607 478 HOH HOH . H 4 HOH A 8 608 488 HOH HOH . H 4 HOH A 9 609 482 HOH HOH . H 4 HOH A 10 610 483 HOH HOH . H 4 HOH A 11 611 487 HOH HOH . H 4 HOH A 12 612 490 HOH HOH . H 4 HOH A 13 613 491 HOH HOH . H 4 HOH A 14 614 486 HOH HOH . H 4 HOH A 15 615 494 HOH HOH . H 4 HOH A 16 616 493 HOH HOH . H 4 HOH A 17 617 492 HOH HOH . I 4 HOH B 1 601 478 HOH HOH . I 4 HOH B 2 602 482 HOH HOH . I 4 HOH B 3 603 481 HOH HOH . I 4 HOH B 4 604 488 HOH HOH . I 4 HOH B 5 605 483 HOH HOH . I 4 HOH B 6 606 479 HOH HOH . I 4 HOH B 7 607 486 HOH HOH . I 4 HOH B 8 608 484 HOH HOH . I 4 HOH B 9 609 489 HOH HOH . I 4 HOH B 10 610 492 HOH HOH . I 4 HOH B 11 611 493 HOH HOH . I 4 HOH B 12 612 490 HOH HOH . I 4 HOH B 13 613 487 HOH HOH . I 4 HOH B 14 614 485 HOH HOH . I 4 HOH B 15 615 491 HOH HOH . I 4 HOH B 16 616 480 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 G3S . . . C 2 111.946 30.983 10.017 1 55.03 ? C10 G3S 501 A 1 HETATM 2 C C13 G3S . . . C 2 111.123 28.045 10.671 1 60.08 ? C13 G3S 501 A 1 HETATM 3 C C15 G3S . . . C 2 111.157 27.339 12.976 1 60.7 ? C15 G3S 501 A 1 HETATM 4 C C17 G3S . . . C 2 108.994 28.032 11.941 1 63.45 ? C17 G3S 501 A 1 HETATM 5 C C20 G3S . . . C 2 110.455 26.815 15.119 1 67.32 ? C20 G3S 501 A 1 HETATM 6 C C22 G3S . . . C 2 111.457 26.879 14.312 1 67.6 ? C22 G3S 501 A 1 HETATM 7 C C24 G3S . . . C 2 107.96 27.228 15.205 1 55.98 ? C24 G3S 501 A 1 HETATM 8 C C26 G3S . . . C 2 105.755 26.096 15.33 1 46.38 ? C26 G3S 501 A 1 HETATM 9 C C28 G3S . . . C 2 104.78 24.723 13.482 1 39.52 ? C28 G3S 501 A 1 HETATM 10 C C02 G3S . . . C 2 107.304 33.367 7.437 1 57.8 ? C02 G3S 501 A 1 HETATM 11 C C04 G3S . . . C 2 108.527 32.748 8.109 1 56.78 ? C04 G3S 501 A 1 HETATM 12 C C05 G3S . . . C 2 109.762 32.78 7.479 1 53.08 ? C05 G3S 501 A 1 HETATM 13 C C06 G3S . . . C 2 110.865 32.213 8.094 1 51.41 ? C06 G3S 501 A 1 HETATM 14 C C07 G3S . . . C 2 110.732 31.61 9.334 1 51.25 ? C07 G3S 501 A 1 HETATM 15 C C08 G3S . . . C 2 109.499 31.579 9.963 1 50.15 ? C08 G3S 501 A 1 HETATM 16 C C09 G3S . . . C 2 108.394 32.145 9.349 1 54.32 ? C09 G3S 501 A 1 HETATM 17 C C11 G3S . . . C 2 112.674 30.045 9.052 1 59.28 ? C11 G3S 501 A 1 HETATM 18 C C14 G3S . . . C 2 111.834 27.574 11.803 1 57.07 ? C14 G3S 501 A 1 HETATM 19 C C16 G3S . . . C 2 109.665 27.583 13.04 1 61.59 ? C16 G3S 501 A 1 HETATM 20 C C18 G3S . . . C 2 109.699 28.27 10.739 1 61.92 ? C18 G3S 501 A 1 HETATM 21 C C25 G3S . . . C 2 107.081 26.153 14.575 1 49.31 ? C25 G3S 501 A 1 HETATM 22 C C27 G3S . . . C 2 105.014 24.805 14.989 1 44.62 ? C27 G3S 501 A 1 HETATM 23 N N19 G3S . . . C 2 109.271 27.182 14.586 1 59.37 ? N19 G3S 501 A 1 HETATM 24 O O01 G3S . . . C 2 106.185 32.798 7.535 1 57.68 -1 O01 G3S 501 A 1 HETATM 25 O O03 G3S . . . C 2 107.415 34.436 6.782 1 59.01 ? O03 G3S 501 A 1 HETATM 26 O O21 G3S . . . C 2 110.568 26.456 16.242 1 69.03 ? O21 G3S 501 A 1 HETATM 27 O O23 G3S . . . C 2 112.551 26.587 14.652 1 69.8 ? O23 G3S 501 A 1 HETATM 28 S S12 G3S . . . C 2 111.974 28.365 9.099 1 59.39 ? S12 G3S 501 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #