data_6DBN # _model_server_result.job_id z2bTwiCmdVFPs3YWjMHiIA _model_server_result.datetime_utc '2024-11-22 23:34:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 6DBN # _exptl.entry_id 6DBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1S)-2,2-difluorocyclopropyl][(1R,5S)-3-{2-[(1-methyl-1H-pyrazol-4-yl)amino]pyrimidin-4-yl}-3,8-diazabicyclo[3.2.1]octan-8-yl]methanone' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DBN _cell.length_a 45.51 _cell.length_b 88.422 _cell.length_c 145.914 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 195 A GLU 1033 1_555 A N PTR 196 A PTR 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C PTR 196 A PTR 1034 1_555 A N PTR 197 A PTR 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C PTR 197 A PTR 1035 1_555 A N THR 198 A THR 1036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C18 H21 F2 N7 O' _chem_comp.formula_weight 389.402 _chem_comp.id G4J _chem_comp.mon_nstd_flag . _chem_comp.name '[(1S)-2,2-difluorocyclopropyl][(1R,5S)-3-{2-[(1-methyl-1H-pyrazol-4-yl)amino]pyrimidin-4-yl}-3,8-diazabicyclo[3.2.1]octan-8-yl]methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C18 G4J sing 83 n n O1 C15 G4J doub 84 n n C17 C18 G4J sing 85 n n C17 C16 G4J sing 86 n n C18 F2 G4J sing 87 n n C18 C16 G4J sing 88 n n C15 C16 G4J sing 89 n n C15 N7 G4J sing 90 n n C1 N1 G4J sing 91 n n C10 N7 G4J sing 92 n n C10 C11 G4J sing 93 n n C10 C9 G4J sing 94 n n N7 C13 G4J sing 95 n n C11 C12 G4J sing 96 n n N1 N2 G4J sing 97 n y N1 C2 G4J sing 98 n y C9 N6 G4J sing 99 n n C12 C13 G4J sing 100 n n C13 C14 G4J sing 101 n n N2 C4 G4J doub 102 n y C2 C3 G4J doub 103 n y N6 C14 G4J sing 104 n n N6 C8 G4J sing 105 n n C4 C3 G4J sing 106 n y C3 N3 G4J sing 107 n n N5 C8 G4J doub 108 n y N5 C5 G4J sing 109 n y C8 C7 G4J sing 110 n y N3 C5 G4J sing 111 n n C5 N4 G4J doub 112 n y C7 C6 G4J doub 113 n y N4 C6 G4J sing 114 n y N3 H9 G4J sing 115 n n C4 H8 G4J sing 116 n n C7 H11 G4J sing 117 n n C6 H10 G4J sing 118 n n C9 H13 G4J sing 119 n n C9 H12 G4J sing 120 n n C13 H2 G4J sing 121 n n C16 H3 G4J sing 122 n n C1 H4 G4J sing 123 n n C1 H5 G4J sing 124 n n C1 H6 G4J sing 125 n n C2 H7 G4J sing 126 n n C10 H1 G4J sing 127 n n C11 H15 G4J sing 128 n n C11 H14 G4J sing 129 n n C12 H17 G4J sing 130 n n C12 H16 G4J sing 131 n n C14 H19 G4J sing 132 n n C14 H18 G4J sing 133 n n C17 H20 G4J sing 134 n n C17 H21 G4J sing 135 n n # _atom_sites.entry_id 6DBN _atom_sites.fract_transf_matrix[1][1] 0.021973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G4J A 1 4000 4000 G4J PFE . C 3 HOH A 1 4101 21 HOH HOH . C 3 HOH A 2 4102 82 HOH HOH . C 3 HOH A 3 4103 69 HOH HOH . C 3 HOH A 4 4104 88 HOH HOH . C 3 HOH A 5 4105 81 HOH HOH . C 3 HOH A 6 4106 73 HOH HOH . C 3 HOH A 7 4107 75 HOH HOH . C 3 HOH A 8 4108 92 HOH HOH . C 3 HOH A 9 4109 22 HOH HOH . C 3 HOH A 10 4110 68 HOH HOH . C 3 HOH A 11 4111 58 HOH HOH . C 3 HOH A 12 4112 87 HOH HOH . C 3 HOH A 13 4113 78 HOH HOH . C 3 HOH A 14 4114 98 HOH HOH . C 3 HOH A 15 4115 79 HOH HOH . C 3 HOH A 16 4116 71 HOH HOH . C 3 HOH A 17 4117 89 HOH HOH . C 3 HOH A 18 4118 53 HOH HOH . C 3 HOH A 19 4119 1 HOH HOH . C 3 HOH A 20 4120 72 HOH HOH . C 3 HOH A 21 4121 23 HOH HOH . C 3 HOH A 22 4122 44 HOH HOH . C 3 HOH A 23 4123 49 HOH HOH . C 3 HOH A 24 4124 40 HOH HOH . C 3 HOH A 25 4125 28 HOH HOH . C 3 HOH A 26 4126 2 HOH HOH . C 3 HOH A 27 4127 37 HOH HOH . C 3 HOH A 28 4128 38 HOH HOH . C 3 HOH A 29 4129 10 HOH HOH . C 3 HOH A 30 4130 90 HOH HOH . C 3 HOH A 31 4131 14 HOH HOH . C 3 HOH A 32 4132 64 HOH HOH . C 3 HOH A 33 4133 18 HOH HOH . C 3 HOH A 34 4134 95 HOH HOH . C 3 HOH A 35 4135 84 HOH HOH . C 3 HOH A 36 4136 83 HOH HOH . C 3 HOH A 37 4137 33 HOH HOH . C 3 HOH A 38 4138 91 HOH HOH . C 3 HOH A 39 4139 45 HOH HOH . C 3 HOH A 40 4140 51 HOH HOH . C 3 HOH A 41 4141 31 HOH HOH . C 3 HOH A 42 4142 11 HOH HOH . C 3 HOH A 43 4143 60 HOH HOH . C 3 HOH A 44 4144 57 HOH HOH . C 3 HOH A 45 4145 52 HOH HOH . C 3 HOH A 46 4146 13 HOH HOH . C 3 HOH A 47 4147 86 HOH HOH . C 3 HOH A 48 4148 50 HOH HOH . C 3 HOH A 49 4149 6 HOH HOH . C 3 HOH A 50 4150 93 HOH HOH . C 3 HOH A 51 4151 8 HOH HOH . C 3 HOH A 52 4152 47 HOH HOH . C 3 HOH A 53 4153 24 HOH HOH . C 3 HOH A 54 4154 96 HOH HOH . C 3 HOH A 55 4155 12 HOH HOH . C 3 HOH A 56 4156 26 HOH HOH . C 3 HOH A 57 4157 39 HOH HOH . C 3 HOH A 58 4158 85 HOH HOH . C 3 HOH A 59 4159 63 HOH HOH . C 3 HOH A 60 4160 9 HOH HOH . C 3 HOH A 61 4161 4 HOH HOH . C 3 HOH A 62 4162 67 HOH HOH . C 3 HOH A 63 4163 56 HOH HOH . C 3 HOH A 64 4164 17 HOH HOH . C 3 HOH A 65 4165 29 HOH HOH . C 3 HOH A 66 4166 74 HOH HOH . C 3 HOH A 67 4167 55 HOH HOH . C 3 HOH A 68 4168 43 HOH HOH . C 3 HOH A 69 4169 15 HOH HOH . C 3 HOH A 70 4170 30 HOH HOH . C 3 HOH A 71 4171 36 HOH HOH . C 3 HOH A 72 4172 41 HOH HOH . C 3 HOH A 73 4173 54 HOH HOH . C 3 HOH A 74 4174 25 HOH HOH . C 3 HOH A 75 4175 94 HOH HOH . C 3 HOH A 76 4176 27 HOH HOH . C 3 HOH A 77 4177 35 HOH HOH . C 3 HOH A 78 4178 7 HOH HOH . C 3 HOH A 79 4179 59 HOH HOH . C 3 HOH A 80 4180 97 HOH HOH . C 3 HOH A 81 4181 5 HOH HOH . C 3 HOH A 82 4182 32 HOH HOH . C 3 HOH A 83 4183 16 HOH HOH . C 3 HOH A 84 4184 62 HOH HOH . C 3 HOH A 85 4185 3 HOH HOH . C 3 HOH A 86 4186 34 HOH HOH . C 3 HOH A 87 4187 48 HOH HOH . C 3 HOH A 88 4188 66 HOH HOH . C 3 HOH A 89 4189 61 HOH HOH . C 3 HOH A 90 4190 46 HOH HOH . C 3 HOH A 91 4191 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 G4J . . . B 2 14.729 16.647 -12.131 1 33.11 ? N3 G4J 4000 A 1 HETATM 2 C C4 G4J . . . B 2 16.496 17.787 -13.453 1 35.52 ? C4 G4J 4000 A 1 HETATM 3 N N2 G4J . . . B 2 16.794 18.03 -14.755 1 35.41 ? N2 G4J 4000 A 1 HETATM 4 C C7 G4J . . . B 2 11.236 14.564 -11.608 1 43.4 ? C7 G4J 4000 A 1 HETATM 5 C C6 G4J . . . B 2 12.067 14.916 -10.548 1 43.28 ? C6 G4J 4000 A 1 HETATM 6 C C9 G4J . . . B 2 11.401 15.052 -15.371 1 44.38 ? C9 G4J 4000 A 1 HETATM 7 C C13 G4J . . . B 2 9.344 13.057 -15.149 1 45.96 ? C13 G4J 4000 A 1 HETATM 8 C C8 G4J . . . B 2 11.657 14.954 -12.899 1 44.1 ? C8 G4J 4000 A 1 HETATM 9 N N5 G4J . . . B 2 12.792 15.704 -13.105 1 41.6 ? N5 G4J 4000 A 1 HETATM 10 C C18 G4J . . . B 2 6.228 14.352 -17.948 1 53.71 ? C18 G4J 4000 A 1 HETATM 11 C C16 G4J . . . B 2 7.283 13.457 -17.283 1 53.95 ? C16 G4J 4000 A 1 HETATM 12 C C1 G4J . . . B 2 15.765 17.542 -16.939 1 33.16 ? C1 G4J 4000 A 1 HETATM 13 N N1 G4J . . . B 2 15.775 17.479 -15.472 1 33.36 ? N1 G4J 4000 A 1 HETATM 14 C C2 G4J . . . B 2 14.807 16.871 -14.663 1 26.96 ? C2 G4J 4000 A 1 HETATM 15 C C3 G4J . . . B 2 15.258 17.055 -13.356 1 30.95 ? C3 G4J 4000 A 1 HETATM 16 C C5 G4J . . . B 2 13.539 15.96 -11.982 1 39.97 ? C5 G4J 4000 A 1 HETATM 17 N N4 G4J . . . B 2 13.222 15.598 -10.67 1 43.75 ? N4 G4J 4000 A 1 HETATM 18 N N6 G4J . . . B 2 10.996 14.532 -14.049 1 45.4 ? N6 G4J 4000 A 1 HETATM 19 C C10 G4J . . . B 2 10.994 14.037 -16.463 1 47.3 ? C10 G4J 4000 A 1 HETATM 20 C C11 G4J . . . B 2 11.532 12.626 -16.135 1 46.59 ? C11 G4J 4000 A 1 HETATM 21 C C12 G4J . . . B 2 10.447 11.98 -15.263 1 44.72 ? C12 G4J 4000 A 1 HETATM 22 C C14 G4J . . . B 2 9.634 13.977 -13.937 1 47.57 ? C14 G4J 4000 A 1 HETATM 23 N N7 G4J . . . B 2 9.521 13.901 -16.35 1 48.08 ? N7 G4J 4000 A 1 HETATM 24 C C15 G4J . . . B 2 8.707 13.847 -17.484 1 53.47 ? C15 G4J 4000 A 1 HETATM 25 O O1 G4J . . . B 2 9.122 14.224 -18.575 1 57.19 ? O1 G4J 4000 A 1 HETATM 26 C C17 G4J . . . B 2 6.518 12.978 -18.519 1 53.69 ? C17 G4J 4000 A 1 HETATM 27 F F1 G4J . . . B 2 6.561 15.465 -18.591 1 52.65 ? F1 G4J 4000 A 1 HETATM 28 F F2 G4J . . . B 2 5.095 14.624 -17.303 1 54.43 ? F2 G4J 4000 A 1 HETATM 29 H H9 G4J . . . B 2 15.253 16.894 -11.295 0 33.09 ? H9 G4J 4000 A 1 HETATM 30 H H8 G4J . . . B 2 17.141 18.122 -12.647 0 35.54 ? H8 G4J 4000 A 1 HETATM 31 H H11 G4J . . . B 2 10.32 13.998 -11.438 0 43.42 ? H11 G4J 4000 A 1 HETATM 32 H H10 G4J . . . B 2 11.816 14.626 -9.519 0 43.27 ? H10 G4J 4000 A 1 HETATM 33 H H13 G4J . . . B 2 10.943 16.051 -15.57 0 44.41 ? H13 G4J 4000 A 1 HETATM 34 H H12 G4J . . . B 2 12.506 15.222 -15.426 0 44.41 ? H12 G4J 4000 A 1 HETATM 35 H H2 G4J . . . B 2 8.314 12.624 -15.063 0 45.98 ? H2 G4J 4000 A 1 HETATM 36 H H3 G4J . . . B 2 7.042 12.999 -16.306 0 53.88 ? H3 G4J 4000 A 1 HETATM 37 H H4 G4J . . . B 2 15.824 18.587 -17.295 0 33.12 ? H4 G4J 4000 A 1 HETATM 38 H H5 G4J . . . B 2 14.838 17.098 -17.339 0 33.12 ? H5 G4J 4000 A 1 HETATM 39 H H6 G4J . . . B 2 16.623 16.995 -17.368 0 33.12 ? H6 G4J 4000 A 1 HETATM 40 H H7 G4J . . . B 2 13.921 16.379 -15.065 0 26.97 ? H7 G4J 4000 A 1 HETATM 41 H H1 G4J . . . B 2 11.331 14.404 -17.465 0 47.28 ? H1 G4J 4000 A 1 HETATM 42 H H15 G4J . . . B 2 12.518 12.663 -15.637 0 46.58 ? H15 G4J 4000 A 1 HETATM 43 H H14 G4J . . . B 2 11.705 12.045 -17.061 0 46.58 ? H14 G4J 4000 A 1 HETATM 44 H H17 G4J . . . B 2 10.831 11.666 -14.274 0 44.74 ? H17 G4J 4000 A 1 HETATM 45 H H16 G4J . . . B 2 10.053 11.05 -15.716 0 44.74 ? H16 G4J 4000 A 1 HETATM 46 H H19 G4J . . . B 2 9.525 13.394 -12.99 0 47.55 ? H19 G4J 4000 A 1 HETATM 47 H H18 G4J . . . B 2 8.868 14.785 -13.869 0 47.55 ? H18 G4J 4000 A 1 HETATM 48 H H20 G4J . . . B 2 7.039 12.888 -19.48 0 53.62 ? H20 G4J 4000 A 1 HETATM 49 H H21 G4J . . . B 2 5.785 12.17 -18.416 0 53.62 ? H21 G4J 4000 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 49 #