data_6DC5
#
_model_server_result.job_id            Di_MY4mBCuZ_YupH9vtYig 
_model_server_result.datetime_utc      '2024-12-26 11:18:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dc5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":302}' 
#
_entry.id    6DC5 
#
_exptl.entry_id    6DC5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DC5 
_cell.length_a            132.45 
_cell.length_b            152.18 
_cell.length_c            202.93 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DC5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,J,K,P,Q 1 1 
B,F,G,L,M,R,S 2 1 
C,H,I,N,O,T,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 P N N 
? 6 Q N N 
? 6 R N N 
? 6 S N N 
? 6 T N N 
? 6 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 37 A CYS 37 1_555 A SG CYS 439 A CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 69 A CYS 69 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 155 A CYS 155 1_555 A SG CYS 290 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 313 A CYS 313 1_555 A SG CYS 343 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 A SG CYS 322 A CYS 322 1_555 A SG CYS 333 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 A SG CYS 358 A CYS 358 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 A SG CYS 382 A CYS 382 1_555 A SG CYS 393 A CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 A SG CYS 416 A CYS 416 1_555 A SG CYS 422 A CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf9 B SG CYS 37 D CYS 37 1_555 B SG CYS 439 D CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 B SG CYS 69 D CYS 69 1_555 B SG CYS 212 D CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf11 B SG CYS 155 D CYS 155 1_555 B SG CYS 290 D CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 B SG CYS 313 D CYS 313 1_555 B SG CYS 343 D CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf13 B SG CYS 322 D CYS 322 1_555 B SG CYS 333 D CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 B SG CYS 358 D CYS 358 1_555 B SG CYS 367 D CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf15 B SG CYS 382 D CYS 382 1_555 B SG CYS 393 D CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf16 B SG CYS 416 D CYS 416 1_555 B SG CYS 422 D CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf17 C SG CYS 37 G CYS 37 1_555 C SG CYS 439 G CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf18 C SG CYS 69 G CYS 69 1_555 C SG CYS 212 G CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf19 C SG CYS 155 G CYS 155 1_555 C SG CYS 290 G CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf20 C SG CYS 313 G CYS 313 1_555 C SG CYS 343 G CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf21 C SG CYS 322 G CYS 322 1_555 C SG CYS 333 G CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf22 C SG CYS 358 G CYS 358 1_555 C SG CYS 367 G CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf23 C SG CYS 382 G CYS 382 1_555 C SG CYS 393 G CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf24 C SG CYS 416 G CYS 416 1_555 C SG CYS 422 G CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf25 D SG CYS 22 B CYS 22 1_555 D SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf26 D SG CYS 151 B CYS 140 1_555 D SG CYS 207 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf27 E SG CYS 23 C CYS 23 1_555 E SG CYS 89 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf28 E SG CYS 135 C CYS 134 1_555 E SG CYS 195 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf29 F SG CYS 22 E CYS 22 1_555 F SG CYS 96 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf30 F SG CYS 151 E CYS 140 1_555 F SG CYS 207 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf31 G SG CYS 23 F CYS 23 1_555 G SG CYS 89 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf32 G SG CYS 135 F CYS 134 1_555 G SG CYS 195 F CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf33 H SG CYS 22 H CYS 22 1_555 H SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf34 H SG CYS 151 H CYS 140 1_555 H SG CYS 207 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf35 H SG CYS 227 H CYS 216 1_555 I SG CYS 215 I CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf36 I SG CYS 23 I CYS 23 1_555 I SG CYS 89 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf37 I SG CYS 135 I CYS 134 1_555 I SG CYS 195 I CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 70 A ASN 70 1_555 J C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale2 B ND2 ASN 70 D ASN 70 1_555 L C1 NAG . D NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale3 C ND2 ASN 70 G ASN 70 1_555 N C1 NAG . G NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 265 n n 
C1 C2 PEG sing 266 n n 
C1 H11 PEG sing 267 n n 
C1 H12 PEG sing 268 n n 
O1 HO1 PEG sing 269 n n 
C2 O2 PEG sing 270 n n 
C2 H21 PEG sing 271 n n 
C2 H22 PEG sing 272 n n 
O2 C3 PEG sing 273 n n 
C3 C4 PEG sing 274 n n 
C3 H31 PEG sing 275 n n 
C3 H32 PEG sing 276 n n 
C4 O4 PEG sing 277 n n 
C4 H41 PEG sing 278 n n 
C4 H42 PEG sing 279 n n 
O4 HO4 PEG sing 280 n n 
#
_atom_sites.entry_id                     6DC5 
_atom_sites.fract_transf_matrix[1][1]    0.00755 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006571 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004928 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 NAG A 1 601 570 NAG NAG . 
K 5 CD A 1 602 2 CD CD . 
L 4 NAG D 1 601 570 NAG NAG . 
M 5 CD D 1 602 3 CD CD . 
N 4 NAG G 1 601 570 NAG NAG . 
O 5 CD G 1 602 1 CD CD . 
P 6 PEG C 1 301 3 PEG PEG . 
Q 6 PEG C 1 302 6 PEG PEG . 
R 6 PEG F 1 301 1 PEG PEG . 
S 6 PEG F 1 302 4 PEG PEG . 
T 6 PEG I 1 301 2 PEG PEG . 
U 6 PEG I 1 302 5 PEG PEG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . Q 6 -50.079 32.975 -52.98 1 31.52 ? C1 PEG 302 C 1 
HETATM 2 O O1 PEG . . . Q 6 -49.986 31.62 -52.63 1 28.86 ? O1 PEG 302 C 1 
HETATM 3 C C2 PEG . . . Q 6 -50.886 33.737 -51.928 1 34.95 ? C2 PEG 302 C 1 
HETATM 4 O O2 PEG . . . Q 6 -50.095 33.968 -50.795 1 38.35 ? O2 PEG 302 C 1 
HETATM 5 C C3 PEG . . . Q 6 -50.567 33.347 -49.629 1 39.4 ? C3 PEG 302 C 1 
HETATM 6 C C4 PEG . . . Q 6 -49.748 33.808 -48.421 1 39.17 ? C4 PEG 302 C 1 
HETATM 7 O O4 PEG . . . Q 6 -50.012 35.159 -48.153 1 37.91 ? O4 PEG 302 C 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    78 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#