data_6DCM # _model_server_result.job_id BhHYyyiOk8SqRmwOgLLZcA _model_server_result.datetime_utc '2025-02-05 17:06:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dcm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 6DCM # _exptl.entry_id 6DCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.173 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-AMINOHEXANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.36 _cell.angle_gamma 90 _cell.entry_id 6DCM _cell.length_a 30.825 _cell.length_b 39.006 _cell.length_c 31.316 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 1 1_555 A SG CYS 84 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 27 A CYS 22 1_555 A SG CYS 67 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 55 A CYS 50 1_555 A SG CYS 79 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C6 H13 N O2' _chem_comp.formula_weight 131.173 _chem_comp.id ACA _chem_comp.mon_nstd_flag . _chem_comp.name '6-AMINOHEXANOIC ACID' _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms 'AMINOCAPROIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACA doub 1 n n C OXT ACA sing 2 n n C C2 ACA sing 3 n n OXT HXT ACA sing 4 n n C2 C3 ACA sing 5 n n C2 H21 ACA sing 6 n n C2 H22 ACA sing 7 n n C3 C4 ACA sing 8 n n C3 H31 ACA sing 9 n n C3 H32 ACA sing 10 n n C4 C5 ACA sing 11 n n C4 H41 ACA sing 12 n n C4 H42 ACA sing 13 n n C5 C6 ACA sing 14 n n C5 H51 ACA sing 15 n n C5 H52 ACA sing 16 n n C6 N ACA sing 17 n n C6 H61 ACA sing 18 n n C6 H62 ACA sing 19 n n N H ACA sing 20 n n N H2 ACA sing 21 n n # _atom_sites.entry_id 6DCM _atom_sites.fract_transf_matrix[1][1] 0.032441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.012037 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACA A 1 101 90 ACA ACA . C 3 HOH A 1 201 45 HOH HOH . C 3 HOH A 2 202 57 HOH HOH . C 3 HOH A 3 203 77 HOH HOH . C 3 HOH A 4 204 76 HOH HOH . C 3 HOH A 5 205 48 HOH HOH . C 3 HOH A 6 206 103 HOH HOH . C 3 HOH A 7 207 64 HOH HOH . C 3 HOH A 8 208 1 HOH HOH . C 3 HOH A 9 209 16 HOH HOH . C 3 HOH A 10 210 65 HOH HOH . C 3 HOH A 11 211 4 HOH HOH . C 3 HOH A 12 212 25 HOH HOH . C 3 HOH A 13 213 34 HOH HOH . C 3 HOH A 14 214 88 HOH HOH . C 3 HOH A 15 215 58 HOH HOH . C 3 HOH A 16 216 47 HOH HOH . C 3 HOH A 17 217 3 HOH HOH . C 3 HOH A 18 218 46 HOH HOH . C 3 HOH A 19 219 14 HOH HOH . C 3 HOH A 20 220 39 HOH HOH . C 3 HOH A 21 221 2 HOH HOH . C 3 HOH A 22 222 40 HOH HOH . C 3 HOH A 23 223 10 HOH HOH . C 3 HOH A 24 224 74 HOH HOH . C 3 HOH A 25 225 86 HOH HOH . C 3 HOH A 26 226 27 HOH HOH . C 3 HOH A 27 227 95 HOH HOH . C 3 HOH A 28 228 33 HOH HOH . C 3 HOH A 29 229 90 HOH HOH . C 3 HOH A 30 230 42 HOH HOH . C 3 HOH A 31 231 9 HOH HOH . C 3 HOH A 32 232 59 HOH HOH . C 3 HOH A 33 233 15 HOH HOH . C 3 HOH A 34 234 43 HOH HOH . C 3 HOH A 35 235 85 HOH HOH . C 3 HOH A 36 236 12 HOH HOH . C 3 HOH A 37 237 7 HOH HOH . C 3 HOH A 38 238 19 HOH HOH . C 3 HOH A 39 239 26 HOH HOH . C 3 HOH A 40 240 53 HOH HOH . C 3 HOH A 41 241 44 HOH HOH . C 3 HOH A 42 242 24 HOH HOH . C 3 HOH A 43 243 8 HOH HOH . C 3 HOH A 44 244 30 HOH HOH . C 3 HOH A 45 245 73 HOH HOH . C 3 HOH A 46 246 6 HOH HOH . C 3 HOH A 47 247 60 HOH HOH . C 3 HOH A 48 248 99 HOH HOH . C 3 HOH A 49 249 69 HOH HOH . C 3 HOH A 50 250 97 HOH HOH . C 3 HOH A 51 251 62 HOH HOH . C 3 HOH A 52 252 32 HOH HOH . C 3 HOH A 53 253 51 HOH HOH . C 3 HOH A 54 254 49 HOH HOH . C 3 HOH A 55 255 11 HOH HOH . C 3 HOH A 56 256 105 HOH HOH . C 3 HOH A 57 257 50 HOH HOH . C 3 HOH A 58 258 28 HOH HOH . C 3 HOH A 59 259 21 HOH HOH . C 3 HOH A 60 260 18 HOH HOH . C 3 HOH A 61 261 66 HOH HOH . C 3 HOH A 62 262 36 HOH HOH . C 3 HOH A 63 263 13 HOH HOH . C 3 HOH A 64 264 94 HOH HOH . C 3 HOH A 65 265 38 HOH HOH . C 3 HOH A 66 266 17 HOH HOH . C 3 HOH A 67 267 71 HOH HOH . C 3 HOH A 68 268 63 HOH HOH . C 3 HOH A 69 269 23 HOH HOH . C 3 HOH A 70 270 54 HOH HOH . C 3 HOH A 71 271 92 HOH HOH . C 3 HOH A 72 272 41 HOH HOH . C 3 HOH A 73 273 31 HOH HOH . C 3 HOH A 74 274 102 HOH HOH . C 3 HOH A 75 275 104 HOH HOH . C 3 HOH A 76 276 5 HOH HOH . C 3 HOH A 77 277 70 HOH HOH . C 3 HOH A 78 278 29 HOH HOH . C 3 HOH A 79 279 87 HOH HOH . C 3 HOH A 80 280 67 HOH HOH . C 3 HOH A 81 281 98 HOH HOH . C 3 HOH A 82 282 84 HOH HOH . C 3 HOH A 83 283 52 HOH HOH . C 3 HOH A 84 284 68 HOH HOH . C 3 HOH A 85 285 79 HOH HOH . C 3 HOH A 86 286 91 HOH HOH . C 3 HOH A 87 287 75 HOH HOH . C 3 HOH A 88 288 20 HOH HOH . C 3 HOH A 89 289 78 HOH HOH . C 3 HOH A 90 290 72 HOH HOH . C 3 HOH A 91 291 61 HOH HOH . C 3 HOH A 92 292 82 HOH HOH . C 3 HOH A 93 293 114 HOH HOH . C 3 HOH A 94 294 93 HOH HOH . C 3 HOH A 95 295 101 HOH HOH . C 3 HOH A 96 296 100 HOH HOH . C 3 HOH A 97 297 96 HOH HOH . C 3 HOH A 98 298 56 HOH HOH . C 3 HOH A 99 299 55 HOH HOH . C 3 HOH A 100 300 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACA . . . B 2 1.006 -7.135 1.36 1 12.86 ? C ACA 101 A 1 HETATM 2 O O ACA . . . B 2 1.751 -6.309 0.774 1 15.84 ? O ACA 101 A 1 HETATM 3 O OXT ACA . . . B 2 1.218 -7.421 2.565 1 15.97 ? OXT ACA 101 A 1 HETATM 4 C C2 ACA . . . B 2 -0.149 -7.791 0.604 1 17.65 ? C2 ACA 101 A 1 HETATM 5 C C3 ACA . . . B 2 -1.403 -7.78 1.475 1 12.67 ? C3 ACA 101 A 1 HETATM 6 C C4 ACA . . . B 2 -2.603 -8.335 0.704 1 14.34 ? C4 ACA 101 A 1 HETATM 7 C C5 ACA . . . B 2 -3.786 -8.372 1.662 1 13.91 ? C5 ACA 101 A 1 HETATM 8 C C6 ACA . . . B 2 -5.11 -8.686 0.966 1 11.16 ? C6 ACA 101 A 1 HETATM 9 N N ACA . . . B 2 -5.068 -9.953 0.249 1 9.67 ? N ACA 101 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #