data_6DCY # _model_server_result.job_id 7PTEtCygItKg5llQbo0GzQ _model_server_result.datetime_utc '2024-11-22 15:00:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6DCY # _exptl.entry_id 6DCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-hydroxy-2-methyl-4-oxo-4H-pyran-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6DCY _cell.length_a 75.54 _cell.length_b 75.54 _cell.length_c 120.36 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc2 A OE2 GLU 74 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc7 B MN MN . A MN 301 1_555 D OAH G5V . A G5V 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc8 B MN MN . A MN 301 1_555 D OAD G5V . A G5V 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc9 C MN MN . A MN 302 1_555 D OAK G5V . A G5V 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc10 C MN MN . A MN 302 1_555 D OAL G5V . A G5V 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc11 C MN MN . A MN 302 1_555 D OAH G5V . A G5V 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc12 C MN MN . A MN 302 1_555 E O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc13 C MN MN . A MN 302 1_555 E O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? # _chem_comp.formula 'C7 H6 O5' _chem_comp.formula_weight 170.12 _chem_comp.id G5V _chem_comp.mon_nstd_flag . _chem_comp.name '5-hydroxy-2-methyl-4-oxo-4H-pyran-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAD CAC G5V sing 83 n n OAH CAG G5V doub 84 n n CAC CAG G5V sing 85 n n CAC CAB G5V doub 86 n n CAG CAF G5V sing 87 n n CAB OAA G5V sing 88 n n CAF CAJ G5V sing 89 n n CAF CAE G5V doub 90 n n OAK CAJ G5V doub 91 n n CAJ OAL G5V sing 92 n n OAA CAE G5V sing 93 n n CAE CAI G5V sing 94 n n OAL H1 G5V sing 95 n n OAD H2 G5V sing 96 n n CAB H3 G5V sing 97 n n CAI H4 G5V sing 98 n n CAI H5 G5V sing 99 n n CAI H6 G5V sing 100 n n # _atom_sites.entry_id 6DCY _atom_sites.fract_transf_matrix[1][1] 0.013238 _atom_sites.fract_transf_matrix[1][2] 0.007643 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 3 G5V A 1 303 501 G5V DRG . E 4 HOH A 1 401 404 HOH HOH . E 4 HOH A 2 402 406 HOH HOH . E 4 HOH A 3 403 401 HOH HOH . E 4 HOH A 4 404 402 HOH HOH . E 4 HOH A 5 405 410 HOH HOH . E 4 HOH A 6 406 408 HOH HOH . E 4 HOH A 7 407 407 HOH HOH . E 4 HOH A 8 408 403 HOH HOH . E 4 HOH A 9 409 405 HOH HOH . E 4 HOH A 10 410 409 HOH HOH . E 4 HOH A 11 411 411 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAK G5V . . . D 3 -16.765 17.11 135.147 1 67.96 ? OAK G5V 303 A 1 HETATM 2 C CAJ G5V . . . D 3 -17.853 16.528 135.326 1 47.41 ? CAJ G5V 303 A 1 HETATM 3 O OAL G5V . . . D 3 -17.723 15.369 135.615 1 45.99 ? OAL G5V 303 A 1 HETATM 4 C CAF G5V . . . D 3 -19.067 17.238 135.136 1 48.56 ? CAF G5V 303 A 1 HETATM 5 C CAG G5V . . . D 3 -19.611 17.388 133.865 1 40.4 ? CAG G5V 303 A 1 HETATM 6 O OAH G5V . . . D 3 -19.028 16.9 132.913 1 37.05 ? OAH G5V 303 A 1 HETATM 7 C CAC G5V . . . D 3 -20.822 18.096 133.671 1 42.03 ? CAC G5V 303 A 1 HETATM 8 O OAD G5V . . . D 3 -21.347 18.234 132.395 1 39.58 ? OAD G5V 303 A 1 HETATM 9 C CAB G5V . . . D 3 -21.452 18.632 134.756 1 47.28 ? CAB G5V 303 A 1 HETATM 10 O OAA G5V . . . D 3 -20.92 18.485 136.008 1 49.91 ? OAA G5V 303 A 1 HETATM 11 C CAE G5V . . . D 3 -19.757 17.808 136.206 1 47.72 ? CAE G5V 303 A 1 HETATM 12 C CAI G5V . . . D 3 -19.331 17.73 137.482 1 53.02 ? CAI G5V 303 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 446 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #