data_6DDB # _model_server_result.job_id xMwaz3p9Cffx8VSOB39i3A _model_server_result.datetime_utc '2024-11-16 10:53:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ddb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":603}' # _entry.id 6DDB # _exptl.entry_id 6DDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.5 _cell.angle_gamma 90 _cell.entry_id 6DDB _cell.length_a 143.126 _cell.length_b 123.123 _cell.length_c 90.314 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 104.244821 0 81.516087 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 70 A ASN 52 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 A O ASP 72 A ASP 54 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc3 A OD1 ASP 369 A ASP 351 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc4 C MN MN . A MN 601 1_555 D O1 PO4 . A PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc5 C MN MN . A MN 601 1_555 I O HOH . A HOH 777 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc6 B OD1 ASN 70 B ASN 52 1_555 F MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 B O ASP 72 B ASP 54 1_555 F MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 B OD1 ASP 369 B ASP 351 1_555 F MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc9 F MN MN . B MN 601 1_555 G O4 PO4 . B PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 6DDB _atom_sites.fract_transf_matrix[1][1] 0.006987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003333 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 601 601 MN MN . D 3 PO4 A 1 602 602 PO4 PO4 . E 3 PO4 A 1 603 603 PO4 PO4 . F 2 MN B 1 601 601 MN MN . G 3 PO4 B 1 602 602 PO4 PO4 . H 3 PO4 B 1 603 603 PO4 PO4 . I 4 HOH A 1 701 74 HOH HOH . I 4 HOH A 2 702 55 HOH HOH . I 4 HOH A 3 703 103 HOH HOH . I 4 HOH A 4 704 24 HOH HOH . I 4 HOH A 5 705 40 HOH HOH . I 4 HOH A 6 706 62 HOH HOH . I 4 HOH A 7 707 91 HOH HOH . I 4 HOH A 8 708 20 HOH HOH . I 4 HOH A 9 709 41 HOH HOH . I 4 HOH A 10 710 95 HOH HOH . I 4 HOH A 11 711 78 HOH HOH . I 4 HOH A 12 712 80 HOH HOH . I 4 HOH A 13 713 160 HOH HOH . I 4 HOH A 14 714 69 HOH HOH . I 4 HOH A 15 715 87 HOH HOH . I 4 HOH A 16 716 85 HOH HOH . I 4 HOH A 17 717 51 HOH HOH . I 4 HOH A 18 718 79 HOH HOH . I 4 HOH A 19 719 17 HOH HOH . I 4 HOH A 20 720 145 HOH HOH . I 4 HOH A 21 721 156 HOH HOH . I 4 HOH A 22 722 151 HOH HOH . I 4 HOH A 23 723 165 HOH HOH . I 4 HOH A 24 724 152 HOH HOH . I 4 HOH A 25 725 8 HOH HOH . I 4 HOH A 26 726 5 HOH HOH . I 4 HOH A 27 727 76 HOH HOH . I 4 HOH A 28 728 72 HOH HOH . I 4 HOH A 29 729 158 HOH HOH . I 4 HOH A 30 730 99 HOH HOH . I 4 HOH A 31 731 63 HOH HOH . I 4 HOH A 32 732 127 HOH HOH . I 4 HOH A 33 733 57 HOH HOH . I 4 HOH A 34 734 56 HOH HOH . I 4 HOH A 35 735 19 HOH HOH . I 4 HOH A 36 736 102 HOH HOH . I 4 HOH A 37 737 28 HOH HOH . I 4 HOH A 38 738 168 HOH HOH . I 4 HOH A 39 739 93 HOH HOH . I 4 HOH A 40 740 109 HOH HOH . I 4 HOH A 41 741 98 HOH HOH . I 4 HOH A 42 742 14 HOH HOH . I 4 HOH A 43 743 54 HOH HOH . I 4 HOH A 44 744 167 HOH HOH . I 4 HOH A 45 745 118 HOH HOH . I 4 HOH A 46 746 11 HOH HOH . I 4 HOH A 47 747 71 HOH HOH . I 4 HOH A 48 748 21 HOH HOH . I 4 HOH A 49 749 116 HOH HOH . I 4 HOH A 50 750 139 HOH HOH . I 4 HOH A 51 751 125 HOH HOH . I 4 HOH A 52 752 83 HOH HOH . I 4 HOH A 53 753 131 HOH HOH . I 4 HOH A 54 754 46 HOH HOH . I 4 HOH A 55 755 12 HOH HOH . I 4 HOH A 56 756 2 HOH HOH . I 4 HOH A 57 757 38 HOH HOH . I 4 HOH A 58 758 135 HOH HOH . I 4 HOH A 59 759 68 HOH HOH . I 4 HOH A 60 760 115 HOH HOH . I 4 HOH A 61 761 96 HOH HOH . I 4 HOH A 62 762 48 HOH HOH . I 4 HOH A 63 763 121 HOH HOH . I 4 HOH A 64 764 67 HOH HOH . I 4 HOH A 65 765 106 HOH HOH . I 4 HOH A 66 766 65 HOH HOH . I 4 HOH A 67 767 13 HOH HOH . I 4 HOH A 68 768 9 HOH HOH . I 4 HOH A 69 769 32 HOH HOH . I 4 HOH A 70 770 126 HOH HOH . I 4 HOH A 71 771 82 HOH HOH . I 4 HOH A 72 772 142 HOH HOH . I 4 HOH A 73 773 140 HOH HOH . I 4 HOH A 74 774 66 HOH HOH . I 4 HOH A 75 775 43 HOH HOH . I 4 HOH A 76 776 61 HOH HOH . I 4 HOH A 77 777 64 HOH HOH . I 4 HOH A 78 778 155 HOH HOH . I 4 HOH A 79 779 31 HOH HOH . I 4 HOH A 80 780 108 HOH HOH . I 4 HOH A 81 781 133 HOH HOH . I 4 HOH A 82 782 130 HOH HOH . I 4 HOH A 83 783 110 HOH HOH . I 4 HOH A 84 784 119 HOH HOH . I 4 HOH A 85 785 107 HOH HOH . I 4 HOH A 86 786 114 HOH HOH . I 4 HOH A 87 787 112 HOH HOH . I 4 HOH A 88 788 105 HOH HOH . I 4 HOH A 89 789 146 HOH HOH . J 4 HOH B 1 701 122 HOH HOH . J 4 HOH B 2 702 42 HOH HOH . J 4 HOH B 3 703 153 HOH HOH . J 4 HOH B 4 704 36 HOH HOH . J 4 HOH B 5 705 47 HOH HOH . J 4 HOH B 6 706 50 HOH HOH . J 4 HOH B 7 707 39 HOH HOH . J 4 HOH B 8 708 29 HOH HOH . J 4 HOH B 9 709 27 HOH HOH . J 4 HOH B 10 710 10 HOH HOH . J 4 HOH B 11 711 7 HOH HOH . J 4 HOH B 12 712 23 HOH HOH . J 4 HOH B 13 713 58 HOH HOH . J 4 HOH B 14 714 44 HOH HOH . J 4 HOH B 15 715 128 HOH HOH . J 4 HOH B 16 716 124 HOH HOH . J 4 HOH B 17 717 94 HOH HOH . J 4 HOH B 18 718 150 HOH HOH . J 4 HOH B 19 719 18 HOH HOH . J 4 HOH B 20 720 86 HOH HOH . J 4 HOH B 21 721 60 HOH HOH . J 4 HOH B 22 722 6 HOH HOH . J 4 HOH B 23 723 81 HOH HOH . J 4 HOH B 24 724 22 HOH HOH . J 4 HOH B 25 725 134 HOH HOH . J 4 HOH B 26 726 111 HOH HOH . J 4 HOH B 27 727 166 HOH HOH . J 4 HOH B 28 728 129 HOH HOH . J 4 HOH B 29 729 143 HOH HOH . J 4 HOH B 30 730 92 HOH HOH . J 4 HOH B 31 731 1 HOH HOH . J 4 HOH B 32 732 59 HOH HOH . J 4 HOH B 33 733 148 HOH HOH . J 4 HOH B 34 734 149 HOH HOH . J 4 HOH B 35 735 35 HOH HOH . J 4 HOH B 36 736 90 HOH HOH . J 4 HOH B 37 737 164 HOH HOH . J 4 HOH B 38 738 97 HOH HOH . J 4 HOH B 39 739 123 HOH HOH . J 4 HOH B 40 740 84 HOH HOH . J 4 HOH B 41 741 3 HOH HOH . J 4 HOH B 42 742 53 HOH HOH . J 4 HOH B 43 743 163 HOH HOH . J 4 HOH B 44 744 75 HOH HOH . J 4 HOH B 45 745 52 HOH HOH . J 4 HOH B 46 746 157 HOH HOH . J 4 HOH B 47 747 73 HOH HOH . J 4 HOH B 48 748 101 HOH HOH . J 4 HOH B 49 749 16 HOH HOH . J 4 HOH B 50 750 15 HOH HOH . J 4 HOH B 51 751 25 HOH HOH . J 4 HOH B 52 752 144 HOH HOH . J 4 HOH B 53 753 138 HOH HOH . J 4 HOH B 54 754 49 HOH HOH . J 4 HOH B 55 755 147 HOH HOH . J 4 HOH B 56 756 169 HOH HOH . J 4 HOH B 57 757 104 HOH HOH . J 4 HOH B 58 758 37 HOH HOH . J 4 HOH B 59 759 33 HOH HOH . J 4 HOH B 60 760 34 HOH HOH . J 4 HOH B 61 761 136 HOH HOH . J 4 HOH B 62 762 30 HOH HOH . J 4 HOH B 63 763 88 HOH HOH . J 4 HOH B 64 764 45 HOH HOH . J 4 HOH B 65 765 132 HOH HOH . J 4 HOH B 66 766 159 HOH HOH . J 4 HOH B 67 767 70 HOH HOH . J 4 HOH B 68 768 141 HOH HOH . J 4 HOH B 69 769 26 HOH HOH . J 4 HOH B 70 770 120 HOH HOH . J 4 HOH B 71 771 161 HOH HOH . J 4 HOH B 72 772 77 HOH HOH . J 4 HOH B 73 773 154 HOH HOH . J 4 HOH B 74 774 113 HOH HOH . J 4 HOH B 75 775 4 HOH HOH . J 4 HOH B 76 776 89 HOH HOH . J 4 HOH B 77 777 117 HOH HOH . J 4 HOH B 78 778 100 HOH HOH . J 4 HOH B 79 779 162 HOH HOH . J 4 HOH B 80 780 171 HOH HOH . J 4 HOH B 81 781 172 HOH HOH . J 4 HOH B 82 782 137 HOH HOH . J 4 HOH B 83 783 173 HOH HOH . J 4 HOH B 84 784 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . H 3 25.869 10.932 5.993 1 60.91 ? P PO4 603 B 1 HETATM 2 O O1 PO4 . . . H 3 25.718 11.906 4.845 1 56.78 ? O1 PO4 603 B 1 HETATM 3 O O2 PO4 . . . H 3 24.935 9.753 5.797 1 54.58 ? O2 PO4 603 B 1 HETATM 4 O O3 PO4 . . . H 3 25.517 11.636 7.288 1 64.77 ? O3 PO4 603 B 1 HETATM 5 O O4 PO4 . . . H 3 27.306 10.464 6.038 1 48.68 ? O4 PO4 603 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #