data_6DDC # _model_server_result.job_id PEs_n4xeOB_c8aPHyAmGHg _model_server_result.datetime_utc '2024-12-05 03:46:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ddc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":603}' # _entry.id 6DDC # _exptl.entry_id 6DDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.25 _cell.angle_gamma 90 _cell.entry_id 6DDC _cell.length_a 144.555 _cell.length_b 124.151 _cell.length_c 90.736 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 104.423493 0 81.378645 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 72 A ASP 54 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc2 A OD1 ASP 369 A ASP 351 1_555 C MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc3 C MG MG . A MG 601 1_555 D O1 PO4 . A PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 B O ASP 72 B ASP 54 1_555 F MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc5 B OD1 ASP 369 B ASP 351 1_555 F MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc6 F MG MG . B MG 601 1_555 G O1 PO4 . B PO4 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 6DDC _atom_sites.fract_transf_matrix[1][1] 0.006918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003412 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 601 601 MG MG . D 3 PO4 A 1 602 602 PO4 PO4 . E 3 PO4 A 1 603 603 PO4 PO4 . F 2 MG B 1 601 601 MG MG . G 3 PO4 B 1 602 602 PO4 PO4 . H 3 PO4 B 1 603 603 PO4 PO4 . I 4 HOH A 1 701 35 HOH HOH . I 4 HOH A 2 702 134 HOH HOH . I 4 HOH A 3 703 48 HOH HOH . I 4 HOH A 4 704 92 HOH HOH . I 4 HOH A 5 705 201 HOH HOH . I 4 HOH A 6 706 47 HOH HOH . I 4 HOH A 7 707 9 HOH HOH . I 4 HOH A 8 708 38 HOH HOH . I 4 HOH A 9 709 18 HOH HOH . I 4 HOH A 10 710 162 HOH HOH . I 4 HOH A 11 711 165 HOH HOH . I 4 HOH A 12 712 258 HOH HOH . I 4 HOH A 13 713 111 HOH HOH . I 4 HOH A 14 714 31 HOH HOH . I 4 HOH A 15 715 84 HOH HOH . I 4 HOH A 16 716 15 HOH HOH . I 4 HOH A 17 717 53 HOH HOH . I 4 HOH A 18 718 34 HOH HOH . I 4 HOH A 19 719 49 HOH HOH . I 4 HOH A 20 720 123 HOH HOH . I 4 HOH A 21 721 27 HOH HOH . I 4 HOH A 22 722 58 HOH HOH . I 4 HOH A 23 723 42 HOH HOH . I 4 HOH A 24 724 72 HOH HOH . I 4 HOH A 25 725 57 HOH HOH . I 4 HOH A 26 726 29 HOH HOH . I 4 HOH A 27 727 202 HOH HOH . I 4 HOH A 28 728 32 HOH HOH . I 4 HOH A 29 729 79 HOH HOH . I 4 HOH A 30 730 28 HOH HOH . I 4 HOH A 31 731 13 HOH HOH . I 4 HOH A 32 732 80 HOH HOH . I 4 HOH A 33 733 94 HOH HOH . I 4 HOH A 34 734 75 HOH HOH . I 4 HOH A 35 735 147 HOH HOH . I 4 HOH A 36 736 89 HOH HOH . I 4 HOH A 37 737 161 HOH HOH . I 4 HOH A 38 738 20 HOH HOH . I 4 HOH A 39 739 122 HOH HOH . I 4 HOH A 40 740 21 HOH HOH . I 4 HOH A 41 741 33 HOH HOH . I 4 HOH A 42 742 152 HOH HOH . I 4 HOH A 43 743 23 HOH HOH . I 4 HOH A 44 744 61 HOH HOH . I 4 HOH A 45 745 55 HOH HOH . I 4 HOH A 46 746 65 HOH HOH . I 4 HOH A 47 747 30 HOH HOH . I 4 HOH A 48 748 206 HOH HOH . I 4 HOH A 49 749 63 HOH HOH . I 4 HOH A 50 750 88 HOH HOH . I 4 HOH A 51 751 103 HOH HOH . I 4 HOH A 52 752 257 HOH HOH . I 4 HOH A 53 753 194 HOH HOH . I 4 HOH A 54 754 51 HOH HOH . I 4 HOH A 55 755 144 HOH HOH . I 4 HOH A 56 756 131 HOH HOH . I 4 HOH A 57 757 116 HOH HOH . I 4 HOH A 58 758 52 HOH HOH . I 4 HOH A 59 759 119 HOH HOH . I 4 HOH A 60 760 46 HOH HOH . I 4 HOH A 61 761 19 HOH HOH . I 4 HOH A 62 762 211 HOH HOH . I 4 HOH A 63 763 180 HOH HOH . I 4 HOH A 64 764 158 HOH HOH . I 4 HOH A 65 765 264 HOH HOH . I 4 HOH A 66 766 16 HOH HOH . I 4 HOH A 67 767 171 HOH HOH . I 4 HOH A 68 768 77 HOH HOH . I 4 HOH A 69 769 5 HOH HOH . I 4 HOH A 70 770 68 HOH HOH . I 4 HOH A 71 771 209 HOH HOH . I 4 HOH A 72 772 59 HOH HOH . I 4 HOH A 73 773 39 HOH HOH . I 4 HOH A 74 774 3 HOH HOH . I 4 HOH A 75 775 265 HOH HOH . I 4 HOH A 76 776 174 HOH HOH . I 4 HOH A 77 777 82 HOH HOH . I 4 HOH A 78 778 155 HOH HOH . I 4 HOH A 79 779 114 HOH HOH . I 4 HOH A 80 780 166 HOH HOH . I 4 HOH A 81 781 169 HOH HOH . I 4 HOH A 82 782 85 HOH HOH . I 4 HOH A 83 783 205 HOH HOH . I 4 HOH A 84 784 6 HOH HOH . I 4 HOH A 85 785 190 HOH HOH . I 4 HOH A 86 786 193 HOH HOH . I 4 HOH A 87 787 178 HOH HOH . I 4 HOH A 88 788 102 HOH HOH . I 4 HOH A 89 789 163 HOH HOH . I 4 HOH A 90 790 132 HOH HOH . I 4 HOH A 91 791 173 HOH HOH . I 4 HOH A 92 792 69 HOH HOH . I 4 HOH A 93 793 262 HOH HOH . I 4 HOH A 94 794 156 HOH HOH . I 4 HOH A 95 795 159 HOH HOH . I 4 HOH A 96 796 70 HOH HOH . I 4 HOH A 97 797 260 HOH HOH . I 4 HOH A 98 798 74 HOH HOH . I 4 HOH A 99 799 151 HOH HOH . I 4 HOH A 100 800 106 HOH HOH . I 4 HOH A 101 801 183 HOH HOH . I 4 HOH A 102 802 78 HOH HOH . I 4 HOH A 103 803 179 HOH HOH . I 4 HOH A 104 804 204 HOH HOH . I 4 HOH A 105 805 145 HOH HOH . I 4 HOH A 106 806 97 HOH HOH . I 4 HOH A 107 807 192 HOH HOH . I 4 HOH A 108 808 255 HOH HOH . I 4 HOH A 109 809 76 HOH HOH . I 4 HOH A 110 810 129 HOH HOH . I 4 HOH A 111 811 100 HOH HOH . I 4 HOH A 112 812 181 HOH HOH . I 4 HOH A 113 813 212 HOH HOH . I 4 HOH A 114 814 191 HOH HOH . I 4 HOH A 115 815 203 HOH HOH . I 4 HOH A 116 816 142 HOH HOH . I 4 HOH A 117 817 167 HOH HOH . I 4 HOH A 118 818 17 HOH HOH . I 4 HOH A 119 819 195 HOH HOH . I 4 HOH A 120 820 157 HOH HOH . I 4 HOH A 121 821 164 HOH HOH . I 4 HOH A 122 822 187 HOH HOH . I 4 HOH A 123 823 197 HOH HOH . I 4 HOH A 124 824 170 HOH HOH . I 4 HOH A 125 825 256 HOH HOH . I 4 HOH A 126 826 150 HOH HOH . I 4 HOH A 127 827 254 HOH HOH . I 4 HOH A 128 828 182 HOH HOH . I 4 HOH A 129 829 184 HOH HOH . I 4 HOH A 130 830 207 HOH HOH . I 4 HOH A 131 831 188 HOH HOH . I 4 HOH A 132 832 143 HOH HOH . I 4 HOH A 133 833 186 HOH HOH . I 4 HOH A 134 834 189 HOH HOH . I 4 HOH A 135 835 146 HOH HOH . I 4 HOH A 136 836 160 HOH HOH . I 4 HOH A 137 837 124 HOH HOH . I 4 HOH A 138 838 196 HOH HOH . I 4 HOH A 139 839 185 HOH HOH . I 4 HOH A 140 840 259 HOH HOH . I 4 HOH A 141 841 261 HOH HOH . I 4 HOH A 142 842 263 HOH HOH . I 4 HOH A 143 843 176 HOH HOH . I 4 HOH A 144 844 172 HOH HOH . I 4 HOH A 145 845 175 HOH HOH . I 4 HOH A 146 846 22 HOH HOH . I 4 HOH A 147 847 198 HOH HOH . I 4 HOH A 148 848 177 HOH HOH . I 4 HOH A 149 849 154 HOH HOH . I 4 HOH A 150 850 139 HOH HOH . I 4 HOH A 151 851 148 HOH HOH . I 4 HOH A 152 852 153 HOH HOH . J 4 HOH B 1 701 91 HOH HOH . J 4 HOH B 2 702 224 HOH HOH . J 4 HOH B 3 703 270 HOH HOH . J 4 HOH B 4 704 109 HOH HOH . J 4 HOH B 5 705 110 HOH HOH . J 4 HOH B 6 706 1 HOH HOH . J 4 HOH B 7 707 125 HOH HOH . J 4 HOH B 8 708 138 HOH HOH . J 4 HOH B 9 709 223 HOH HOH . J 4 HOH B 10 710 250 HOH HOH . J 4 HOH B 11 711 60 HOH HOH . J 4 HOH B 12 712 141 HOH HOH . J 4 HOH B 13 713 117 HOH HOH . J 4 HOH B 14 714 26 HOH HOH . J 4 HOH B 15 715 12 HOH HOH . J 4 HOH B 16 716 81 HOH HOH . J 4 HOH B 17 717 50 HOH HOH . J 4 HOH B 18 718 140 HOH HOH . J 4 HOH B 19 719 115 HOH HOH . J 4 HOH B 20 720 95 HOH HOH . J 4 HOH B 21 721 8 HOH HOH . J 4 HOH B 22 722 87 HOH HOH . J 4 HOH B 23 723 24 HOH HOH . J 4 HOH B 24 724 7 HOH HOH . J 4 HOH B 25 725 62 HOH HOH . J 4 HOH B 26 726 56 HOH HOH . J 4 HOH B 27 727 37 HOH HOH . J 4 HOH B 28 728 2 HOH HOH . J 4 HOH B 29 729 40 HOH HOH . J 4 HOH B 30 730 41 HOH HOH . J 4 HOH B 31 731 127 HOH HOH . J 4 HOH B 32 732 90 HOH HOH . J 4 HOH B 33 733 121 HOH HOH . J 4 HOH B 34 734 113 HOH HOH . J 4 HOH B 35 735 272 HOH HOH . J 4 HOH B 36 736 133 HOH HOH . J 4 HOH B 37 737 251 HOH HOH . J 4 HOH B 38 738 274 HOH HOH . J 4 HOH B 39 739 105 HOH HOH . J 4 HOH B 40 740 93 HOH HOH . J 4 HOH B 41 741 101 HOH HOH . J 4 HOH B 42 742 137 HOH HOH . J 4 HOH B 43 743 231 HOH HOH . J 4 HOH B 44 744 25 HOH HOH . J 4 HOH B 45 745 227 HOH HOH . J 4 HOH B 46 746 54 HOH HOH . J 4 HOH B 47 747 248 HOH HOH . J 4 HOH B 48 748 226 HOH HOH . J 4 HOH B 49 749 237 HOH HOH . J 4 HOH B 50 750 10 HOH HOH . J 4 HOH B 51 751 67 HOH HOH . J 4 HOH B 52 752 271 HOH HOH . J 4 HOH B 53 753 241 HOH HOH . J 4 HOH B 54 754 213 HOH HOH . J 4 HOH B 55 755 64 HOH HOH . J 4 HOH B 56 756 108 HOH HOH . J 4 HOH B 57 757 11 HOH HOH . J 4 HOH B 58 758 104 HOH HOH . J 4 HOH B 59 759 118 HOH HOH . J 4 HOH B 60 760 86 HOH HOH . J 4 HOH B 61 761 245 HOH HOH . J 4 HOH B 62 762 4 HOH HOH . J 4 HOH B 63 763 71 HOH HOH . J 4 HOH B 64 764 136 HOH HOH . J 4 HOH B 65 765 273 HOH HOH . J 4 HOH B 66 766 219 HOH HOH . J 4 HOH B 67 767 98 HOH HOH . J 4 HOH B 68 768 43 HOH HOH . J 4 HOH B 69 769 73 HOH HOH . J 4 HOH B 70 770 236 HOH HOH . J 4 HOH B 71 771 225 HOH HOH . J 4 HOH B 72 772 120 HOH HOH . J 4 HOH B 73 773 253 HOH HOH . J 4 HOH B 74 774 66 HOH HOH . J 4 HOH B 75 775 220 HOH HOH . J 4 HOH B 76 776 45 HOH HOH . J 4 HOH B 77 777 210 HOH HOH . J 4 HOH B 78 778 130 HOH HOH . J 4 HOH B 79 779 36 HOH HOH . J 4 HOH B 80 780 149 HOH HOH . J 4 HOH B 81 781 252 HOH HOH . J 4 HOH B 82 782 126 HOH HOH . J 4 HOH B 83 783 208 HOH HOH . J 4 HOH B 84 784 233 HOH HOH . J 4 HOH B 85 785 266 HOH HOH . J 4 HOH B 86 786 215 HOH HOH . J 4 HOH B 87 787 232 HOH HOH . J 4 HOH B 88 788 199 HOH HOH . J 4 HOH B 89 789 99 HOH HOH . J 4 HOH B 90 790 44 HOH HOH . J 4 HOH B 91 791 269 HOH HOH . J 4 HOH B 92 792 249 HOH HOH . J 4 HOH B 93 793 83 HOH HOH . J 4 HOH B 94 794 218 HOH HOH . J 4 HOH B 95 795 268 HOH HOH . J 4 HOH B 96 796 107 HOH HOH . J 4 HOH B 97 797 239 HOH HOH . J 4 HOH B 98 798 238 HOH HOH . J 4 HOH B 99 799 216 HOH HOH . J 4 HOH B 100 800 228 HOH HOH . J 4 HOH B 101 801 275 HOH HOH . J 4 HOH B 102 802 214 HOH HOH . J 4 HOH B 103 803 96 HOH HOH . J 4 HOH B 104 804 14 HOH HOH . J 4 HOH B 105 805 247 HOH HOH . J 4 HOH B 106 806 217 HOH HOH . J 4 HOH B 107 807 242 HOH HOH . J 4 HOH B 108 808 240 HOH HOH . J 4 HOH B 109 809 244 HOH HOH . J 4 HOH B 110 810 128 HOH HOH . J 4 HOH B 111 811 112 HOH HOH . J 4 HOH B 112 812 229 HOH HOH . J 4 HOH B 113 813 135 HOH HOH . J 4 HOH B 114 814 221 HOH HOH . J 4 HOH B 115 815 267 HOH HOH . J 4 HOH B 116 816 276 HOH HOH . J 4 HOH B 117 817 243 HOH HOH . J 4 HOH B 118 818 222 HOH HOH . J 4 HOH B 119 819 235 HOH HOH . J 4 HOH B 120 820 246 HOH HOH . J 4 HOH B 121 821 200 HOH HOH . J 4 HOH B 122 822 234 HOH HOH . J 4 HOH B 123 823 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . H 3 26.004 10.611 6.089 1 19.24 ? P PO4 603 B 1 HETATM 2 O O1 PO4 . . . H 3 25.867 11.036 4.645 1 16.04 ? O1 PO4 603 B 1 HETATM 3 O O2 PO4 . . . H 3 25.404 9.241 6.312 1 32.88 ? O2 PO4 603 B 1 HETATM 4 O O3 PO4 . . . H 3 25.303 11.611 6.976 1 28.24 ? O3 PO4 603 B 1 HETATM 5 O O4 PO4 . . . H 3 27.468 10.524 6.403 1 10.72 ? O4 PO4 603 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #