data_6DDH # _model_server_result.job_id mzzE7qu_Z16ard8UaM43zQ _model_server_result.datetime_utc '2024-11-15 10:00:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ddh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6DDH # _exptl.entry_id 6DDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DDH _cell.length_a 91.916 _cell.length_b 127.762 _cell.length_c 130.305 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 130.305 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 130.305 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD2 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 72 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 54 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C5' _struct_conn.ptnr2_label_comp_id IMP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id IMP _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.383 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 173 n n P O2P IMP sing 174 n n P O3P IMP sing 175 n n P O5' IMP sing 176 n n O2P HOP2 IMP sing 177 n n O3P HOP3 IMP sing 178 n n O5' C5' IMP sing 179 n n C5' C4' IMP sing 180 n n C5' "H5'1" IMP sing 181 n n C5' "H5'2" IMP sing 182 n n C4' O4' IMP sing 183 n n C4' C3' IMP sing 184 n n C4' H4' IMP sing 185 n n O4' C1' IMP sing 186 n n C3' O3' IMP sing 187 n n C3' C2' IMP sing 188 n n C3' H3' IMP sing 189 n n O3' HO3' IMP sing 190 n n C2' O2' IMP sing 191 n n C2' C1' IMP sing 192 n n C2' H2' IMP sing 193 n n O2' HO2' IMP sing 194 n n C1' N9 IMP sing 195 n n C1' H1' IMP sing 196 n n N9 C8 IMP sing 197 n y N9 C4 IMP sing 198 n y C8 N7 IMP doub 199 n y C8 H8 IMP sing 200 n n N7 C5 IMP sing 201 n y C5 C6 IMP sing 202 n n C5 C4 IMP doub 203 n y C6 O6 IMP doub 204 n n C6 N1 IMP sing 205 n n N1 C2 IMP sing 206 n n N1 HN1 IMP sing 207 n n C2 N3 IMP doub 208 n n C2 H2 IMP sing 209 n n N3 C4 IMP sing 210 n n # _atom_sites.entry_id 6DDH _atom_sites.fract_transf_matrix[1][1] 0.010879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 601 601 IMP IMP . C 3 HOH A 1 701 89 HOH HOH . C 3 HOH A 2 702 81 HOH HOH . C 3 HOH A 3 703 3 HOH HOH . C 3 HOH A 4 704 42 HOH HOH . C 3 HOH A 5 705 2 HOH HOH . C 3 HOH A 6 706 49 HOH HOH . C 3 HOH A 7 707 84 HOH HOH . C 3 HOH A 8 708 72 HOH HOH . C 3 HOH A 9 709 94 HOH HOH . C 3 HOH A 10 710 19 HOH HOH . C 3 HOH A 11 711 54 HOH HOH . C 3 HOH A 12 712 15 HOH HOH . C 3 HOH A 13 713 32 HOH HOH . C 3 HOH A 14 714 79 HOH HOH . C 3 HOH A 15 715 98 HOH HOH . C 3 HOH A 16 716 59 HOH HOH . C 3 HOH A 17 717 50 HOH HOH . C 3 HOH A 18 718 107 HOH HOH . C 3 HOH A 19 719 10 HOH HOH . C 3 HOH A 20 720 110 HOH HOH . C 3 HOH A 21 721 109 HOH HOH . C 3 HOH A 22 722 7 HOH HOH . C 3 HOH A 23 723 114 HOH HOH . C 3 HOH A 24 724 51 HOH HOH . C 3 HOH A 25 725 22 HOH HOH . C 3 HOH A 26 726 57 HOH HOH . C 3 HOH A 27 727 92 HOH HOH . C 3 HOH A 28 728 5 HOH HOH . C 3 HOH A 29 729 4 HOH HOH . C 3 HOH A 30 730 58 HOH HOH . C 3 HOH A 31 731 82 HOH HOH . C 3 HOH A 32 732 41 HOH HOH . C 3 HOH A 33 733 20 HOH HOH . C 3 HOH A 34 734 14 HOH HOH . C 3 HOH A 35 735 76 HOH HOH . C 3 HOH A 36 736 56 HOH HOH . C 3 HOH A 37 737 23 HOH HOH . C 3 HOH A 38 738 39 HOH HOH . C 3 HOH A 39 739 9 HOH HOH . C 3 HOH A 40 740 28 HOH HOH . C 3 HOH A 41 741 33 HOH HOH . C 3 HOH A 42 742 45 HOH HOH . C 3 HOH A 43 743 96 HOH HOH . C 3 HOH A 44 744 12 HOH HOH . C 3 HOH A 45 745 71 HOH HOH . C 3 HOH A 46 746 100 HOH HOH . C 3 HOH A 47 747 97 HOH HOH . C 3 HOH A 48 748 30 HOH HOH . C 3 HOH A 49 749 108 HOH HOH . C 3 HOH A 50 750 88 HOH HOH . C 3 HOH A 51 751 34 HOH HOH . C 3 HOH A 52 752 63 HOH HOH . C 3 HOH A 53 753 118 HOH HOH . C 3 HOH A 54 754 53 HOH HOH . C 3 HOH A 55 755 66 HOH HOH . C 3 HOH A 56 756 113 HOH HOH . C 3 HOH A 57 757 64 HOH HOH . C 3 HOH A 58 758 61 HOH HOH . C 3 HOH A 59 759 27 HOH HOH . C 3 HOH A 60 760 24 HOH HOH . C 3 HOH A 61 761 105 HOH HOH . C 3 HOH A 62 762 46 HOH HOH . C 3 HOH A 63 763 13 HOH HOH . C 3 HOH A 64 764 126 HOH HOH . C 3 HOH A 65 765 21 HOH HOH . C 3 HOH A 66 766 16 HOH HOH . C 3 HOH A 67 767 8 HOH HOH . C 3 HOH A 68 768 38 HOH HOH . C 3 HOH A 69 769 70 HOH HOH . C 3 HOH A 70 770 6 HOH HOH . C 3 HOH A 71 771 36 HOH HOH . C 3 HOH A 72 772 67 HOH HOH . C 3 HOH A 73 773 122 HOH HOH . C 3 HOH A 74 774 95 HOH HOH . C 3 HOH A 75 775 93 HOH HOH . C 3 HOH A 76 776 85 HOH HOH . C 3 HOH A 77 777 75 HOH HOH . C 3 HOH A 78 778 83 HOH HOH . C 3 HOH A 79 779 43 HOH HOH . C 3 HOH A 80 780 47 HOH HOH . C 3 HOH A 81 781 44 HOH HOH . C 3 HOH A 82 782 37 HOH HOH . C 3 HOH A 83 783 91 HOH HOH . C 3 HOH A 84 784 65 HOH HOH . C 3 HOH A 85 785 35 HOH HOH . C 3 HOH A 86 786 29 HOH HOH . C 3 HOH A 87 787 1 HOH HOH . C 3 HOH A 88 788 123 HOH HOH . C 3 HOH A 89 789 102 HOH HOH . C 3 HOH A 90 790 112 HOH HOH . C 3 HOH A 91 791 68 HOH HOH . C 3 HOH A 92 792 116 HOH HOH . C 3 HOH A 93 793 62 HOH HOH . C 3 HOH A 94 794 48 HOH HOH . C 3 HOH A 95 795 11 HOH HOH . C 3 HOH A 96 796 80 HOH HOH . C 3 HOH A 97 797 17 HOH HOH . C 3 HOH A 98 798 101 HOH HOH . C 3 HOH A 99 799 40 HOH HOH . C 3 HOH A 100 800 25 HOH HOH . C 3 HOH A 101 801 103 HOH HOH . C 3 HOH A 102 802 86 HOH HOH . C 3 HOH A 103 803 26 HOH HOH . C 3 HOH A 104 804 119 HOH HOH . C 3 HOH A 105 805 111 HOH HOH . C 3 HOH A 106 806 55 HOH HOH . C 3 HOH A 107 807 60 HOH HOH . C 3 HOH A 108 808 73 HOH HOH . C 3 HOH A 109 809 99 HOH HOH . C 3 HOH A 110 810 31 HOH HOH . C 3 HOH A 111 811 121 HOH HOH . C 3 HOH A 112 812 74 HOH HOH . C 3 HOH A 113 813 120 HOH HOH . C 3 HOH A 114 814 106 HOH HOH . C 3 HOH A 115 815 52 HOH HOH . C 3 HOH A 116 816 77 HOH HOH . C 3 HOH A 117 817 104 HOH HOH . C 3 HOH A 118 818 117 HOH HOH . C 3 HOH A 119 819 90 HOH HOH . C 3 HOH A 120 820 115 HOH HOH . C 3 HOH A 121 821 127 HOH HOH . C 3 HOH A 122 822 69 HOH HOH . C 3 HOH A 123 823 124 HOH HOH . C 3 HOH A 124 824 87 HOH HOH . C 3 HOH A 125 825 18 HOH HOH . C 3 HOH A 126 826 78 HOH HOH . C 3 HOH A 127 827 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 7.174 18.539 43.151 1 51.63 ? P IMP 601 A 1 HETATM 2 O O1P IMP . . . B 2 8.069 19.065 42.048 1 50.17 ? O1P IMP 601 A 1 HETATM 3 O O2P IMP . . . B 2 7.914 17.991 44.348 1 42.47 ? O2P IMP 601 A 1 HETATM 4 O O3P IMP . . . B 2 6.293 19.665 43.639 1 49.43 ? O3P IMP 601 A 1 HETATM 5 O O5' IMP . . . B 2 6.244 17.329 42.638 1 63.5 ? O5' IMP 601 A 1 HETATM 6 C C5' IMP . . . B 2 5.496 17.354 41.407 1 74.7 ? C5' IMP 601 A 1 HETATM 7 C C4' IMP . . . B 2 4.946 15.966 41.077 1 77.8 ? C4' IMP 601 A 1 HETATM 8 O O4' IMP . . . B 2 3.843 15.601 41.961 1 72.96 ? O4' IMP 601 A 1 HETATM 9 C C3' IMP . . . B 2 4.441 15.747 39.636 1 82.55 ? C3' IMP 601 A 1 HETATM 10 O O3' IMP . . . B 2 5.066 14.594 39.066 1 81.58 ? O3' IMP 601 A 1 HETATM 11 C C2' IMP . . . B 2 2.943 15.475 39.809 1 76.22 ? C2' IMP 601 A 1 HETATM 12 O O2' IMP . . . B 2 2.403 14.6 38.84 1 70.48 ? O2' IMP 601 A 1 HETATM 13 C C1' IMP . . . B 2 2.881 14.881 41.217 1 74.84 ? C1' IMP 601 A 1 HETATM 14 N N9 IMP . . . B 2 1.551 15.009 41.849 1 75.46 ? N9 IMP 601 A 1 HETATM 15 C C8 IMP . . . B 2 1.009 16.157 42.37 1 75.84 ? C8 IMP 601 A 1 HETATM 16 N N7 IMP . . . B 2 -0.235 15.902 42.836 1 70.65 ? N7 IMP 601 A 1 HETATM 17 C C5 IMP . . . B 2 -0.526 14.602 42.627 1 66.64 ? C5 IMP 601 A 1 HETATM 18 C C6 IMP . . . B 2 -1.657 13.831 42.916 1 63.06 ? C6 IMP 601 A 1 HETATM 19 O O6 IMP . . . B 2 -2.726 14.37 43.212 1 59.94 ? O6 IMP 601 A 1 HETATM 20 N N1 IMP . . . B 2 -1.668 12.493 42.585 1 65.55 ? N1 IMP 601 A 1 HETATM 21 C C2 IMP . . . B 2 -0.567 11.936 41.969 1 71.91 ? C2 IMP 601 A 1 HETATM 22 N N3 IMP . . . B 2 0.547 12.711 41.687 1 72.37 ? N3 IMP 601 A 1 HETATM 23 C C4 IMP . . . B 2 0.582 14.028 42.007 1 70.46 ? C4 IMP 601 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #