data_6DDI
#
_model_server_result.job_id            xMMfI71Fxxda8d_D9OGqjQ 
_model_server_result.datetime_utc      '2024-11-01 09:41:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ddi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":304}' 
#
_entry.id    6DDI 
#
_exptl.entry_id    6DDI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.17 
_cell.angle_gamma         90 
_cell.entry_id            6DDI 
_cell.length_a            118.01 
_cell.length_b            55.851 
_cell.length_c            66.613 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DDI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,I,J,L,M 1 1 
C,K,N 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -4.843831 0 66.436655 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 J N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 91 n n 
C1 C2 EDO sing 92 n n 
C1 H11 EDO sing 93 n n 
C1 H12 EDO sing 94 n n 
O1 HO1 EDO sing 95 n n 
C2 O2 EDO sing 96 n n 
C2 H21 EDO sing 97 n n 
C2 H22 EDO sing 98 n n 
O2 HO2 EDO sing 99 n n 
#
_atom_sites.entry_id                     6DDI 
_atom_sites.fract_transf_matrix[1][1]    0.008474 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000618 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017905 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 G7V A 1 301 1 G7V INH . 
E 3 SO4 A 1 302 1 SO4 SO4 . 
F 4 EDO A 1 303 1 EDO EDO . 
G 4 EDO A 1 304 3 EDO EDO . 
H 2 G7V B 1 301 2 G7V INH . 
I 5 03S B 1 302 1 03S EPE . 
J 4 EDO B 1 303 2 EDO EDO . 
K 2 G7V C 1 301 3 G7V INH . 
L 6 HOH A 1 401 131 HOH HOH . 
L 6 HOH A 2 402 85 HOH HOH . 
L 6 HOH A 3 403 254 HOH HOH . 
L 6 HOH A 4 404 255 HOH HOH . 
L 6 HOH A 5 405 160 HOH HOH . 
L 6 HOH A 6 406 193 HOH HOH . 
L 6 HOH A 7 407 56 HOH HOH . 
L 6 HOH A 8 408 51 HOH HOH . 
L 6 HOH A 9 409 163 HOH HOH . 
L 6 HOH A 10 410 221 HOH HOH . 
L 6 HOH A 11 411 48 HOH HOH . 
L 6 HOH A 12 412 5 HOH HOH . 
L 6 HOH A 13 413 140 HOH HOH . 
L 6 HOH A 14 414 124 HOH HOH . 
L 6 HOH A 15 415 13 HOH HOH . 
L 6 HOH A 16 416 210 HOH HOH . 
L 6 HOH A 17 417 121 HOH HOH . 
L 6 HOH A 18 418 135 HOH HOH . 
L 6 HOH A 19 419 205 HOH HOH . 
L 6 HOH A 20 420 14 HOH HOH . 
L 6 HOH A 21 421 117 HOH HOH . 
L 6 HOH A 22 422 7 HOH HOH . 
L 6 HOH A 23 423 80 HOH HOH . 
L 6 HOH A 24 424 114 HOH HOH . 
L 6 HOH A 25 425 156 HOH HOH . 
L 6 HOH A 26 426 53 HOH HOH . 
L 6 HOH A 27 427 234 HOH HOH . 
L 6 HOH A 28 428 246 HOH HOH . 
L 6 HOH A 29 429 173 HOH HOH . 
L 6 HOH A 30 430 49 HOH HOH . 
L 6 HOH A 31 431 64 HOH HOH . 
L 6 HOH A 32 432 137 HOH HOH . 
L 6 HOH A 33 433 112 HOH HOH . 
L 6 HOH A 34 434 26 HOH HOH . 
L 6 HOH A 35 435 146 HOH HOH . 
L 6 HOH A 36 436 192 HOH HOH . 
L 6 HOH A 37 437 46 HOH HOH . 
L 6 HOH A 38 438 79 HOH HOH . 
L 6 HOH A 39 439 106 HOH HOH . 
L 6 HOH A 40 440 36 HOH HOH . 
L 6 HOH A 41 441 29 HOH HOH . 
L 6 HOH A 42 442 30 HOH HOH . 
L 6 HOH A 43 443 50 HOH HOH . 
L 6 HOH A 44 444 4 HOH HOH . 
L 6 HOH A 45 445 38 HOH HOH . 
L 6 HOH A 46 446 20 HOH HOH . 
L 6 HOH A 47 447 231 HOH HOH . 
L 6 HOH A 48 448 1 HOH HOH . 
L 6 HOH A 49 449 8 HOH HOH . 
L 6 HOH A 50 450 136 HOH HOH . 
L 6 HOH A 51 451 100 HOH HOH . 
L 6 HOH A 52 452 204 HOH HOH . 
L 6 HOH A 53 453 82 HOH HOH . 
L 6 HOH A 54 454 128 HOH HOH . 
L 6 HOH A 55 455 28 HOH HOH . 
L 6 HOH A 56 456 220 HOH HOH . 
L 6 HOH A 57 457 168 HOH HOH . 
L 6 HOH A 58 458 206 HOH HOH . 
L 6 HOH A 59 459 40 HOH HOH . 
L 6 HOH A 60 460 215 HOH HOH . 
L 6 HOH A 61 461 154 HOH HOH . 
L 6 HOH A 62 462 87 HOH HOH . 
L 6 HOH A 63 463 236 HOH HOH . 
L 6 HOH A 64 464 101 HOH HOH . 
L 6 HOH A 65 465 42 HOH HOH . 
L 6 HOH A 66 466 228 HOH HOH . 
L 6 HOH A 67 467 211 HOH HOH . 
L 6 HOH A 68 468 172 HOH HOH . 
L 6 HOH A 69 469 243 HOH HOH . 
L 6 HOH A 70 470 52 HOH HOH . 
L 6 HOH A 71 471 175 HOH HOH . 
L 6 HOH A 72 472 245 HOH HOH . 
L 6 HOH A 73 473 19 HOH HOH . 
L 6 HOH A 74 474 143 HOH HOH . 
L 6 HOH A 75 475 76 HOH HOH . 
L 6 HOH A 76 476 97 HOH HOH . 
L 6 HOH A 77 477 74 HOH HOH . 
L 6 HOH A 78 478 10 HOH HOH . 
L 6 HOH A 79 479 222 HOH HOH . 
L 6 HOH A 80 480 65 HOH HOH . 
L 6 HOH A 81 481 142 HOH HOH . 
L 6 HOH A 82 482 199 HOH HOH . 
L 6 HOH A 83 483 195 HOH HOH . 
L 6 HOH A 84 484 244 HOH HOH . 
L 6 HOH A 85 485 145 HOH HOH . 
L 6 HOH A 86 486 116 HOH HOH . 
L 6 HOH A 87 487 184 HOH HOH . 
L 6 HOH A 88 488 187 HOH HOH . 
L 6 HOH A 89 489 126 HOH HOH . 
L 6 HOH A 90 490 223 HOH HOH . 
L 6 HOH A 91 491 190 HOH HOH . 
L 6 HOH A 92 492 96 HOH HOH . 
L 6 HOH A 93 493 200 HOH HOH . 
L 6 HOH A 94 494 197 HOH HOH . 
L 6 HOH A 95 495 70 HOH HOH . 
L 6 HOH A 96 496 98 HOH HOH . 
L 6 HOH A 97 497 170 HOH HOH . 
L 6 HOH A 98 498 230 HOH HOH . 
L 6 HOH A 99 499 229 HOH HOH . 
L 6 HOH A 100 500 84 HOH HOH . 
L 6 HOH A 101 501 103 HOH HOH . 
L 6 HOH A 102 502 202 HOH HOH . 
M 6 HOH B 1 401 122 HOH HOH . 
M 6 HOH B 2 402 162 HOH HOH . 
M 6 HOH B 3 403 251 HOH HOH . 
M 6 HOH B 4 404 185 HOH HOH . 
M 6 HOH B 5 405 73 HOH HOH . 
M 6 HOH B 6 406 164 HOH HOH . 
M 6 HOH B 7 407 92 HOH HOH . 
M 6 HOH B 8 408 94 HOH HOH . 
M 6 HOH B 9 409 67 HOH HOH . 
M 6 HOH B 10 410 115 HOH HOH . 
M 6 HOH B 11 411 54 HOH HOH . 
M 6 HOH B 12 412 91 HOH HOH . 
M 6 HOH B 13 413 2 HOH HOH . 
M 6 HOH B 14 414 225 HOH HOH . 
M 6 HOH B 15 415 169 HOH HOH . 
M 6 HOH B 16 416 83 HOH HOH . 
M 6 HOH B 17 417 120 HOH HOH . 
M 6 HOH B 18 418 33 HOH HOH . 
M 6 HOH B 19 419 138 HOH HOH . 
M 6 HOH B 20 420 161 HOH HOH . 
M 6 HOH B 21 421 167 HOH HOH . 
M 6 HOH B 22 422 89 HOH HOH . 
M 6 HOH B 23 423 15 HOH HOH . 
M 6 HOH B 24 424 41 HOH HOH . 
M 6 HOH B 25 425 88 HOH HOH . 
M 6 HOH B 26 426 57 HOH HOH . 
M 6 HOH B 27 427 157 HOH HOH . 
M 6 HOH B 28 428 12 HOH HOH . 
M 6 HOH B 29 429 155 HOH HOH . 
M 6 HOH B 30 430 45 HOH HOH . 
M 6 HOH B 31 431 183 HOH HOH . 
M 6 HOH B 32 432 6 HOH HOH . 
M 6 HOH B 33 433 68 HOH HOH . 
M 6 HOH B 34 434 32 HOH HOH . 
M 6 HOH B 35 435 3 HOH HOH . 
M 6 HOH B 36 436 224 HOH HOH . 
M 6 HOH B 37 437 59 HOH HOH . 
M 6 HOH B 38 438 58 HOH HOH . 
M 6 HOH B 39 439 39 HOH HOH . 
M 6 HOH B 40 440 194 HOH HOH . 
M 6 HOH B 41 441 139 HOH HOH . 
M 6 HOH B 42 442 78 HOH HOH . 
M 6 HOH B 43 443 34 HOH HOH . 
M 6 HOH B 44 444 144 HOH HOH . 
M 6 HOH B 45 445 86 HOH HOH . 
M 6 HOH B 46 446 179 HOH HOH . 
M 6 HOH B 47 447 25 HOH HOH . 
M 6 HOH B 48 448 253 HOH HOH . 
M 6 HOH B 49 449 108 HOH HOH . 
M 6 HOH B 50 450 31 HOH HOH . 
M 6 HOH B 51 451 208 HOH HOH . 
M 6 HOH B 52 452 63 HOH HOH . 
M 6 HOH B 53 453 158 HOH HOH . 
M 6 HOH B 54 454 150 HOH HOH . 
M 6 HOH B 55 455 102 HOH HOH . 
M 6 HOH B 56 456 104 HOH HOH . 
M 6 HOH B 57 457 207 HOH HOH . 
M 6 HOH B 58 458 27 HOH HOH . 
M 6 HOH B 59 459 77 HOH HOH . 
M 6 HOH B 60 460 226 HOH HOH . 
M 6 HOH B 61 461 21 HOH HOH . 
M 6 HOH B 62 462 182 HOH HOH . 
M 6 HOH B 63 463 134 HOH HOH . 
M 6 HOH B 64 464 176 HOH HOH . 
M 6 HOH B 65 465 149 HOH HOH . 
M 6 HOH B 66 466 201 HOH HOH . 
M 6 HOH B 67 467 95 HOH HOH . 
M 6 HOH B 68 468 238 HOH HOH . 
M 6 HOH B 69 469 196 HOH HOH . 
M 6 HOH B 70 470 252 HOH HOH . 
M 6 HOH B 71 471 198 HOH HOH . 
M 6 HOH B 72 472 111 HOH HOH . 
M 6 HOH B 73 473 232 HOH HOH . 
M 6 HOH B 74 474 203 HOH HOH . 
M 6 HOH B 75 475 159 HOH HOH . 
M 6 HOH B 76 476 181 HOH HOH . 
M 6 HOH B 77 477 171 HOH HOH . 
M 6 HOH B 78 478 186 HOH HOH . 
M 6 HOH B 79 479 152 HOH HOH . 
M 6 HOH B 80 480 61 HOH HOH . 
M 6 HOH B 81 481 218 HOH HOH . 
M 6 HOH B 82 482 107 HOH HOH . 
M 6 HOH B 83 483 214 HOH HOH . 
M 6 HOH B 84 484 93 HOH HOH . 
N 6 HOH C 1 401 71 HOH HOH . 
N 6 HOH C 2 402 235 HOH HOH . 
N 6 HOH C 3 403 151 HOH HOH . 
N 6 HOH C 4 404 237 HOH HOH . 
N 6 HOH C 5 405 217 HOH HOH . 
N 6 HOH C 6 406 43 HOH HOH . 
N 6 HOH C 7 407 9 HOH HOH . 
N 6 HOH C 8 408 180 HOH HOH . 
N 6 HOH C 9 409 16 HOH HOH . 
N 6 HOH C 10 410 105 HOH HOH . 
N 6 HOH C 11 411 109 HOH HOH . 
N 6 HOH C 12 412 213 HOH HOH . 
N 6 HOH C 13 413 66 HOH HOH . 
N 6 HOH C 14 414 60 HOH HOH . 
N 6 HOH C 15 415 99 HOH HOH . 
N 6 HOH C 16 416 24 HOH HOH . 
N 6 HOH C 17 417 23 HOH HOH . 
N 6 HOH C 18 418 216 HOH HOH . 
N 6 HOH C 19 419 17 HOH HOH . 
N 6 HOH C 20 420 11 HOH HOH . 
N 6 HOH C 21 421 133 HOH HOH . 
N 6 HOH C 22 422 123 HOH HOH . 
N 6 HOH C 23 423 22 HOH HOH . 
N 6 HOH C 24 424 212 HOH HOH . 
N 6 HOH C 25 425 81 HOH HOH . 
N 6 HOH C 26 426 18 HOH HOH . 
N 6 HOH C 27 427 47 HOH HOH . 
N 6 HOH C 28 428 178 HOH HOH . 
N 6 HOH C 29 429 69 HOH HOH . 
N 6 HOH C 30 430 125 HOH HOH . 
N 6 HOH C 31 431 177 HOH HOH . 
N 6 HOH C 32 432 119 HOH HOH . 
N 6 HOH C 33 433 209 HOH HOH . 
N 6 HOH C 34 434 35 HOH HOH . 
N 6 HOH C 35 435 62 HOH HOH . 
N 6 HOH C 36 436 227 HOH HOH . 
N 6 HOH C 37 437 132 HOH HOH . 
N 6 HOH C 38 438 153 HOH HOH . 
N 6 HOH C 39 439 219 HOH HOH . 
N 6 HOH C 40 440 191 HOH HOH . 
N 6 HOH C 41 441 129 HOH HOH . 
N 6 HOH C 42 442 148 HOH HOH . 
N 6 HOH C 43 443 110 HOH HOH . 
N 6 HOH C 44 444 37 HOH HOH . 
N 6 HOH C 45 445 141 HOH HOH . 
N 6 HOH C 46 446 130 HOH HOH . 
N 6 HOH C 47 447 165 HOH HOH . 
N 6 HOH C 48 448 55 HOH HOH . 
N 6 HOH C 49 449 72 HOH HOH . 
N 6 HOH C 50 450 44 HOH HOH . 
N 6 HOH C 51 451 166 HOH HOH . 
N 6 HOH C 52 452 174 HOH HOH . 
N 6 HOH C 53 453 90 HOH HOH . 
N 6 HOH C 54 454 247 HOH HOH . 
N 6 HOH C 55 455 188 HOH HOH . 
N 6 HOH C 56 456 233 HOH HOH . 
N 6 HOH C 57 457 113 HOH HOH . 
N 6 HOH C 58 458 189 HOH HOH . 
N 6 HOH C 59 459 248 HOH HOH . 
N 6 HOH C 60 460 127 HOH HOH . 
N 6 HOH C 61 461 118 HOH HOH . 
N 6 HOH C 62 462 147 HOH HOH . 
N 6 HOH C 63 463 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 4 16.625 21.653 -6.983 1 36.23 ? C1 EDO 304 A 1 
HETATM 2 O O1 EDO . . . G 4 16.265 20.5 -7.728 1 29.32 ? O1 EDO 304 A 1 
HETATM 3 C C2 EDO . . . G 4 15.36 22.252 -6.422 1 35.95 ? C2 EDO 304 A 1 
HETATM 4 O O2 EDO . . . G 4 15.704 23.562 -5.998 1 28.5 ? O2 EDO 304 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#