data_6DDJ # _model_server_result.job_id 6AyhT301kgSZiYkMMg2a9w _model_server_result.datetime_utc '2024-11-01 07:17:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ddj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 6DDJ # _exptl.entry_id 6DDJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DDJ _cell.length_a 52.357 _cell.length_b 72.328 _cell.length_c 32.004 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6DDJ _atom_sites.fract_transf_matrix[1][1] 0.0191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G7V A 1 501 1 G7V INH . C 3 EDO A 1 502 2 EDO EDO . D 3 EDO A 1 503 3 EDO EDO . E 3 EDO A 1 504 4 EDO EDO . F 3 EDO A 1 505 5 EDO EDO . G 3 EDO A 1 506 6 EDO EDO . H 4 HOH A 1 601 151 HOH HOH . H 4 HOH A 2 602 67 HOH HOH . H 4 HOH A 3 603 89 HOH HOH . H 4 HOH A 4 604 85 HOH HOH . H 4 HOH A 5 605 122 HOH HOH . H 4 HOH A 6 606 45 HOH HOH . H 4 HOH A 7 607 9 HOH HOH . H 4 HOH A 8 608 2 HOH HOH . H 4 HOH A 9 609 111 HOH HOH . H 4 HOH A 10 610 3 HOH HOH . H 4 HOH A 11 611 36 HOH HOH . H 4 HOH A 12 612 102 HOH HOH . H 4 HOH A 13 613 84 HOH HOH . H 4 HOH A 14 614 25 HOH HOH . H 4 HOH A 15 615 62 HOH HOH . H 4 HOH A 16 616 6 HOH HOH . H 4 HOH A 17 617 55 HOH HOH . H 4 HOH A 18 618 74 HOH HOH . H 4 HOH A 19 619 65 HOH HOH . H 4 HOH A 20 620 11 HOH HOH . H 4 HOH A 21 621 35 HOH HOH . H 4 HOH A 22 622 152 HOH HOH . H 4 HOH A 23 623 17 HOH HOH . H 4 HOH A 24 624 15 HOH HOH . H 4 HOH A 25 625 38 HOH HOH . H 4 HOH A 26 626 66 HOH HOH . H 4 HOH A 27 627 40 HOH HOH . H 4 HOH A 28 628 33 HOH HOH . H 4 HOH A 29 629 30 HOH HOH . H 4 HOH A 30 630 69 HOH HOH . H 4 HOH A 31 631 92 HOH HOH . H 4 HOH A 32 632 77 HOH HOH . H 4 HOH A 33 633 60 HOH HOH . H 4 HOH A 34 634 10 HOH HOH . H 4 HOH A 35 635 88 HOH HOH . H 4 HOH A 36 636 24 HOH HOH . H 4 HOH A 37 637 29 HOH HOH . H 4 HOH A 38 638 16 HOH HOH . H 4 HOH A 39 639 99 HOH HOH . H 4 HOH A 40 640 83 HOH HOH . H 4 HOH A 41 641 34 HOH HOH . H 4 HOH A 42 642 120 HOH HOH . H 4 HOH A 43 643 18 HOH HOH . H 4 HOH A 44 644 1 HOH HOH . H 4 HOH A 45 645 22 HOH HOH . H 4 HOH A 46 646 7 HOH HOH . H 4 HOH A 47 647 57 HOH HOH . H 4 HOH A 48 648 91 HOH HOH . H 4 HOH A 49 649 14 HOH HOH . H 4 HOH A 50 650 52 HOH HOH . H 4 HOH A 51 651 80 HOH HOH . H 4 HOH A 52 652 75 HOH HOH . H 4 HOH A 53 653 43 HOH HOH . H 4 HOH A 54 654 21 HOH HOH . H 4 HOH A 55 655 31 HOH HOH . H 4 HOH A 56 656 13 HOH HOH . H 4 HOH A 57 657 150 HOH HOH . H 4 HOH A 58 658 5 HOH HOH . H 4 HOH A 59 659 135 HOH HOH . H 4 HOH A 60 660 64 HOH HOH . H 4 HOH A 61 661 20 HOH HOH . H 4 HOH A 62 662 71 HOH HOH . H 4 HOH A 63 663 28 HOH HOH . H 4 HOH A 64 664 58 HOH HOH . H 4 HOH A 65 665 12 HOH HOH . H 4 HOH A 66 666 94 HOH HOH . H 4 HOH A 67 667 105 HOH HOH . H 4 HOH A 68 668 81 HOH HOH . H 4 HOH A 69 669 147 HOH HOH . H 4 HOH A 70 670 68 HOH HOH . H 4 HOH A 71 671 59 HOH HOH . H 4 HOH A 72 672 104 HOH HOH . H 4 HOH A 73 673 70 HOH HOH . H 4 HOH A 74 674 19 HOH HOH . H 4 HOH A 75 675 56 HOH HOH . H 4 HOH A 76 676 132 HOH HOH . H 4 HOH A 77 677 47 HOH HOH . H 4 HOH A 78 678 95 HOH HOH . H 4 HOH A 79 679 37 HOH HOH . H 4 HOH A 80 680 116 HOH HOH . H 4 HOH A 81 681 27 HOH HOH . H 4 HOH A 82 682 54 HOH HOH . H 4 HOH A 83 683 39 HOH HOH . H 4 HOH A 84 684 26 HOH HOH . H 4 HOH A 85 685 8 HOH HOH . H 4 HOH A 86 686 50 HOH HOH . H 4 HOH A 87 687 145 HOH HOH . H 4 HOH A 88 688 131 HOH HOH . H 4 HOH A 89 689 127 HOH HOH . H 4 HOH A 90 690 128 HOH HOH . H 4 HOH A 91 691 110 HOH HOH . H 4 HOH A 92 692 61 HOH HOH . H 4 HOH A 93 693 4 HOH HOH . H 4 HOH A 94 694 73 HOH HOH . H 4 HOH A 95 695 76 HOH HOH . H 4 HOH A 96 696 138 HOH HOH . H 4 HOH A 97 697 49 HOH HOH . H 4 HOH A 98 698 126 HOH HOH . H 4 HOH A 99 699 79 HOH HOH . H 4 HOH A 100 700 133 HOH HOH . H 4 HOH A 101 701 48 HOH HOH . H 4 HOH A 102 702 44 HOH HOH . H 4 HOH A 103 703 97 HOH HOH . H 4 HOH A 104 704 98 HOH HOH . H 4 HOH A 105 705 148 HOH HOH . H 4 HOH A 106 706 86 HOH HOH . H 4 HOH A 107 707 117 HOH HOH . H 4 HOH A 108 708 112 HOH HOH . H 4 HOH A 109 709 63 HOH HOH . H 4 HOH A 110 710 23 HOH HOH . H 4 HOH A 111 711 46 HOH HOH . H 4 HOH A 112 712 130 HOH HOH . H 4 HOH A 113 713 153 HOH HOH . H 4 HOH A 114 714 53 HOH HOH . H 4 HOH A 115 715 121 HOH HOH . H 4 HOH A 116 716 125 HOH HOH . H 4 HOH A 117 717 51 HOH HOH . H 4 HOH A 118 718 144 HOH HOH . H 4 HOH A 119 719 96 HOH HOH . H 4 HOH A 120 720 137 HOH HOH . H 4 HOH A 121 721 149 HOH HOH . H 4 HOH A 122 722 140 HOH HOH . H 4 HOH A 123 723 139 HOH HOH . H 4 HOH A 124 724 134 HOH HOH . H 4 HOH A 125 725 72 HOH HOH . H 4 HOH A 126 726 124 HOH HOH . H 4 HOH A 127 727 107 HOH HOH . H 4 HOH A 128 728 42 HOH HOH . H 4 HOH A 129 729 82 HOH HOH . H 4 HOH A 130 730 123 HOH HOH . H 4 HOH A 131 731 109 HOH HOH . H 4 HOH A 132 732 129 HOH HOH . H 4 HOH A 133 733 136 HOH HOH . H 4 HOH A 134 734 106 HOH HOH . H 4 HOH A 135 735 142 HOH HOH . H 4 HOH A 136 736 90 HOH HOH . H 4 HOH A 137 737 119 HOH HOH . H 4 HOH A 138 738 32 HOH HOH . H 4 HOH A 139 739 146 HOH HOH . H 4 HOH A 140 740 78 HOH HOH . H 4 HOH A 141 741 108 HOH HOH . H 4 HOH A 142 742 93 HOH HOH . H 4 HOH A 143 743 103 HOH HOH . H 4 HOH A 144 744 100 HOH HOH . H 4 HOH A 145 745 87 HOH HOH . H 4 HOH A 146 746 41 HOH HOH . H 4 HOH A 147 747 101 HOH HOH . H 4 HOH A 148 748 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 20.07 81.116 36.258 1 40.12 ? C1 EDO 506 A 1 HETATM 2 O O1 EDO . . . G 3 21.409 81.303 36.739 1 38.88 ? O1 EDO 506 A 1 HETATM 3 C C2 EDO . . . G 3 19.15 82.175 36.851 1 41.07 ? C2 EDO 506 A 1 HETATM 4 O O2 EDO . . . G 3 19.353 83.411 36.162 1 42.11 ? O2 EDO 506 A 1 HETATM 5 H H11 EDO . . . G 3 19.714 80.122 36.537 1 48.16 ? H11 EDO 506 A 1 HETATM 6 H H12 EDO . . . G 3 20.058 81.187 35.168 1 48.16 ? H12 EDO 506 A 1 HETATM 7 H HO1 EDO . . . G 3 21.986 80.627 36.358 1 46.66 ? HO1 EDO 506 A 1 HETATM 8 H H21 EDO . . . G 3 19.368 82.302 37.914 1 49.29 ? H21 EDO 506 A 1 HETATM 9 H H22 EDO . . . G 3 18.109 81.86 36.75 1 49.29 ? H22 EDO 506 A 1 HETATM 10 H HO2 EDO . . . G 3 18.771 84.088 36.535 1 50.55 ? HO2 EDO 506 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #