data_6DDO # _model_server_result.job_id tvuYduTMusHPicQcT_tlIg _model_server_result.datetime_utc '2024-11-16 10:02:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ddo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 6DDO # _exptl.entry_id 6DDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DDO _cell.length_a 122.103 _cell.length_b 173.142 _cell.length_c 123.265 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 61.6325 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 6DDO _atom_sites.fract_transf_matrix[1][1] 0.00819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 601 601 PO4 PO4 . D 2 PO4 A 1 602 602 PO4 PO4 . E 2 PO4 B 1 601 601 PO4 PO4 . F 2 PO4 B 1 602 602 PO4 PO4 . G 3 HOH A 1 701 104 HOH HOH . G 3 HOH A 2 702 145 HOH HOH . G 3 HOH A 3 703 131 HOH HOH . G 3 HOH A 4 704 74 HOH HOH . G 3 HOH A 5 705 50 HOH HOH . G 3 HOH A 6 706 14 HOH HOH . G 3 HOH A 7 707 39 HOH HOH . G 3 HOH A 8 708 99 HOH HOH . G 3 HOH A 9 709 44 HOH HOH . G 3 HOH A 10 710 133 HOH HOH . G 3 HOH A 11 711 46 HOH HOH . G 3 HOH A 12 712 97 HOH HOH . G 3 HOH A 13 713 3 HOH HOH . G 3 HOH A 14 714 84 HOH HOH . G 3 HOH A 15 715 77 HOH HOH . G 3 HOH A 16 716 136 HOH HOH . G 3 HOH A 17 717 12 HOH HOH . G 3 HOH A 18 718 45 HOH HOH . G 3 HOH A 19 719 82 HOH HOH . G 3 HOH A 20 720 140 HOH HOH . G 3 HOH A 21 721 23 HOH HOH . G 3 HOH A 22 722 9 HOH HOH . G 3 HOH A 23 723 90 HOH HOH . G 3 HOH A 24 724 141 HOH HOH . G 3 HOH A 25 725 144 HOH HOH . G 3 HOH A 26 726 22 HOH HOH . G 3 HOH A 27 727 21 HOH HOH . G 3 HOH A 28 728 4 HOH HOH . G 3 HOH A 29 729 175 HOH HOH . G 3 HOH A 30 730 36 HOH HOH . G 3 HOH A 31 731 68 HOH HOH . G 3 HOH A 32 732 137 HOH HOH . G 3 HOH A 33 733 18 HOH HOH . G 3 HOH A 34 734 5 HOH HOH . G 3 HOH A 35 735 123 HOH HOH . G 3 HOH A 36 736 34 HOH HOH . G 3 HOH A 37 737 108 HOH HOH . G 3 HOH A 38 738 2 HOH HOH . G 3 HOH A 39 739 6 HOH HOH . G 3 HOH A 40 740 101 HOH HOH . G 3 HOH A 41 741 138 HOH HOH . G 3 HOH A 42 742 83 HOH HOH . G 3 HOH A 43 743 176 HOH HOH . G 3 HOH A 44 744 67 HOH HOH . G 3 HOH A 45 745 162 HOH HOH . G 3 HOH A 46 746 16 HOH HOH . G 3 HOH A 47 747 48 HOH HOH . G 3 HOH A 48 748 146 HOH HOH . G 3 HOH A 49 749 57 HOH HOH . G 3 HOH A 50 750 159 HOH HOH . G 3 HOH A 51 751 126 HOH HOH . G 3 HOH A 52 752 31 HOH HOH . G 3 HOH A 53 753 60 HOH HOH . G 3 HOH A 54 754 111 HOH HOH . G 3 HOH A 55 755 169 HOH HOH . G 3 HOH A 56 756 49 HOH HOH . G 3 HOH A 57 757 167 HOH HOH . G 3 HOH A 58 758 112 HOH HOH . G 3 HOH A 59 759 150 HOH HOH . G 3 HOH A 60 760 19 HOH HOH . G 3 HOH A 61 761 89 HOH HOH . G 3 HOH A 62 762 155 HOH HOH . G 3 HOH A 63 763 132 HOH HOH . G 3 HOH A 64 764 129 HOH HOH . G 3 HOH A 65 765 116 HOH HOH . G 3 HOH A 66 766 79 HOH HOH . G 3 HOH A 67 767 51 HOH HOH . G 3 HOH A 68 768 109 HOH HOH . G 3 HOH A 69 769 143 HOH HOH . G 3 HOH A 70 770 17 HOH HOH . G 3 HOH A 71 771 59 HOH HOH . G 3 HOH A 72 772 80 HOH HOH . G 3 HOH A 73 773 103 HOH HOH . G 3 HOH A 74 774 54 HOH HOH . G 3 HOH A 75 775 13 HOH HOH . G 3 HOH A 76 776 86 HOH HOH . G 3 HOH A 77 777 168 HOH HOH . G 3 HOH A 78 778 147 HOH HOH . G 3 HOH A 79 779 85 HOH HOH . G 3 HOH A 80 780 11 HOH HOH . G 3 HOH A 81 781 124 HOH HOH . G 3 HOH A 82 782 64 HOH HOH . G 3 HOH A 83 783 165 HOH HOH . G 3 HOH A 84 784 94 HOH HOH . G 3 HOH A 85 785 38 HOH HOH . G 3 HOH A 86 786 78 HOH HOH . G 3 HOH A 87 787 63 HOH HOH . G 3 HOH A 88 788 61 HOH HOH . G 3 HOH A 89 789 52 HOH HOH . G 3 HOH A 90 790 32 HOH HOH . G 3 HOH A 91 791 157 HOH HOH . G 3 HOH A 92 792 114 HOH HOH . G 3 HOH A 93 793 102 HOH HOH . G 3 HOH A 94 794 56 HOH HOH . G 3 HOH A 95 795 47 HOH HOH . G 3 HOH A 96 796 115 HOH HOH . G 3 HOH A 97 797 81 HOH HOH . G 3 HOH A 98 798 65 HOH HOH . G 3 HOH A 99 799 62 HOH HOH . G 3 HOH A 100 800 8 HOH HOH . G 3 HOH A 101 801 20 HOH HOH . G 3 HOH A 102 802 100 HOH HOH . G 3 HOH A 103 803 172 HOH HOH . G 3 HOH A 104 804 117 HOH HOH . G 3 HOH A 105 805 70 HOH HOH . G 3 HOH A 106 806 27 HOH HOH . G 3 HOH A 107 807 163 HOH HOH . G 3 HOH A 108 808 24 HOH HOH . G 3 HOH A 109 809 170 HOH HOH . G 3 HOH A 110 810 37 HOH HOH . G 3 HOH A 111 811 154 HOH HOH . G 3 HOH A 112 812 88 HOH HOH . G 3 HOH A 113 813 53 HOH HOH . G 3 HOH A 114 814 105 HOH HOH . G 3 HOH A 115 815 71 HOH HOH . G 3 HOH A 116 816 43 HOH HOH . G 3 HOH A 117 817 135 HOH HOH . G 3 HOH A 118 818 158 HOH HOH . G 3 HOH A 119 819 58 HOH HOH . G 3 HOH A 120 820 134 HOH HOH . G 3 HOH A 121 821 156 HOH HOH . H 3 HOH B 1 701 177 HOH HOH . H 3 HOH B 2 702 7 HOH HOH . H 3 HOH B 3 703 122 HOH HOH . H 3 HOH B 4 704 128 HOH HOH . H 3 HOH B 5 705 98 HOH HOH . H 3 HOH B 6 706 26 HOH HOH . H 3 HOH B 7 707 125 HOH HOH . H 3 HOH B 8 708 120 HOH HOH . H 3 HOH B 9 709 25 HOH HOH . H 3 HOH B 10 710 151 HOH HOH . H 3 HOH B 11 711 95 HOH HOH . H 3 HOH B 12 712 148 HOH HOH . H 3 HOH B 13 713 10 HOH HOH . H 3 HOH B 14 714 30 HOH HOH . H 3 HOH B 15 715 107 HOH HOH . H 3 HOH B 16 716 33 HOH HOH . H 3 HOH B 17 717 142 HOH HOH . H 3 HOH B 18 718 28 HOH HOH . H 3 HOH B 19 719 91 HOH HOH . H 3 HOH B 20 720 173 HOH HOH . H 3 HOH B 21 721 92 HOH HOH . H 3 HOH B 22 722 55 HOH HOH . H 3 HOH B 23 723 42 HOH HOH . H 3 HOH B 24 724 110 HOH HOH . H 3 HOH B 25 725 1 HOH HOH . H 3 HOH B 26 726 119 HOH HOH . H 3 HOH B 27 727 29 HOH HOH . H 3 HOH B 28 728 161 HOH HOH . H 3 HOH B 29 729 66 HOH HOH . H 3 HOH B 30 730 87 HOH HOH . H 3 HOH B 31 731 40 HOH HOH . H 3 HOH B 32 732 35 HOH HOH . H 3 HOH B 33 733 166 HOH HOH . H 3 HOH B 34 734 118 HOH HOH . H 3 HOH B 35 735 130 HOH HOH . H 3 HOH B 36 736 152 HOH HOH . H 3 HOH B 37 737 72 HOH HOH . H 3 HOH B 38 738 149 HOH HOH . H 3 HOH B 39 739 41 HOH HOH . H 3 HOH B 40 740 178 HOH HOH . H 3 HOH B 41 741 76 HOH HOH . H 3 HOH B 42 742 96 HOH HOH . H 3 HOH B 43 743 93 HOH HOH . H 3 HOH B 44 744 75 HOH HOH . H 3 HOH B 45 745 69 HOH HOH . H 3 HOH B 46 746 113 HOH HOH . H 3 HOH B 47 747 121 HOH HOH . H 3 HOH B 48 748 171 HOH HOH . H 3 HOH B 49 749 127 HOH HOH . H 3 HOH B 50 750 73 HOH HOH . H 3 HOH B 51 751 106 HOH HOH . H 3 HOH B 52 752 174 HOH HOH . H 3 HOH B 53 753 153 HOH HOH . H 3 HOH B 54 754 164 HOH HOH . H 3 HOH B 55 755 139 HOH HOH . H 3 HOH B 56 756 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 24.353 42.231 19.948 1 92.28 ? P PO4 602 A 1 HETATM 2 O O1 PO4 . . . D 2 24.92 41.115 19.1 1 67.78 ? O1 PO4 602 A 1 HETATM 3 O O2 PO4 . . . D 2 23.337 43.014 19.149 1 61.86 ? O2 PO4 602 A 1 HETATM 4 O O3 PO4 . . . D 2 25.47 43.157 20.373 1 105.95 ? O3 PO4 602 A 1 HETATM 5 O O4 PO4 . . . D 2 23.687 41.643 21.172 1 97.64 ? O4 PO4 602 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #