data_6DDW # _model_server_result.job_id K4GStVNZ3nDAr5O-k8W7qw _model_server_result.datetime_utc '2024-11-13 05:56:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ddw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6DDW # _exptl.entry_id 6DDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DDW _cell.length_a 60.439 _cell.length_b 60.439 _cell.length_c 58.959 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 304 n n PA O2A NDP sing 305 n n PA O5B NDP sing 306 n n PA O3 NDP sing 307 n n O2A HOA2 NDP sing 308 n n O5B C5B NDP sing 309 n n C5B C4B NDP sing 310 n n C5B H51A NDP sing 311 n n C5B H52A NDP sing 312 n n C4B O4B NDP sing 313 n n C4B C3B NDP sing 314 n n C4B H4B NDP sing 315 n n O4B C1B NDP sing 316 n n C3B O3B NDP sing 317 n n C3B C2B NDP sing 318 n n C3B H3B NDP sing 319 n n O3B HO3A NDP sing 320 n n C2B O2B NDP sing 321 n n C2B C1B NDP sing 322 n n C2B H2B NDP sing 323 n n O2B P2B NDP sing 324 n n C1B N9A NDP sing 325 n n C1B H1B NDP sing 326 n n N9A C8A NDP sing 327 n y N9A C4A NDP sing 328 n y C8A N7A NDP doub 329 n y C8A H8A NDP sing 330 n n N7A C5A NDP sing 331 n y C5A C6A NDP sing 332 n y C5A C4A NDP doub 333 n y C6A N6A NDP sing 334 n n C6A N1A NDP doub 335 n y N6A H61A NDP sing 336 n n N6A H62A NDP sing 337 n n N1A C2A NDP sing 338 n y C2A N3A NDP doub 339 n y C2A H2A NDP sing 340 n n N3A C4A NDP sing 341 n y O3 PN NDP sing 342 n n PN O1N NDP doub 343 n n PN O2N NDP sing 344 n n PN O5D NDP sing 345 n n O2N H21N NDP sing 346 n n O5D C5D NDP sing 347 n n C5D C4D NDP sing 348 n n C5D H51N NDP sing 349 n n C5D H52N NDP sing 350 n n C4D O4D NDP sing 351 n n C4D C3D NDP sing 352 n n C4D H4D NDP sing 353 n n O4D C1D NDP sing 354 n n C3D O3D NDP sing 355 n n C3D C2D NDP sing 356 n n C3D H3D NDP sing 357 n n O3D HO3N NDP sing 358 n n C2D O2D NDP sing 359 n n C2D C1D NDP sing 360 n n C2D H2D NDP sing 361 n n O2D HO2N NDP sing 362 n n C1D N1N NDP sing 363 n n C1D H1D NDP sing 364 n n N1N C2N NDP sing 365 n n N1N C6N NDP sing 366 n n C2N C3N NDP doub 367 n n C2N H2N NDP sing 368 n n C3N C7N NDP sing 369 n n C3N C4N NDP sing 370 n n C7N O7N NDP doub 371 n n C7N N7N NDP sing 372 n n N7N H71N NDP sing 373 n n N7N H72N NDP sing 374 n n C4N C5N NDP sing 375 n n C4N H41N NDP sing 376 n n C4N H42N NDP sing 377 n n C5N C6N NDP doub 378 n n C5N H5N NDP sing 379 n n C6N H6N NDP sing 380 n n P2B O1X NDP doub 381 n n P2B O2X NDP sing 382 n n P2B O3X NDP sing 383 n n O2X HOP2 NDP sing 384 n n O3X HOP3 NDP sing 385 n n # _atom_sites.entry_id 6DDW _atom_sites.fract_transf_matrix[1][1] 0.016546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 201 160 NDP NDP . C 3 G7D A 1 202 161 G7D DRG . D 4 GOL A 1 203 162 GOL GOL . E 4 GOL A 1 204 163 GOL GOL . F 4 GOL A 1 205 164 GOL GOL . G 4 GOL A 1 206 165 GOL GOL . H 5 SO4 A 1 207 166 SO4 SO4 . I 6 HOH A 1 301 235 HOH HOH . I 6 HOH A 2 302 292 HOH HOH . I 6 HOH A 3 303 295 HOH HOH . I 6 HOH A 4 304 299 HOH HOH . I 6 HOH A 5 305 208 HOH HOH . I 6 HOH A 6 306 251 HOH HOH . I 6 HOH A 7 307 260 HOH HOH . I 6 HOH A 8 308 279 HOH HOH . I 6 HOH A 9 309 238 HOH HOH . I 6 HOH A 10 310 229 HOH HOH . I 6 HOH A 11 311 197 HOH HOH . I 6 HOH A 12 312 239 HOH HOH . I 6 HOH A 13 313 176 HOH HOH . I 6 HOH A 14 314 177 HOH HOH . I 6 HOH A 15 315 290 HOH HOH . I 6 HOH A 16 316 256 HOH HOH . I 6 HOH A 17 317 226 HOH HOH . I 6 HOH A 18 318 225 HOH HOH . I 6 HOH A 19 319 168 HOH HOH . I 6 HOH A 20 320 212 HOH HOH . I 6 HOH A 21 321 230 HOH HOH . I 6 HOH A 22 322 300 HOH HOH . I 6 HOH A 23 323 269 HOH HOH . I 6 HOH A 24 324 191 HOH HOH . I 6 HOH A 25 325 170 HOH HOH . I 6 HOH A 26 326 205 HOH HOH . I 6 HOH A 27 327 245 HOH HOH . I 6 HOH A 28 328 224 HOH HOH . I 6 HOH A 29 329 221 HOH HOH . I 6 HOH A 30 330 282 HOH HOH . I 6 HOH A 31 331 267 HOH HOH . I 6 HOH A 32 332 180 HOH HOH . I 6 HOH A 33 333 241 HOH HOH . I 6 HOH A 34 334 291 HOH HOH . I 6 HOH A 35 335 266 HOH HOH . I 6 HOH A 36 336 175 HOH HOH . I 6 HOH A 37 337 178 HOH HOH . I 6 HOH A 38 338 172 HOH HOH . I 6 HOH A 39 339 209 HOH HOH . I 6 HOH A 40 340 244 HOH HOH . I 6 HOH A 41 341 193 HOH HOH . I 6 HOH A 42 342 206 HOH HOH . I 6 HOH A 43 343 186 HOH HOH . I 6 HOH A 44 344 243 HOH HOH . I 6 HOH A 45 345 192 HOH HOH . I 6 HOH A 46 346 261 HOH HOH . I 6 HOH A 47 347 296 HOH HOH . I 6 HOH A 48 348 203 HOH HOH . I 6 HOH A 49 349 289 HOH HOH . I 6 HOH A 50 350 217 HOH HOH . I 6 HOH A 51 351 281 HOH HOH . I 6 HOH A 52 352 278 HOH HOH . I 6 HOH A 53 353 220 HOH HOH . I 6 HOH A 54 354 184 HOH HOH . I 6 HOH A 55 355 173 HOH HOH . I 6 HOH A 56 356 288 HOH HOH . I 6 HOH A 57 357 200 HOH HOH . I 6 HOH A 58 358 181 HOH HOH . I 6 HOH A 59 359 174 HOH HOH . I 6 HOH A 60 360 283 HOH HOH . I 6 HOH A 61 361 294 HOH HOH . I 6 HOH A 62 362 254 HOH HOH . I 6 HOH A 63 363 171 HOH HOH . I 6 HOH A 64 364 204 HOH HOH . I 6 HOH A 65 365 188 HOH HOH . I 6 HOH A 66 366 280 HOH HOH . I 6 HOH A 67 367 222 HOH HOH . I 6 HOH A 68 368 202 HOH HOH . I 6 HOH A 69 369 264 HOH HOH . I 6 HOH A 70 370 187 HOH HOH . I 6 HOH A 71 371 195 HOH HOH . I 6 HOH A 72 372 262 HOH HOH . I 6 HOH A 73 373 182 HOH HOH . I 6 HOH A 74 374 216 HOH HOH . I 6 HOH A 75 375 277 HOH HOH . I 6 HOH A 76 376 285 HOH HOH . I 6 HOH A 77 377 276 HOH HOH . I 6 HOH A 78 378 210 HOH HOH . I 6 HOH A 79 379 297 HOH HOH . I 6 HOH A 80 380 259 HOH HOH . I 6 HOH A 81 381 240 HOH HOH . I 6 HOH A 82 382 179 HOH HOH . I 6 HOH A 83 383 169 HOH HOH . I 6 HOH A 84 384 284 HOH HOH . I 6 HOH A 85 385 246 HOH HOH . I 6 HOH A 86 386 247 HOH HOH . I 6 HOH A 87 387 248 HOH HOH . I 6 HOH A 88 388 214 HOH HOH . I 6 HOH A 89 389 196 HOH HOH . I 6 HOH A 90 390 274 HOH HOH . I 6 HOH A 91 391 207 HOH HOH . I 6 HOH A 92 392 189 HOH HOH . I 6 HOH A 93 393 233 HOH HOH . I 6 HOH A 94 394 232 HOH HOH . I 6 HOH A 95 395 252 HOH HOH . I 6 HOH A 96 396 234 HOH HOH . I 6 HOH A 97 397 167 HOH HOH . I 6 HOH A 98 398 301 HOH HOH . I 6 HOH A 99 399 198 HOH HOH . I 6 HOH A 100 400 265 HOH HOH . I 6 HOH A 101 401 211 HOH HOH . I 6 HOH A 102 402 236 HOH HOH . I 6 HOH A 103 403 253 HOH HOH . I 6 HOH A 104 404 223 HOH HOH . I 6 HOH A 105 405 219 HOH HOH . I 6 HOH A 106 406 218 HOH HOH . I 6 HOH A 107 407 231 HOH HOH . I 6 HOH A 108 408 183 HOH HOH . I 6 HOH A 109 409 255 HOH HOH . I 6 HOH A 110 410 275 HOH HOH . I 6 HOH A 111 411 199 HOH HOH . I 6 HOH A 112 412 237 HOH HOH . I 6 HOH A 113 413 185 HOH HOH . I 6 HOH A 114 414 268 HOH HOH . I 6 HOH A 115 415 298 HOH HOH . I 6 HOH A 116 416 250 HOH HOH . I 6 HOH A 117 417 215 HOH HOH . I 6 HOH A 118 418 293 HOH HOH . I 6 HOH A 119 419 287 HOH HOH . I 6 HOH A 120 420 194 HOH HOH . I 6 HOH A 121 421 249 HOH HOH . I 6 HOH A 122 422 228 HOH HOH . I 6 HOH A 123 423 201 HOH HOH . I 6 HOH A 124 424 286 HOH HOH . I 6 HOH A 125 425 227 HOH HOH . I 6 HOH A 126 426 257 HOH HOH . I 6 HOH A 127 427 263 HOH HOH . I 6 HOH A 128 428 242 HOH HOH . I 6 HOH A 129 429 270 HOH HOH . I 6 HOH A 130 430 272 HOH HOH . I 6 HOH A 131 431 273 HOH HOH . I 6 HOH A 132 432 213 HOH HOH . I 6 HOH A 133 433 190 HOH HOH . I 6 HOH A 134 434 303 HOH HOH . I 6 HOH A 135 435 302 HOH HOH . I 6 HOH A 136 436 258 HOH HOH . I 6 HOH A 137 437 271 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 18.774 13.389 8.506 1 19.23 ? PA NDP 201 A 1 HETATM 2 O O1A NDP . . . B 2 18.361 14.178 7.338 1 19.3 ? O1A NDP 201 A 1 HETATM 3 O O2A NDP . . . B 2 19.806 12.325 8.363 1 18.83 ? O2A NDP 201 A 1 HETATM 4 O O5B NDP . . . B 2 19.288 14.326 9.749 1 20.49 ? O5B NDP 201 A 1 HETATM 5 C C5B NDP . . . B 2 18.307 15.28 10.141 1 20.76 ? C5B NDP 201 A 1 HETATM 6 C C4B NDP . . . B 2 19.046 16.159 11.164 1 21.53 ? C4B NDP 201 A 1 HETATM 7 O O4B NDP . . . B 2 19.905 17.036 10.449 1 20.82 ? O4B NDP 201 A 1 HETATM 8 C C3B NDP . . . B 2 18.131 17.038 12.043 1 22.18 ? C3B NDP 201 A 1 HETATM 9 O O3B NDP . . . B 2 17.666 16.316 13.164 1 23.71 ? O3B NDP 201 A 1 HETATM 10 C C2B NDP . . . B 2 19.185 18.115 12.477 1 23.62 ? C2B NDP 201 A 1 HETATM 11 O O2B NDP . . . B 2 20.159 17.65 13.257 1 25.11 ? O2B NDP 201 A 1 HETATM 12 C C1B NDP . . . B 2 19.909 18.318 11.119 1 23.36 ? C1B NDP 201 A 1 HETATM 13 N N9A NDP . . . B 2 19.298 19.307 10.275 1 22.7 ? N9A NDP 201 A 1 HETATM 14 C C8A NDP . . . B 2 18.16 19.195 9.466 1 24.75 ? C8A NDP 201 A 1 HETATM 15 N N7A NDP . . . B 2 17.865 20.323 8.81 1 25.32 ? N7A NDP 201 A 1 HETATM 16 C C5A NDP . . . B 2 18.858 21.216 9.226 1 24.91 ? C5A NDP 201 A 1 HETATM 17 C C6A NDP . . . B 2 19.108 22.561 8.913 1 28.04 ? C6A NDP 201 A 1 HETATM 18 N N6A NDP . . . B 2 18.29 23.244 8.033 1 31.02 ? N6A NDP 201 A 1 HETATM 19 N N1A NDP . . . B 2 20.178 23.21 9.462 1 28.75 ? N1A NDP 201 A 1 HETATM 20 C C2A NDP . . . B 2 20.953 22.475 10.33 1 27.32 ? C2A NDP 201 A 1 HETATM 21 N N3A NDP . . . B 2 20.845 21.197 10.731 1 24.93 ? N3A NDP 201 A 1 HETATM 22 C C4A NDP . . . B 2 19.757 20.589 10.147 1 25.17 ? C4A NDP 201 A 1 HETATM 23 O O3 NDP . . . B 2 17.422 12.727 9.29 1 19.88 ? O3 NDP 201 A 1 HETATM 24 P PN NDP . . . B 2 16.22 11.9 8.574 1 20.65 ? PN NDP 201 A 1 HETATM 25 O O1N NDP . . . B 2 15.496 11.334 9.728 1 21.74 ? O1N NDP 201 A 1 HETATM 26 O O2N NDP . . . B 2 15.529 12.678 7.484 1 19.85 ? O2N NDP 201 A 1 HETATM 27 O O5D NDP . . . B 2 16.946 10.637 7.694 1 20.17 ? O5D NDP 201 A 1 HETATM 28 C C5D NDP . . . B 2 17.519 9.617 8.475 1 19.99 ? C5D NDP 201 A 1 HETATM 29 C C4D NDP . . . B 2 17.046 8.291 7.884 1 20.54 ? C4D NDP 201 A 1 HETATM 30 O O4D NDP . . . B 2 17.455 8.167 6.504 1 20.08 ? O4D NDP 201 A 1 HETATM 31 C C3D NDP . . . B 2 17.65 7.067 8.634 1 21.08 ? C3D NDP 201 A 1 HETATM 32 O O3D NDP . . . B 2 16.645 6.087 8.699 1 22.21 ? O3D NDP 201 A 1 HETATM 33 C C2D NDP . . . B 2 18.776 6.623 7.694 1 20.64 ? C2D NDP 201 A 1 HETATM 34 O O2D NDP . . . B 2 19.092 5.254 7.783 1 21.9 ? O2D NDP 201 A 1 HETATM 35 C C1D NDP . . . B 2 18.103 6.9 6.334 1 20.09 ? C1D NDP 201 A 1 HETATM 36 N N1N NDP . . . B 2 19.058 7.061 5.234 1 19.24 ? N1N NDP 201 A 1 HETATM 37 C C2N NDP . . . B 2 18.902 6.291 4.096 1 19.39 ? C2N NDP 201 A 1 HETATM 38 C C3N NDP . . . B 2 19.682 6.485 3.008 1 19.88 ? C3N NDP 201 A 1 HETATM 39 C C7N NDP . . . B 2 19.479 5.677 1.826 1 20.17 ? C7N NDP 201 A 1 HETATM 40 O O7N NDP . . . B 2 20.077 5.915 0.764 1 20.3 ? O7N NDP 201 A 1 HETATM 41 N N7N NDP . . . B 2 18.606 4.61 1.879 1 19.05 ? N7N NDP 201 A 1 HETATM 42 C C4N NDP . . . B 2 20.729 7.505 2.973 1 19.84 ? C4N NDP 201 A 1 HETATM 43 C C5N NDP . . . B 2 20.845 8.267 4.24 1 21.37 ? C5N NDP 201 A 1 HETATM 44 C C6N NDP . . . B 2 20.057 8.053 5.29 1 18.48 ? C6N NDP 201 A 1 HETATM 45 P P2B NDP . . . B 2 20.006 17.974 15.032 1 26.59 ? P2B NDP 201 A 1 HETATM 46 O O1X NDP . . . B 2 18.755 17.188 15.279 1 26.42 ? O1X NDP 201 A 1 HETATM 47 O O2X NDP . . . B 2 21.303 17.388 15.6 1 27.64 ? O2X NDP 201 A 1 HETATM 48 O O3X NDP . . . B 2 19.878 19.459 15.036 1 26.5 ? O3X NDP 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #