data_6DDW # _model_server_result.job_id 5cvE_hH0CanePFmm-haD7w _model_server_result.datetime_utc '2024-11-13 06:04:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ddw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6DDW # _exptl.entry_id 6DDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.397 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-(4-{[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino}-2-hydroxybenzene-1-carbonyl)-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DDW _cell.length_a 60.439 _cell.length_b 60.439 _cell.length_c 58.959 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H19 N7 O7' _chem_comp.formula_weight 457.397 _chem_comp.id G7D _chem_comp.mon_nstd_flag . _chem_comp.name 'N-(4-{[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino}-2-hydroxybenzene-1-carbonyl)-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C2 G7D sing 83 n n C2 N1 G7D doub 84 n n C2 N3 G7D sing 85 n n N1 C8A G7D sing 86 n n N3 C4 G7D sing 87 n n OE1 CD G7D doub 88 n n C8A N8 G7D doub 89 n y C8A C4A G7D sing 90 n y C4 C4A G7D sing 91 n n C4 O4 G7D doub 92 n n N8 C7 G7D sing 93 n y CD CG G7D sing 94 n n CD OE2 G7D sing 95 n n C4A N5 G7D doub 96 n y CG CB G7D sing 97 n n O C G7D doub 98 n n C7 C6 G7D doub 99 n y N5 C6 G7D sing 100 n y C OXT G7D sing 101 n n C CA G7D sing 102 n n C6 C9 G7D sing 103 n n CB CA G7D sing 104 n n CA N G7D sing 105 n n N CAT G7D sing 106 n n CAQ CAP G7D doub 107 n y CAQ CAR G7D sing 108 n y CAP CAM G7D sing 109 n y C9 N10 G7D sing 110 n n CAT CAR G7D sing 111 n n CAT OAU G7D doub 112 n n CAR CAN G7D doub 113 n y CAM N10 G7D sing 114 n n CAM CAO G7D doub 115 n y CAN CAO G7D sing 116 n y CAN OAS G7D sing 117 n n C7 H1 G7D sing 118 n n C9 H2 G7D sing 119 n n C9 H3 G7D sing 120 n n N2 H4 G7D sing 121 n n N2 H5 G7D sing 122 n n N3 H6 G7D sing 123 n n OE2 H7 G7D sing 124 n n CG H8 G7D sing 125 n n CG H9 G7D sing 126 n n CB H10 G7D sing 127 n n CB H11 G7D sing 128 n n CA H12 G7D sing 129 n n OXT H13 G7D sing 130 n n N H14 G7D sing 131 n n CAO H15 G7D sing 132 n n OAS H16 G7D sing 133 n n CAQ H17 G7D sing 134 n n CAP H18 G7D sing 135 n n N10 H19 G7D sing 136 n n # _atom_sites.entry_id 6DDW _atom_sites.fract_transf_matrix[1][1] 0.016546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 201 160 NDP NDP . C 3 G7D A 1 202 161 G7D DRG . D 4 GOL A 1 203 162 GOL GOL . E 4 GOL A 1 204 163 GOL GOL . F 4 GOL A 1 205 164 GOL GOL . G 4 GOL A 1 206 165 GOL GOL . H 5 SO4 A 1 207 166 SO4 SO4 . I 6 HOH A 1 301 235 HOH HOH . I 6 HOH A 2 302 292 HOH HOH . I 6 HOH A 3 303 295 HOH HOH . I 6 HOH A 4 304 299 HOH HOH . I 6 HOH A 5 305 208 HOH HOH . I 6 HOH A 6 306 251 HOH HOH . I 6 HOH A 7 307 260 HOH HOH . I 6 HOH A 8 308 279 HOH HOH . I 6 HOH A 9 309 238 HOH HOH . I 6 HOH A 10 310 229 HOH HOH . I 6 HOH A 11 311 197 HOH HOH . I 6 HOH A 12 312 239 HOH HOH . I 6 HOH A 13 313 176 HOH HOH . I 6 HOH A 14 314 177 HOH HOH . I 6 HOH A 15 315 290 HOH HOH . I 6 HOH A 16 316 256 HOH HOH . I 6 HOH A 17 317 226 HOH HOH . I 6 HOH A 18 318 225 HOH HOH . I 6 HOH A 19 319 168 HOH HOH . I 6 HOH A 20 320 212 HOH HOH . I 6 HOH A 21 321 230 HOH HOH . I 6 HOH A 22 322 300 HOH HOH . I 6 HOH A 23 323 269 HOH HOH . I 6 HOH A 24 324 191 HOH HOH . I 6 HOH A 25 325 170 HOH HOH . I 6 HOH A 26 326 205 HOH HOH . I 6 HOH A 27 327 245 HOH HOH . I 6 HOH A 28 328 224 HOH HOH . I 6 HOH A 29 329 221 HOH HOH . I 6 HOH A 30 330 282 HOH HOH . I 6 HOH A 31 331 267 HOH HOH . I 6 HOH A 32 332 180 HOH HOH . I 6 HOH A 33 333 241 HOH HOH . I 6 HOH A 34 334 291 HOH HOH . I 6 HOH A 35 335 266 HOH HOH . I 6 HOH A 36 336 175 HOH HOH . I 6 HOH A 37 337 178 HOH HOH . I 6 HOH A 38 338 172 HOH HOH . I 6 HOH A 39 339 209 HOH HOH . I 6 HOH A 40 340 244 HOH HOH . I 6 HOH A 41 341 193 HOH HOH . I 6 HOH A 42 342 206 HOH HOH . I 6 HOH A 43 343 186 HOH HOH . I 6 HOH A 44 344 243 HOH HOH . I 6 HOH A 45 345 192 HOH HOH . I 6 HOH A 46 346 261 HOH HOH . I 6 HOH A 47 347 296 HOH HOH . I 6 HOH A 48 348 203 HOH HOH . I 6 HOH A 49 349 289 HOH HOH . I 6 HOH A 50 350 217 HOH HOH . I 6 HOH A 51 351 281 HOH HOH . I 6 HOH A 52 352 278 HOH HOH . I 6 HOH A 53 353 220 HOH HOH . I 6 HOH A 54 354 184 HOH HOH . I 6 HOH A 55 355 173 HOH HOH . I 6 HOH A 56 356 288 HOH HOH . I 6 HOH A 57 357 200 HOH HOH . I 6 HOH A 58 358 181 HOH HOH . I 6 HOH A 59 359 174 HOH HOH . I 6 HOH A 60 360 283 HOH HOH . I 6 HOH A 61 361 294 HOH HOH . I 6 HOH A 62 362 254 HOH HOH . I 6 HOH A 63 363 171 HOH HOH . I 6 HOH A 64 364 204 HOH HOH . I 6 HOH A 65 365 188 HOH HOH . I 6 HOH A 66 366 280 HOH HOH . I 6 HOH A 67 367 222 HOH HOH . I 6 HOH A 68 368 202 HOH HOH . I 6 HOH A 69 369 264 HOH HOH . I 6 HOH A 70 370 187 HOH HOH . I 6 HOH A 71 371 195 HOH HOH . I 6 HOH A 72 372 262 HOH HOH . I 6 HOH A 73 373 182 HOH HOH . I 6 HOH A 74 374 216 HOH HOH . I 6 HOH A 75 375 277 HOH HOH . I 6 HOH A 76 376 285 HOH HOH . I 6 HOH A 77 377 276 HOH HOH . I 6 HOH A 78 378 210 HOH HOH . I 6 HOH A 79 379 297 HOH HOH . I 6 HOH A 80 380 259 HOH HOH . I 6 HOH A 81 381 240 HOH HOH . I 6 HOH A 82 382 179 HOH HOH . I 6 HOH A 83 383 169 HOH HOH . I 6 HOH A 84 384 284 HOH HOH . I 6 HOH A 85 385 246 HOH HOH . I 6 HOH A 86 386 247 HOH HOH . I 6 HOH A 87 387 248 HOH HOH . I 6 HOH A 88 388 214 HOH HOH . I 6 HOH A 89 389 196 HOH HOH . I 6 HOH A 90 390 274 HOH HOH . I 6 HOH A 91 391 207 HOH HOH . I 6 HOH A 92 392 189 HOH HOH . I 6 HOH A 93 393 233 HOH HOH . I 6 HOH A 94 394 232 HOH HOH . I 6 HOH A 95 395 252 HOH HOH . I 6 HOH A 96 396 234 HOH HOH . I 6 HOH A 97 397 167 HOH HOH . I 6 HOH A 98 398 301 HOH HOH . I 6 HOH A 99 399 198 HOH HOH . I 6 HOH A 100 400 265 HOH HOH . I 6 HOH A 101 401 211 HOH HOH . I 6 HOH A 102 402 236 HOH HOH . I 6 HOH A 103 403 253 HOH HOH . I 6 HOH A 104 404 223 HOH HOH . I 6 HOH A 105 405 219 HOH HOH . I 6 HOH A 106 406 218 HOH HOH . I 6 HOH A 107 407 231 HOH HOH . I 6 HOH A 108 408 183 HOH HOH . I 6 HOH A 109 409 255 HOH HOH . I 6 HOH A 110 410 275 HOH HOH . I 6 HOH A 111 411 199 HOH HOH . I 6 HOH A 112 412 237 HOH HOH . I 6 HOH A 113 413 185 HOH HOH . I 6 HOH A 114 414 268 HOH HOH . I 6 HOH A 115 415 298 HOH HOH . I 6 HOH A 116 416 250 HOH HOH . I 6 HOH A 117 417 215 HOH HOH . I 6 HOH A 118 418 293 HOH HOH . I 6 HOH A 119 419 287 HOH HOH . I 6 HOH A 120 420 194 HOH HOH . I 6 HOH A 121 421 249 HOH HOH . I 6 HOH A 122 422 228 HOH HOH . I 6 HOH A 123 423 201 HOH HOH . I 6 HOH A 124 424 286 HOH HOH . I 6 HOH A 125 425 227 HOH HOH . I 6 HOH A 126 426 257 HOH HOH . I 6 HOH A 127 427 263 HOH HOH . I 6 HOH A 128 428 242 HOH HOH . I 6 HOH A 129 429 270 HOH HOH . I 6 HOH A 130 430 272 HOH HOH . I 6 HOH A 131 431 273 HOH HOH . I 6 HOH A 132 432 213 HOH HOH . I 6 HOH A 133 433 190 HOH HOH . I 6 HOH A 134 434 303 HOH HOH . I 6 HOH A 135 435 302 HOH HOH . I 6 HOH A 136 436 258 HOH HOH . I 6 HOH A 137 437 271 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 G7D . . . C 3 23.117 3.347 0.572 1 23.82 ? C4 G7D 202 A 1 HETATM 2 C C6 G7D . . . C 3 23.626 5.983 2.975 1 23.58 ? C6 G7D 202 A 1 HETATM 3 C C7 G7D . . . C 3 23.729 7.082 2.137 1 22.54 ? C7 G7D 202 A 1 HETATM 4 C C9 G7D . . . C 3 23.72 6.187 4.359 1 26.65 ? C9 G7D 202 A 1 HETATM 5 N N1 G7D . . . C 3 23.357 5.567 -1.063 1 19.92 ? N1 G7D 202 A 1 HETATM 6 N N2 G7D . . . C 3 23.096 4.225 -2.934 1 21.62 ? N2 G7D 202 A 1 HETATM 7 N N3 G7D . . . C 3 23.053 3.221 -0.806 1 22.6 ? N3 G7D 202 A 1 HETATM 8 O OE1 G7D . . . C 3 31.604 -1.573 0.108 1 37.2 ? OE1 G7D 202 A 1 HETATM 9 C CD G7D . . . C 3 30.931 -1.201 1.098 1 34.38 ? CD G7D 202 A 1 HETATM 10 O OE2 G7D . . . C 3 30.228 -1.935 1.82 1 39.62 ? OE2 G7D 202 A 1 HETATM 11 C CG G7D . . . C 3 30.984 0.29 1.476 1 31.6 ? CG G7D 202 A 1 HETATM 12 C CB G7D . . . C 3 31.062 0.374 2.997 1 31.39 ? CB G7D 202 A 1 HETATM 13 C CA G7D . . . C 3 31.037 1.819 3.524 1 27.56 ? CA G7D 202 A 1 HETATM 14 C C G7D . . . C 3 31.889 2.8 2.679 1 27.1 ? C G7D 202 A 1 HETATM 15 O OXT G7D . . . C 3 33.129 2.745 2.802 1 27.68 ? OXT G7D 202 A 1 HETATM 16 O O G7D . . . C 3 31.272 3.64 1.982 1 24.38 ? O G7D 202 A 1 HETATM 17 N N G7D . . . C 3 29.677 2.372 3.665 1 27.61 ? N G7D 202 A 1 HETATM 18 C CAT G7D . . . C 3 28.837 2.035 4.654 1 26.76 ? CAT G7D 202 A 1 HETATM 19 O OAU G7D . . . C 3 29.119 1.157 5.471 1 28.72 ? OAU G7D 202 A 1 HETATM 20 C CAR G7D . . . C 3 27.642 2.772 4.739 1 27.59 ? CAR G7D 202 A 1 HETATM 21 C CAN G7D . . . C 3 26.661 2.456 5.678 1 27.7 ? CAN G7D 202 A 1 HETATM 22 C CAO G7D . . . C 3 25.486 3.192 5.789 1 28.9 ? CAO G7D 202 A 1 HETATM 23 O OAS G7D . . . C 3 26.916 1.365 6.456 1 32.24 ? OAS G7D 202 A 1 HETATM 24 C CAQ G7D . . . C 3 27.412 3.899 3.941 1 26 ? CAQ G7D 202 A 1 HETATM 25 C CAP G7D . . . C 3 26.236 4.651 4.042 1 25.98 ? CAP G7D 202 A 1 HETATM 26 C CAM G7D . . . C 3 25.25 4.296 4.973 1 26.3 ? CAM G7D 202 A 1 HETATM 27 N N10 G7D . . . C 3 24.105 4.98 5.114 1 26.61 ? N10 G7D 202 A 1 HETATM 28 N N5 G7D . . . C 3 23.423 4.766 2.448 1 23.93 ? N5 G7D 202 A 1 HETATM 29 C C4A G7D . . . C 3 23.336 4.611 1.115 1 22.88 ? C4A G7D 202 A 1 HETATM 30 O O4 G7D . . . C 3 22.995 2.342 1.278 1 27.34 ? O4 G7D 202 A 1 HETATM 31 C C2 G7D . . . C 3 23.161 4.359 -1.612 1 20.28 ? C2 G7D 202 A 1 HETATM 32 C C8A G7D . . . C 3 23.443 5.705 0.263 1 20.24 ? C8A G7D 202 A 1 HETATM 33 N N8 G7D . . . C 3 23.627 6.929 0.763 1 20.66 ? N8 G7D 202 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 33 #