data_6DDW # _model_server_result.job_id 25m2K4Ywml_CTcNkeNMc3g _model_server_result.datetime_utc '2024-11-13 05:56:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ddw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 6DDW # _exptl.entry_id 6DDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DDW _cell.length_a 60.439 _cell.length_b 60.439 _cell.length_c 58.959 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 6DDW _atom_sites.fract_transf_matrix[1][1] 0.016546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 201 160 NDP NDP . C 3 G7D A 1 202 161 G7D DRG . D 4 GOL A 1 203 162 GOL GOL . E 4 GOL A 1 204 163 GOL GOL . F 4 GOL A 1 205 164 GOL GOL . G 4 GOL A 1 206 165 GOL GOL . H 5 SO4 A 1 207 166 SO4 SO4 . I 6 HOH A 1 301 235 HOH HOH . I 6 HOH A 2 302 292 HOH HOH . I 6 HOH A 3 303 295 HOH HOH . I 6 HOH A 4 304 299 HOH HOH . I 6 HOH A 5 305 208 HOH HOH . I 6 HOH A 6 306 251 HOH HOH . I 6 HOH A 7 307 260 HOH HOH . I 6 HOH A 8 308 279 HOH HOH . I 6 HOH A 9 309 238 HOH HOH . I 6 HOH A 10 310 229 HOH HOH . I 6 HOH A 11 311 197 HOH HOH . I 6 HOH A 12 312 239 HOH HOH . I 6 HOH A 13 313 176 HOH HOH . I 6 HOH A 14 314 177 HOH HOH . I 6 HOH A 15 315 290 HOH HOH . I 6 HOH A 16 316 256 HOH HOH . I 6 HOH A 17 317 226 HOH HOH . I 6 HOH A 18 318 225 HOH HOH . I 6 HOH A 19 319 168 HOH HOH . I 6 HOH A 20 320 212 HOH HOH . I 6 HOH A 21 321 230 HOH HOH . I 6 HOH A 22 322 300 HOH HOH . I 6 HOH A 23 323 269 HOH HOH . I 6 HOH A 24 324 191 HOH HOH . I 6 HOH A 25 325 170 HOH HOH . I 6 HOH A 26 326 205 HOH HOH . I 6 HOH A 27 327 245 HOH HOH . I 6 HOH A 28 328 224 HOH HOH . I 6 HOH A 29 329 221 HOH HOH . I 6 HOH A 30 330 282 HOH HOH . I 6 HOH A 31 331 267 HOH HOH . I 6 HOH A 32 332 180 HOH HOH . I 6 HOH A 33 333 241 HOH HOH . I 6 HOH A 34 334 291 HOH HOH . I 6 HOH A 35 335 266 HOH HOH . I 6 HOH A 36 336 175 HOH HOH . I 6 HOH A 37 337 178 HOH HOH . I 6 HOH A 38 338 172 HOH HOH . I 6 HOH A 39 339 209 HOH HOH . I 6 HOH A 40 340 244 HOH HOH . I 6 HOH A 41 341 193 HOH HOH . I 6 HOH A 42 342 206 HOH HOH . I 6 HOH A 43 343 186 HOH HOH . I 6 HOH A 44 344 243 HOH HOH . I 6 HOH A 45 345 192 HOH HOH . I 6 HOH A 46 346 261 HOH HOH . I 6 HOH A 47 347 296 HOH HOH . I 6 HOH A 48 348 203 HOH HOH . I 6 HOH A 49 349 289 HOH HOH . I 6 HOH A 50 350 217 HOH HOH . I 6 HOH A 51 351 281 HOH HOH . I 6 HOH A 52 352 278 HOH HOH . I 6 HOH A 53 353 220 HOH HOH . I 6 HOH A 54 354 184 HOH HOH . I 6 HOH A 55 355 173 HOH HOH . I 6 HOH A 56 356 288 HOH HOH . I 6 HOH A 57 357 200 HOH HOH . I 6 HOH A 58 358 181 HOH HOH . I 6 HOH A 59 359 174 HOH HOH . I 6 HOH A 60 360 283 HOH HOH . I 6 HOH A 61 361 294 HOH HOH . I 6 HOH A 62 362 254 HOH HOH . I 6 HOH A 63 363 171 HOH HOH . I 6 HOH A 64 364 204 HOH HOH . I 6 HOH A 65 365 188 HOH HOH . I 6 HOH A 66 366 280 HOH HOH . I 6 HOH A 67 367 222 HOH HOH . I 6 HOH A 68 368 202 HOH HOH . I 6 HOH A 69 369 264 HOH HOH . I 6 HOH A 70 370 187 HOH HOH . I 6 HOH A 71 371 195 HOH HOH . I 6 HOH A 72 372 262 HOH HOH . I 6 HOH A 73 373 182 HOH HOH . I 6 HOH A 74 374 216 HOH HOH . I 6 HOH A 75 375 277 HOH HOH . I 6 HOH A 76 376 285 HOH HOH . I 6 HOH A 77 377 276 HOH HOH . I 6 HOH A 78 378 210 HOH HOH . I 6 HOH A 79 379 297 HOH HOH . I 6 HOH A 80 380 259 HOH HOH . I 6 HOH A 81 381 240 HOH HOH . I 6 HOH A 82 382 179 HOH HOH . I 6 HOH A 83 383 169 HOH HOH . I 6 HOH A 84 384 284 HOH HOH . I 6 HOH A 85 385 246 HOH HOH . I 6 HOH A 86 386 247 HOH HOH . I 6 HOH A 87 387 248 HOH HOH . I 6 HOH A 88 388 214 HOH HOH . I 6 HOH A 89 389 196 HOH HOH . I 6 HOH A 90 390 274 HOH HOH . I 6 HOH A 91 391 207 HOH HOH . I 6 HOH A 92 392 189 HOH HOH . I 6 HOH A 93 393 233 HOH HOH . I 6 HOH A 94 394 232 HOH HOH . I 6 HOH A 95 395 252 HOH HOH . I 6 HOH A 96 396 234 HOH HOH . I 6 HOH A 97 397 167 HOH HOH . I 6 HOH A 98 398 301 HOH HOH . I 6 HOH A 99 399 198 HOH HOH . I 6 HOH A 100 400 265 HOH HOH . I 6 HOH A 101 401 211 HOH HOH . I 6 HOH A 102 402 236 HOH HOH . I 6 HOH A 103 403 253 HOH HOH . I 6 HOH A 104 404 223 HOH HOH . I 6 HOH A 105 405 219 HOH HOH . I 6 HOH A 106 406 218 HOH HOH . I 6 HOH A 107 407 231 HOH HOH . I 6 HOH A 108 408 183 HOH HOH . I 6 HOH A 109 409 255 HOH HOH . I 6 HOH A 110 410 275 HOH HOH . I 6 HOH A 111 411 199 HOH HOH . I 6 HOH A 112 412 237 HOH HOH . I 6 HOH A 113 413 185 HOH HOH . I 6 HOH A 114 414 268 HOH HOH . I 6 HOH A 115 415 298 HOH HOH . I 6 HOH A 116 416 250 HOH HOH . I 6 HOH A 117 417 215 HOH HOH . I 6 HOH A 118 418 293 HOH HOH . I 6 HOH A 119 419 287 HOH HOH . I 6 HOH A 120 420 194 HOH HOH . I 6 HOH A 121 421 249 HOH HOH . I 6 HOH A 122 422 228 HOH HOH . I 6 HOH A 123 423 201 HOH HOH . I 6 HOH A 124 424 286 HOH HOH . I 6 HOH A 125 425 227 HOH HOH . I 6 HOH A 126 426 257 HOH HOH . I 6 HOH A 127 427 263 HOH HOH . I 6 HOH A 128 428 242 HOH HOH . I 6 HOH A 129 429 270 HOH HOH . I 6 HOH A 130 430 272 HOH HOH . I 6 HOH A 131 431 273 HOH HOH . I 6 HOH A 132 432 213 HOH HOH . I 6 HOH A 133 433 190 HOH HOH . I 6 HOH A 134 434 303 HOH HOH . I 6 HOH A 135 435 302 HOH HOH . I 6 HOH A 136 436 258 HOH HOH . I 6 HOH A 137 437 271 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 0.07 9.48 -1.531 1 41.66 ? C1 GOL 205 A 1 HETATM 2 O O1 GOL . . . F 4 -0.653 9.983 -0.434 1 41.55 ? O1 GOL 205 A 1 HETATM 3 C C2 GOL . . . F 4 1.225 10.423 -1.822 1 43.11 ? C2 GOL 205 A 1 HETATM 4 O O2 GOL . . . F 4 0.682 11.671 -2.18 1 45.28 ? O2 GOL 205 A 1 HETATM 5 C C3 GOL . . . F 4 2.096 10.567 -0.576 1 39.27 ? C3 GOL 205 A 1 HETATM 6 O O3 GOL . . . F 4 3.208 11.398 -0.831 1 34.94 ? O3 GOL 205 A 1 HETATM 7 H H11 GOL . . . F 4 0.451 8.485 -1.302 1 49.99 ? H11 GOL 205 A 1 HETATM 8 H H12 GOL . . . F 4 -0.579 9.407 -2.404 1 49.99 ? H12 GOL 205 A 1 HETATM 9 H HO1 GOL . . . F 4 -1.44 9.42 -0.275 1 49.86 ? HO1 GOL 205 A 1 HETATM 10 H H2 GOL . . . F 4 1.825 10.02 -2.637 1 51.74 ? H2 GOL 205 A 1 HETATM 11 H HO2 GOL . . . F 4 0.143 12.018 -1.439 1 54.33 ? HO2 GOL 205 A 1 HETATM 12 H H31 GOL . . . F 4 1.503 10.992 0.234 1 47.12 ? H31 GOL 205 A 1 HETATM 13 H H32 GOL . . . F 4 2.442 9.584 -0.259 1 47.12 ? H32 GOL 205 A 1 HETATM 14 H HO3 GOL . . . F 4 3.055 11.904 -1.657 1 41.93 ? HO3 GOL 205 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #