data_6DE1 # _model_server_result.job_id 0qXE6QzMvMvZbeGBE5I3kg _model_server_result.datetime_utc '2024-11-15 02:27:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6de1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 6DE1 # _exptl.entry_id 6DE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DE1 _cell.length_a 90.673 _cell.length_b 126.257 _cell.length_c 130.706 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 126.257 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 126.257 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6DE1 _atom_sites.fract_transf_matrix[1][1] 0.011029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 601 601 PO4 PO4 . C 2 PO4 A 1 602 602 PO4 PO4 . D 2 PO4 A 1 603 603 PO4 PO4 . E 2 PO4 A 1 604 604 PO4 PO4 . F 3 GOL A 1 605 605 GOL GOL . G 4 HOH A 1 701 15 HOH HOH . G 4 HOH A 2 702 116 HOH HOH . G 4 HOH A 3 703 164 HOH HOH . G 4 HOH A 4 704 216 HOH HOH . G 4 HOH A 5 705 121 HOH HOH . G 4 HOH A 6 706 277 HOH HOH . G 4 HOH A 7 707 272 HOH HOH . G 4 HOH A 8 708 201 HOH HOH . G 4 HOH A 9 709 130 HOH HOH . G 4 HOH A 10 710 110 HOH HOH . G 4 HOH A 11 711 74 HOH HOH . G 4 HOH A 12 712 194 HOH HOH . G 4 HOH A 13 713 68 HOH HOH . G 4 HOH A 14 714 219 HOH HOH . G 4 HOH A 15 715 140 HOH HOH . G 4 HOH A 16 716 252 HOH HOH . G 4 HOH A 17 717 64 HOH HOH . G 4 HOH A 18 718 270 HOH HOH . G 4 HOH A 19 719 209 HOH HOH . G 4 HOH A 20 720 32 HOH HOH . G 4 HOH A 21 721 24 HOH HOH . G 4 HOH A 22 722 177 HOH HOH . G 4 HOH A 23 723 120 HOH HOH . G 4 HOH A 24 724 20 HOH HOH . G 4 HOH A 25 725 97 HOH HOH . G 4 HOH A 26 726 78 HOH HOH . G 4 HOH A 27 727 73 HOH HOH . G 4 HOH A 28 728 65 HOH HOH . G 4 HOH A 29 729 184 HOH HOH . G 4 HOH A 30 730 166 HOH HOH . G 4 HOH A 31 731 267 HOH HOH . G 4 HOH A 32 732 149 HOH HOH . G 4 HOH A 33 733 25 HOH HOH . G 4 HOH A 34 734 117 HOH HOH . G 4 HOH A 35 735 104 HOH HOH . G 4 HOH A 36 736 163 HOH HOH . G 4 HOH A 37 737 127 HOH HOH . G 4 HOH A 38 738 16 HOH HOH . G 4 HOH A 39 739 274 HOH HOH . G 4 HOH A 40 740 89 HOH HOH . G 4 HOH A 41 741 37 HOH HOH . G 4 HOH A 42 742 83 HOH HOH . G 4 HOH A 43 743 33 HOH HOH . G 4 HOH A 44 744 22 HOH HOH . G 4 HOH A 45 745 265 HOH HOH . G 4 HOH A 46 746 222 HOH HOH . G 4 HOH A 47 747 275 HOH HOH . G 4 HOH A 48 748 100 HOH HOH . G 4 HOH A 49 749 269 HOH HOH . G 4 HOH A 50 750 93 HOH HOH . G 4 HOH A 51 751 85 HOH HOH . G 4 HOH A 52 752 82 HOH HOH . G 4 HOH A 53 753 1 HOH HOH . G 4 HOH A 54 754 12 HOH HOH . G 4 HOH A 55 755 26 HOH HOH . G 4 HOH A 56 756 98 HOH HOH . G 4 HOH A 57 757 54 HOH HOH . G 4 HOH A 58 758 7 HOH HOH . G 4 HOH A 59 759 109 HOH HOH . G 4 HOH A 60 760 75 HOH HOH . G 4 HOH A 61 761 39 HOH HOH . G 4 HOH A 62 762 36 HOH HOH . G 4 HOH A 63 763 279 HOH HOH . G 4 HOH A 64 764 45 HOH HOH . G 4 HOH A 65 765 183 HOH HOH . G 4 HOH A 66 766 199 HOH HOH . G 4 HOH A 67 767 273 HOH HOH . G 4 HOH A 68 768 42 HOH HOH . G 4 HOH A 69 769 3 HOH HOH . G 4 HOH A 70 770 214 HOH HOH . G 4 HOH A 71 771 77 HOH HOH . G 4 HOH A 72 772 192 HOH HOH . G 4 HOH A 73 773 8 HOH HOH . G 4 HOH A 74 774 143 HOH HOH . G 4 HOH A 75 775 250 HOH HOH . G 4 HOH A 76 776 50 HOH HOH . G 4 HOH A 77 777 251 HOH HOH . G 4 HOH A 78 778 162 HOH HOH . G 4 HOH A 79 779 56 HOH HOH . G 4 HOH A 80 780 23 HOH HOH . G 4 HOH A 81 781 134 HOH HOH . G 4 HOH A 82 782 94 HOH HOH . G 4 HOH A 83 783 17 HOH HOH . G 4 HOH A 84 784 158 HOH HOH . G 4 HOH A 85 785 4 HOH HOH . G 4 HOH A 86 786 21 HOH HOH . G 4 HOH A 87 787 86 HOH HOH . G 4 HOH A 88 788 153 HOH HOH . G 4 HOH A 89 789 282 HOH HOH . G 4 HOH A 90 790 79 HOH HOH . G 4 HOH A 91 791 49 HOH HOH . G 4 HOH A 92 792 70 HOH HOH . G 4 HOH A 93 793 38 HOH HOH . G 4 HOH A 94 794 231 HOH HOH . G 4 HOH A 95 795 30 HOH HOH . G 4 HOH A 96 796 264 HOH HOH . G 4 HOH A 97 797 151 HOH HOH . G 4 HOH A 98 798 88 HOH HOH . G 4 HOH A 99 799 249 HOH HOH . G 4 HOH A 100 800 189 HOH HOH . G 4 HOH A 101 801 44 HOH HOH . G 4 HOH A 102 802 276 HOH HOH . G 4 HOH A 103 803 90 HOH HOH . G 4 HOH A 104 804 29 HOH HOH . G 4 HOH A 105 805 135 HOH HOH . G 4 HOH A 106 806 81 HOH HOH . G 4 HOH A 107 807 159 HOH HOH . G 4 HOH A 108 808 165 HOH HOH . G 4 HOH A 109 809 138 HOH HOH . G 4 HOH A 110 810 176 HOH HOH . G 4 HOH A 111 811 205 HOH HOH . G 4 HOH A 112 812 230 HOH HOH . G 4 HOH A 113 813 59 HOH HOH . G 4 HOH A 114 814 43 HOH HOH . G 4 HOH A 115 815 61 HOH HOH . G 4 HOH A 116 816 203 HOH HOH . G 4 HOH A 117 817 232 HOH HOH . G 4 HOH A 118 818 254 HOH HOH . G 4 HOH A 119 819 34 HOH HOH . G 4 HOH A 120 820 71 HOH HOH . G 4 HOH A 121 821 278 HOH HOH . G 4 HOH A 122 822 160 HOH HOH . G 4 HOH A 123 823 146 HOH HOH . G 4 HOH A 124 824 91 HOH HOH . G 4 HOH A 125 825 18 HOH HOH . G 4 HOH A 126 826 169 HOH HOH . G 4 HOH A 127 827 255 HOH HOH . G 4 HOH A 128 828 167 HOH HOH . G 4 HOH A 129 829 208 HOH HOH . G 4 HOH A 130 830 35 HOH HOH . G 4 HOH A 131 831 92 HOH HOH . G 4 HOH A 132 832 27 HOH HOH . G 4 HOH A 133 833 5 HOH HOH . G 4 HOH A 134 834 66 HOH HOH . G 4 HOH A 135 835 76 HOH HOH . G 4 HOH A 136 836 62 HOH HOH . G 4 HOH A 137 837 84 HOH HOH . G 4 HOH A 138 838 128 HOH HOH . G 4 HOH A 139 839 125 HOH HOH . G 4 HOH A 140 840 174 HOH HOH . G 4 HOH A 141 841 188 HOH HOH . G 4 HOH A 142 842 46 HOH HOH . G 4 HOH A 143 843 213 HOH HOH . G 4 HOH A 144 844 271 HOH HOH . G 4 HOH A 145 845 242 HOH HOH . G 4 HOH A 146 846 40 HOH HOH . G 4 HOH A 147 847 221 HOH HOH . G 4 HOH A 148 848 246 HOH HOH . G 4 HOH A 149 849 41 HOH HOH . G 4 HOH A 150 850 69 HOH HOH . G 4 HOH A 151 851 67 HOH HOH . G 4 HOH A 152 852 139 HOH HOH . G 4 HOH A 153 853 99 HOH HOH . G 4 HOH A 154 854 60 HOH HOH . G 4 HOH A 155 855 58 HOH HOH . G 4 HOH A 156 856 179 HOH HOH . G 4 HOH A 157 857 80 HOH HOH . G 4 HOH A 158 858 220 HOH HOH . G 4 HOH A 159 859 239 HOH HOH . G 4 HOH A 160 860 52 HOH HOH . G 4 HOH A 161 861 13 HOH HOH . G 4 HOH A 162 862 57 HOH HOH . G 4 HOH A 163 863 196 HOH HOH . G 4 HOH A 164 864 234 HOH HOH . G 4 HOH A 165 865 226 HOH HOH . G 4 HOH A 166 866 31 HOH HOH . G 4 HOH A 167 867 87 HOH HOH . G 4 HOH A 168 868 9 HOH HOH . G 4 HOH A 169 869 53 HOH HOH . G 4 HOH A 170 870 204 HOH HOH . G 4 HOH A 171 871 211 HOH HOH . G 4 HOH A 172 872 217 HOH HOH . G 4 HOH A 173 873 236 HOH HOH . G 4 HOH A 174 874 72 HOH HOH . G 4 HOH A 175 875 190 HOH HOH . G 4 HOH A 176 876 14 HOH HOH . G 4 HOH A 177 877 47 HOH HOH . G 4 HOH A 178 878 19 HOH HOH . G 4 HOH A 179 879 95 HOH HOH . G 4 HOH A 180 880 11 HOH HOH . G 4 HOH A 181 881 63 HOH HOH . G 4 HOH A 182 882 137 HOH HOH . G 4 HOH A 183 883 126 HOH HOH . G 4 HOH A 184 884 248 HOH HOH . G 4 HOH A 185 885 157 HOH HOH . G 4 HOH A 186 886 96 HOH HOH . G 4 HOH A 187 887 197 HOH HOH . G 4 HOH A 188 888 202 HOH HOH . G 4 HOH A 189 889 105 HOH HOH . G 4 HOH A 190 890 240 HOH HOH . G 4 HOH A 191 891 244 HOH HOH . G 4 HOH A 192 892 186 HOH HOH . G 4 HOH A 193 893 173 HOH HOH . G 4 HOH A 194 894 136 HOH HOH . G 4 HOH A 195 895 28 HOH HOH . G 4 HOH A 196 896 111 HOH HOH . G 4 HOH A 197 897 141 HOH HOH . G 4 HOH A 198 898 118 HOH HOH . G 4 HOH A 199 899 195 HOH HOH . G 4 HOH A 200 900 10 HOH HOH . G 4 HOH A 201 901 144 HOH HOH . G 4 HOH A 202 902 115 HOH HOH . G 4 HOH A 203 903 150 HOH HOH . G 4 HOH A 204 904 6 HOH HOH . G 4 HOH A 205 905 2 HOH HOH . G 4 HOH A 206 906 212 HOH HOH . G 4 HOH A 207 907 148 HOH HOH . G 4 HOH A 208 908 129 HOH HOH . G 4 HOH A 209 909 123 HOH HOH . G 4 HOH A 210 910 155 HOH HOH . G 4 HOH A 211 911 55 HOH HOH . G 4 HOH A 212 912 112 HOH HOH . G 4 HOH A 213 913 225 HOH HOH . G 4 HOH A 214 914 101 HOH HOH . G 4 HOH A 215 915 108 HOH HOH . G 4 HOH A 216 916 103 HOH HOH . G 4 HOH A 217 917 233 HOH HOH . G 4 HOH A 218 918 223 HOH HOH . G 4 HOH A 219 919 241 HOH HOH . G 4 HOH A 220 920 145 HOH HOH . G 4 HOH A 221 921 237 HOH HOH . G 4 HOH A 222 922 48 HOH HOH . G 4 HOH A 223 923 172 HOH HOH . G 4 HOH A 224 924 218 HOH HOH . G 4 HOH A 225 925 268 HOH HOH . G 4 HOH A 226 926 51 HOH HOH . G 4 HOH A 227 927 198 HOH HOH . G 4 HOH A 228 928 191 HOH HOH . G 4 HOH A 229 929 132 HOH HOH . G 4 HOH A 230 930 228 HOH HOH . G 4 HOH A 231 931 185 HOH HOH . G 4 HOH A 232 932 238 HOH HOH . G 4 HOH A 233 933 210 HOH HOH . G 4 HOH A 234 934 284 HOH HOH . G 4 HOH A 235 935 161 HOH HOH . G 4 HOH A 236 936 102 HOH HOH . G 4 HOH A 237 937 200 HOH HOH . G 4 HOH A 238 938 106 HOH HOH . G 4 HOH A 239 939 224 HOH HOH . G 4 HOH A 240 940 227 HOH HOH . G 4 HOH A 241 941 122 HOH HOH . G 4 HOH A 242 942 107 HOH HOH . G 4 HOH A 243 943 215 HOH HOH . G 4 HOH A 244 944 147 HOH HOH . G 4 HOH A 245 945 206 HOH HOH . G 4 HOH A 246 946 114 HOH HOH . G 4 HOH A 247 947 260 HOH HOH . G 4 HOH A 248 948 131 HOH HOH . G 4 HOH A 249 949 142 HOH HOH . G 4 HOH A 250 950 283 HOH HOH . G 4 HOH A 251 951 182 HOH HOH . G 4 HOH A 252 952 235 HOH HOH . G 4 HOH A 253 953 207 HOH HOH . G 4 HOH A 254 954 253 HOH HOH . G 4 HOH A 255 955 266 HOH HOH . G 4 HOH A 256 956 256 HOH HOH . G 4 HOH A 257 957 119 HOH HOH . G 4 HOH A 258 958 261 HOH HOH . G 4 HOH A 259 959 243 HOH HOH . G 4 HOH A 260 960 156 HOH HOH . G 4 HOH A 261 961 247 HOH HOH . G 4 HOH A 262 962 168 HOH HOH . G 4 HOH A 263 963 193 HOH HOH . G 4 HOH A 264 964 154 HOH HOH . G 4 HOH A 265 965 181 HOH HOH . G 4 HOH A 266 966 257 HOH HOH . G 4 HOH A 267 967 262 HOH HOH . G 4 HOH A 268 968 113 HOH HOH . G 4 HOH A 269 969 180 HOH HOH . G 4 HOH A 270 970 245 HOH HOH . G 4 HOH A 271 971 281 HOH HOH . G 4 HOH A 272 972 133 HOH HOH . G 4 HOH A 273 973 229 HOH HOH . G 4 HOH A 274 974 152 HOH HOH . G 4 HOH A 275 975 178 HOH HOH . G 4 HOH A 276 976 263 HOH HOH . G 4 HOH A 277 977 171 HOH HOH . G 4 HOH A 278 978 280 HOH HOH . G 4 HOH A 279 979 124 HOH HOH . G 4 HOH A 280 980 170 HOH HOH . G 4 HOH A 281 981 258 HOH HOH . G 4 HOH A 282 982 175 HOH HOH . G 4 HOH A 283 983 259 HOH HOH . G 4 HOH A 284 984 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 12.453 57.07 25.958 1 59.28 ? C1 GOL 605 A 1 HETATM 2 O O1 GOL . . . F 3 11.16 56.509 25.841 1 49.38 ? O1 GOL 605 A 1 HETATM 3 C C2 GOL . . . F 3 13.036 56.79 27.343 1 59.49 ? C2 GOL 605 A 1 HETATM 4 O O2 GOL . . . F 3 13.454 58.014 27.91 1 66.98 ? O2 GOL 605 A 1 HETATM 5 C C3 GOL . . . F 3 14.235 55.84 27.249 1 48.48 ? C3 GOL 605 A 1 HETATM 6 O O3 GOL . . . F 3 13.868 54.616 26.638 1 24.67 ? O3 GOL 605 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #