data_6DE3 # _model_server_result.job_id Z-5COaKQ18VxZfAaO6sSWQ _model_server_result.datetime_utc '2024-11-15 02:08:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6de3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6DE3 # _exptl.entry_id 6DE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DE3 _cell.length_a 92.362 _cell.length_b 129.098 _cell.length_c 131.016 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 129.098 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 129.098 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O1G ATP . A ATP 602 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 C O1B ATP . A ATP 602 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 C O3B ATP . A ATP 602 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc4 C O1G ATP . A ATP 602 1_555 D MG MG . A MG 603 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc5 C O1B ATP . A ATP 602 1_555 D MG MG . A MG 603 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc6 C O3B ATP . A ATP 602 1_555 D MG MG . A MG 603 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 309 n n P O2 PO4 sing 310 n n P O3 PO4 sing 311 n n P O4 PO4 sing 312 n n # _atom_sites.entry_id 6DE3 _atom_sites.fract_transf_matrix[1][1] 0.010827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 601 601 PO4 PO4 . C 3 ATP A 1 602 602 ATP ATP . D 4 MG A 1 603 603 MG MG . E 5 HOH A 1 701 10 HOH HOH . E 5 HOH A 2 702 2 HOH HOH . E 5 HOH A 3 703 22 HOH HOH . E 5 HOH A 4 704 11 HOH HOH . E 5 HOH A 5 705 3 HOH HOH . E 5 HOH A 6 706 1 HOH HOH . E 5 HOH A 7 707 24 HOH HOH . E 5 HOH A 8 708 12 HOH HOH . E 5 HOH A 9 709 37 HOH HOH . E 5 HOH A 10 710 32 HOH HOH . E 5 HOH A 11 711 39 HOH HOH . E 5 HOH A 12 712 14 HOH HOH . E 5 HOH A 13 713 4 HOH HOH . E 5 HOH A 14 714 36 HOH HOH . E 5 HOH A 15 715 35 HOH HOH . E 5 HOH A 16 716 38 HOH HOH . E 5 HOH A 17 717 42 HOH HOH . E 5 HOH A 18 718 7 HOH HOH . E 5 HOH A 19 719 8 HOH HOH . E 5 HOH A 20 720 27 HOH HOH . E 5 HOH A 21 721 41 HOH HOH . E 5 HOH A 22 722 16 HOH HOH . E 5 HOH A 23 723 23 HOH HOH . E 5 HOH A 24 724 6 HOH HOH . E 5 HOH A 25 725 40 HOH HOH . E 5 HOH A 26 726 45 HOH HOH . E 5 HOH A 27 727 26 HOH HOH . E 5 HOH A 28 728 33 HOH HOH . E 5 HOH A 29 729 20 HOH HOH . E 5 HOH A 30 730 21 HOH HOH . E 5 HOH A 31 731 18 HOH HOH . E 5 HOH A 32 732 9 HOH HOH . E 5 HOH A 33 733 5 HOH HOH . E 5 HOH A 34 734 48 HOH HOH . E 5 HOH A 35 735 29 HOH HOH . E 5 HOH A 36 736 19 HOH HOH . E 5 HOH A 37 737 44 HOH HOH . E 5 HOH A 38 738 30 HOH HOH . E 5 HOH A 39 739 43 HOH HOH . E 5 HOH A 40 740 49 HOH HOH . E 5 HOH A 41 741 25 HOH HOH . E 5 HOH A 42 742 28 HOH HOH . E 5 HOH A 43 743 34 HOH HOH . E 5 HOH A 44 744 15 HOH HOH . E 5 HOH A 45 745 17 HOH HOH . E 5 HOH A 46 746 47 HOH HOH . E 5 HOH A 47 747 31 HOH HOH . E 5 HOH A 48 748 50 HOH HOH . E 5 HOH A 49 749 46 HOH HOH . E 5 HOH A 50 750 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 7.408 45.675 22.087 1 76.99 ? P PO4 601 A 1 HETATM 2 O O1 PO4 . . . B 2 8.347 46.191 21.021 1 74.51 ? O1 PO4 601 A 1 HETATM 3 O O2 PO4 . . . B 2 6.687 46.83 22.734 1 71.54 ? O2 PO4 601 A 1 HETATM 4 O O3 PO4 . . . B 2 8.213 44.97 23.151 1 78.61 ? O3 PO4 601 A 1 HETATM 5 O O4 PO4 . . . B 2 6.401 44.724 21.465 1 81.4 ? O4 PO4 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #