data_6DE4
#
_model_server_result.job_id            U3YD0Bd46Rk1XbGQbZlTIw 
_model_server_result.datetime_utc      '2024-11-28 11:20:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6de4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6DE4 
#
_exptl.entry_id    6DE4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DE4 
_cell.length_a            104.611 
_cell.length_b            104.66 
_cell.length_c            144.333 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DE4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,S 1 1 
B,J,K,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 315 n n 
PA O2A NDP sing 316 n n 
PA O5B NDP sing 317 n n 
PA O3 NDP sing 318 n n 
O2A HOA2 NDP sing 319 n n 
O5B C5B NDP sing 320 n n 
C5B C4B NDP sing 321 n n 
C5B H51A NDP sing 322 n n 
C5B H52A NDP sing 323 n n 
C4B O4B NDP sing 324 n n 
C4B C3B NDP sing 325 n n 
C4B H4B NDP sing 326 n n 
O4B C1B NDP sing 327 n n 
C3B O3B NDP sing 328 n n 
C3B C2B NDP sing 329 n n 
C3B H3B NDP sing 330 n n 
O3B HO3A NDP sing 331 n n 
C2B O2B NDP sing 332 n n 
C2B C1B NDP sing 333 n n 
C2B H2B NDP sing 334 n n 
O2B P2B NDP sing 335 n n 
C1B N9A NDP sing 336 n n 
C1B H1B NDP sing 337 n n 
N9A C8A NDP sing 338 n y 
N9A C4A NDP sing 339 n y 
C8A N7A NDP doub 340 n y 
C8A H8A NDP sing 341 n n 
N7A C5A NDP sing 342 n y 
C5A C6A NDP sing 343 n y 
C5A C4A NDP doub 344 n y 
C6A N6A NDP sing 345 n n 
C6A N1A NDP doub 346 n y 
N6A H61A NDP sing 347 n n 
N6A H62A NDP sing 348 n n 
N1A C2A NDP sing 349 n y 
C2A N3A NDP doub 350 n y 
C2A H2A NDP sing 351 n n 
N3A C4A NDP sing 352 n y 
O3 PN NDP sing 353 n n 
PN O1N NDP doub 354 n n 
PN O2N NDP sing 355 n n 
PN O5D NDP sing 356 n n 
O2N H21N NDP sing 357 n n 
O5D C5D NDP sing 358 n n 
C5D C4D NDP sing 359 n n 
C5D H51N NDP sing 360 n n 
C5D H52N NDP sing 361 n n 
C4D O4D NDP sing 362 n n 
C4D C3D NDP sing 363 n n 
C4D H4D NDP sing 364 n n 
O4D C1D NDP sing 365 n n 
C3D O3D NDP sing 366 n n 
C3D C2D NDP sing 367 n n 
C3D H3D NDP sing 368 n n 
O3D HO3N NDP sing 369 n n 
C2D O2D NDP sing 370 n n 
C2D C1D NDP sing 371 n n 
C2D H2D NDP sing 372 n n 
O2D HO2N NDP sing 373 n n 
C1D N1N NDP sing 374 n n 
C1D H1D NDP sing 375 n n 
N1N C2N NDP sing 376 n n 
N1N C6N NDP sing 377 n n 
C2N C3N NDP doub 378 n n 
C2N H2N NDP sing 379 n n 
C3N C7N NDP sing 380 n n 
C3N C4N NDP sing 381 n n 
C7N O7N NDP doub 382 n n 
C7N N7N NDP sing 383 n n 
N7N H71N NDP sing 384 n n 
N7N H72N NDP sing 385 n n 
C4N C5N NDP sing 386 n n 
C4N H41N NDP sing 387 n n 
C4N H42N NDP sing 388 n n 
C5N C6N NDP doub 389 n n 
C5N H5N NDP sing 390 n n 
C6N H6N NDP sing 391 n n 
P2B O1X NDP doub 392 n n 
P2B O2X NDP sing 393 n n 
P2B O3X NDP sing 394 n n 
O2X HOP2 NDP sing 395 n n 
O3X HOP3 NDP sing 396 n n 
#
_atom_sites.entry_id                     6DE4 
_atom_sites.fract_transf_matrix[1][1]    0.009559 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009555 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006928 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 201 201 NDP NDP . 
D 3 G6Y A 1 202 204 G6Y DRG . 
E 4 CL A 1 203 75 CL CL . 
F 5 GOL A 1 204 79 GOL GOL . 
G 5 GOL A 1 205 80 GOL GOL . 
H 6 EOH A 1 206 81 EOH EOH . 
I 6 EOH A 1 207 83 EOH EOH . 
J 2 NDP B 1 201 202 NDP NDP . 
K 3 G6Y B 1 202 205 G6Y DRG . 
L 7 CA B 1 203 73 CA CA . 
M 7 CA B 1 204 74 CA CA . 
N 4 CL B 1 205 76 CL CL . 
O 8 SO4 B 1 206 77 SO4 SO4 . 
P 8 SO4 B 1 207 78 SO4 SO4 . 
Q 6 EOH B 1 208 82 EOH EOH . 
R 6 EOH B 1 209 84 EOH EOH . 
S 9 HOH A 1 301 2 HOH HOH . 
S 9 HOH A 2 302 8 HOH HOH . 
S 9 HOH A 3 303 59 HOH HOH . 
S 9 HOH A 4 304 48 HOH HOH . 
S 9 HOH A 5 305 37 HOH HOH . 
S 9 HOH A 6 306 49 HOH HOH . 
S 9 HOH A 7 307 39 HOH HOH . 
S 9 HOH A 8 308 46 HOH HOH . 
S 9 HOH A 9 309 62 HOH HOH . 
S 9 HOH A 10 310 34 HOH HOH . 
S 9 HOH A 11 311 60 HOH HOH . 
S 9 HOH A 12 312 43 HOH HOH . 
S 9 HOH A 13 313 23 HOH HOH . 
S 9 HOH A 14 314 18 HOH HOH . 
S 9 HOH A 15 315 45 HOH HOH . 
S 9 HOH A 16 316 66 HOH HOH . 
S 9 HOH A 17 317 14 HOH HOH . 
S 9 HOH A 18 318 63 HOH HOH . 
S 9 HOH A 19 319 70 HOH HOH . 
S 9 HOH A 20 320 26 HOH HOH . 
S 9 HOH A 21 321 44 HOH HOH . 
S 9 HOH A 22 322 53 HOH HOH . 
S 9 HOH A 23 323 28 HOH HOH . 
S 9 HOH A 24 324 11 HOH HOH . 
S 9 HOH A 25 325 40 HOH HOH . 
S 9 HOH A 26 326 56 HOH HOH . 
S 9 HOH A 27 327 61 HOH HOH . 
S 9 HOH A 28 328 16 HOH HOH . 
S 9 HOH A 29 329 67 HOH HOH . 
S 9 HOH A 30 330 19 HOH HOH . 
S 9 HOH A 31 331 21 HOH HOH . 
S 9 HOH A 32 332 35 HOH HOH . 
S 9 HOH A 33 333 69 HOH HOH . 
S 9 HOH A 34 334 52 HOH HOH . 
S 9 HOH A 35 335 30 HOH HOH . 
S 9 HOH A 36 336 36 HOH HOH . 
S 9 HOH A 37 337 4 HOH HOH . 
T 9 HOH B 1 301 10 HOH HOH . 
T 9 HOH B 2 302 9 HOH HOH . 
T 9 HOH B 3 303 6 HOH HOH . 
T 9 HOH B 4 304 64 HOH HOH . 
T 9 HOH B 5 305 25 HOH HOH . 
T 9 HOH B 6 306 5 HOH HOH . 
T 9 HOH B 7 307 57 HOH HOH . 
T 9 HOH B 8 308 38 HOH HOH . 
T 9 HOH B 9 309 54 HOH HOH . 
T 9 HOH B 10 310 42 HOH HOH . 
T 9 HOH B 11 311 50 HOH HOH . 
T 9 HOH B 12 312 20 HOH HOH . 
T 9 HOH B 13 313 12 HOH HOH . 
T 9 HOH B 14 314 65 HOH HOH . 
T 9 HOH B 15 315 22 HOH HOH . 
T 9 HOH B 16 316 71 HOH HOH . 
T 9 HOH B 17 317 13 HOH HOH . 
T 9 HOH B 18 318 41 HOH HOH . 
T 9 HOH B 19 319 72 HOH HOH . 
T 9 HOH B 20 320 68 HOH HOH . 
T 9 HOH B 21 321 27 HOH HOH . 
T 9 HOH B 22 322 24 HOH HOH . 
T 9 HOH B 23 323 15 HOH HOH . 
T 9 HOH B 24 324 51 HOH HOH . 
T 9 HOH B 25 325 58 HOH HOH . 
T 9 HOH B 26 326 55 HOH HOH . 
T 9 HOH B 27 327 33 HOH HOH . 
T 9 HOH B 28 328 17 HOH HOH . 
T 9 HOH B 29 329 32 HOH HOH . 
T 9 HOH B 30 330 47 HOH HOH . 
T 9 HOH B 31 331 29 HOH HOH . 
T 9 HOH B 32 332 31 HOH HOH . 
T 9 HOH B 33 333 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . C 2 25.898 19.345 164.532 1 59.7 ? PA NDP 201 A 1 
HETATM 2 O O1A NDP . . . C 2 25.951 18.298 165.591 1 55.85 ? O1A NDP 201 A 1 
HETATM 3 O O2A NDP . . . C 2 25.389 19.061 163.149 1 66.4 ? O2A NDP 201 A 1 
HETATM 4 O O5B NDP . . . C 2 25.025 20.612 165.066 1 70.05 ? O5B NDP 201 A 1 
HETATM 5 C C5B NDP . . . C 2 25.709 21.07 166.173 1 74.43 ? C5B NDP 201 A 1 
HETATM 6 C C4B NDP . . . C 2 24.835 22.125 166.765 1 85.08 ? C4B NDP 201 A 1 
HETATM 7 O O4B NDP . . . C 2 23.464 21.804 166.45 1 87.13 ? O4B NDP 201 A 1 
HETATM 8 C C3B NDP . . . C 2 25.028 22.158 168.305 1 89.17 ? C3B NDP 201 A 1 
HETATM 9 O O3B NDP . . . C 2 25.932 23.163 168.651 1 77.58 ? O3B NDP 201 A 1 
HETATM 10 C C2B NDP . . . C 2 23.603 22.565 168.754 1 88.88 ? C2B NDP 201 A 1 
HETATM 11 O O2B NDP . . . C 2 23.357 23.852 168.6 1 87.5 ? O2B NDP 201 A 1 
HETATM 12 C C1B NDP . . . C 2 22.75 21.753 167.683 1 79.72 ? C1B NDP 201 A 1 
HETATM 13 N N9A NDP . . . C 2 22.607 20.354 168.07 1 86.04 ? N9A NDP 201 A 1 
HETATM 14 C C8A NDP . . . C 2 23.407 19.231 167.718 1 68.49 ? C8A NDP 201 A 1 
HETATM 15 N N7A NDP . . . C 2 22.975 18.081 168.284 1 71.16 ? N7A NDP 201 A 1 
HETATM 16 C C5A NDP . . . C 2 21.844 18.487 169.035 1 79.23 ? C5A NDP 201 A 1 
HETATM 17 C C6A NDP . . . C 2 20.945 17.783 169.849 1 85 ? C6A NDP 201 A 1 
HETATM 18 N N6A NDP . . . C 2 21.09 16.436 170.016 1 83.14 ? N6A NDP 201 A 1 
HETATM 19 N N1A NDP . . . C 2 19.898 18.406 170.492 1 73.08 ? N1A NDP 201 A 1 
HETATM 20 C C2A NDP . . . C 2 19.819 19.761 170.27 1 65.04 ? C2A NDP 201 A 1 
HETATM 21 N N3A NDP . . . C 2 20.583 20.576 169.535 1 80.65 ? N3A NDP 201 A 1 
HETATM 22 C C4A NDP . . . C 2 21.615 19.897 168.911 1 92.93 ? C4A NDP 201 A 1 
HETATM 23 O O3 NDP . . . C 2 27.485 19.9 164.422 1 87.51 ? O3 NDP 201 A 1 
HETATM 24 P PN NDP . . . C 2 28.618 18.746 164.299 1 112.69 ? PN NDP 201 A 1 
HETATM 25 O O1N NDP . . . C 2 29.921 19.442 164.332 1 93.06 ? O1N NDP 201 A 1 
HETATM 26 O O2N NDP . . . C 2 28.413 17.445 165.046 1 84.48 ? O2N NDP 201 A 1 
HETATM 27 O O5D NDP . . . C 2 28.668 18.179 162.614 1 96.61 ? O5D NDP 201 A 1 
HETATM 28 C C5D NDP . . . C 2 29.147 19.242 161.878 1 78.43 ? C5D NDP 201 A 1 
HETATM 29 C C4D NDP . . . C 2 30.318 18.761 161.036 1 92.69 ? C4D NDP 201 A 1 
HETATM 30 O O4D NDP . . . C 2 30.135 17.372 160.651 1 91.55 ? O4D NDP 201 A 1 
HETATM 31 C C3D NDP . . . C 2 30.371 19.617 159.733 1 92.44 ? C3D NDP 201 A 1 
HETATM 32 O O3D NDP . . . C 2 31.707 19.924 159.48 1 76.67 ? O3D NDP 201 A 1 
HETATM 33 C C2D NDP . . . C 2 29.781 18.672 158.66 1 90.93 ? C2D NDP 201 A 1 
HETATM 34 O O2D NDP . . . C 2 30.359 18.842 157.394 1 69.6 ? O2D NDP 201 A 1 
HETATM 35 C C1D NDP . . . C 2 30.198 17.264 159.227 1 89.2 ? C1D NDP 201 A 1 
HETATM 36 N N1N NDP . . . C 2 29.243 16.196 158.803 1 97.64 ? N1N NDP 201 A 1 
HETATM 37 C C2N NDP . . . C 2 29.706 15.078 158.125 1 83.21 ? C2N NDP 201 A 1 
HETATM 38 C C3N NDP . . . C 2 29.025 13.901 158.242 1 79.22 ? C3N NDP 201 A 1 
HETATM 39 C C7N NDP . . . C 2 29.56 12.759 157.517 1 66.7 ? C7N NDP 201 A 1 
HETATM 40 O O7N NDP . . . C 2 28.98 11.661 157.421 1 48.94 ? O7N NDP 201 A 1 
HETATM 41 N N7N NDP . . . C 2 30.815 12.94 156.927 1 54.46 ? N7N NDP 201 A 1 
HETATM 42 C C4N NDP . . . C 2 27.791 13.793 159.081 1 65.62 ? C4N NDP 201 A 1 
HETATM 43 C C5N NDP . . . C 2 27.157 15.135 159.253 1 68.75 ? C5N NDP 201 A 1 
HETATM 44 C C6N NDP . . . C 2 27.862 16.268 159.116 1 75.93 ? C6N NDP 201 A 1 
HETATM 45 P P2B NDP . . . C 2 22.168 24.527 169.778 1 55.94 ? P2B NDP 201 A 1 
HETATM 46 O O1X NDP . . . C 2 21.492 23.267 170.215 1 60.64 ? O1X NDP 201 A 1 
HETATM 47 O O2X NDP . . . C 2 23.073 25.229 170.796 1 88.96 ? O2X NDP 201 A 1 
HETATM 48 O O3X NDP . . . C 2 21.459 25.385 168.776 1 62.95 ? O3X NDP 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           625 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           48 
#