data_6DE4 # _model_server_result.job_id ZUguUYWDtYKwIL2h8UWUMQ _model_server_result.datetime_utc '2024-11-24 18:59:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6de4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 6DE4 # _exptl.entry_id 6DE4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DE4 _cell.length_a 104.611 _cell.length_b 104.66 _cell.length_c 144.333 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,S 1 1 B,J,K,L,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 315 n n PA O2A NDP sing 316 n n PA O5B NDP sing 317 n n PA O3 NDP sing 318 n n O2A HOA2 NDP sing 319 n n O5B C5B NDP sing 320 n n C5B C4B NDP sing 321 n n C5B H51A NDP sing 322 n n C5B H52A NDP sing 323 n n C4B O4B NDP sing 324 n n C4B C3B NDP sing 325 n n C4B H4B NDP sing 326 n n O4B C1B NDP sing 327 n n C3B O3B NDP sing 328 n n C3B C2B NDP sing 329 n n C3B H3B NDP sing 330 n n O3B HO3A NDP sing 331 n n C2B O2B NDP sing 332 n n C2B C1B NDP sing 333 n n C2B H2B NDP sing 334 n n O2B P2B NDP sing 335 n n C1B N9A NDP sing 336 n n C1B H1B NDP sing 337 n n N9A C8A NDP sing 338 n y N9A C4A NDP sing 339 n y C8A N7A NDP doub 340 n y C8A H8A NDP sing 341 n n N7A C5A NDP sing 342 n y C5A C6A NDP sing 343 n y C5A C4A NDP doub 344 n y C6A N6A NDP sing 345 n n C6A N1A NDP doub 346 n y N6A H61A NDP sing 347 n n N6A H62A NDP sing 348 n n N1A C2A NDP sing 349 n y C2A N3A NDP doub 350 n y C2A H2A NDP sing 351 n n N3A C4A NDP sing 352 n y O3 PN NDP sing 353 n n PN O1N NDP doub 354 n n PN O2N NDP sing 355 n n PN O5D NDP sing 356 n n O2N H21N NDP sing 357 n n O5D C5D NDP sing 358 n n C5D C4D NDP sing 359 n n C5D H51N NDP sing 360 n n C5D H52N NDP sing 361 n n C4D O4D NDP sing 362 n n C4D C3D NDP sing 363 n n C4D H4D NDP sing 364 n n O4D C1D NDP sing 365 n n C3D O3D NDP sing 366 n n C3D C2D NDP sing 367 n n C3D H3D NDP sing 368 n n O3D HO3N NDP sing 369 n n C2D O2D NDP sing 370 n n C2D C1D NDP sing 371 n n C2D H2D NDP sing 372 n n O2D HO2N NDP sing 373 n n C1D N1N NDP sing 374 n n C1D H1D NDP sing 375 n n N1N C2N NDP sing 376 n n N1N C6N NDP sing 377 n n C2N C3N NDP doub 378 n n C2N H2N NDP sing 379 n n C3N C7N NDP sing 380 n n C3N C4N NDP sing 381 n n C7N O7N NDP doub 382 n n C7N N7N NDP sing 383 n n N7N H71N NDP sing 384 n n N7N H72N NDP sing 385 n n C4N C5N NDP sing 386 n n C4N H41N NDP sing 387 n n C4N H42N NDP sing 388 n n C5N C6N NDP doub 389 n n C5N H5N NDP sing 390 n n C6N H6N NDP sing 391 n n P2B O1X NDP doub 392 n n P2B O2X NDP sing 393 n n P2B O3X NDP sing 394 n n O2X HOP2 NDP sing 395 n n O3X HOP3 NDP sing 396 n n # _atom_sites.entry_id 6DE4 _atom_sites.fract_transf_matrix[1][1] 0.009559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 201 201 NDP NDP . D 3 G6Y A 1 202 204 G6Y DRG . E 4 CL A 1 203 75 CL CL . F 5 GOL A 1 204 79 GOL GOL . G 5 GOL A 1 205 80 GOL GOL . H 6 EOH A 1 206 81 EOH EOH . I 6 EOH A 1 207 83 EOH EOH . J 2 NDP B 1 201 202 NDP NDP . K 3 G6Y B 1 202 205 G6Y DRG . L 7 CA B 1 203 73 CA CA . M 7 CA B 1 204 74 CA CA . N 4 CL B 1 205 76 CL CL . O 8 SO4 B 1 206 77 SO4 SO4 . P 8 SO4 B 1 207 78 SO4 SO4 . Q 6 EOH B 1 208 82 EOH EOH . R 6 EOH B 1 209 84 EOH EOH . S 9 HOH A 1 301 2 HOH HOH . S 9 HOH A 2 302 8 HOH HOH . S 9 HOH A 3 303 59 HOH HOH . S 9 HOH A 4 304 48 HOH HOH . S 9 HOH A 5 305 37 HOH HOH . S 9 HOH A 6 306 49 HOH HOH . S 9 HOH A 7 307 39 HOH HOH . S 9 HOH A 8 308 46 HOH HOH . S 9 HOH A 9 309 62 HOH HOH . S 9 HOH A 10 310 34 HOH HOH . S 9 HOH A 11 311 60 HOH HOH . S 9 HOH A 12 312 43 HOH HOH . S 9 HOH A 13 313 23 HOH HOH . S 9 HOH A 14 314 18 HOH HOH . S 9 HOH A 15 315 45 HOH HOH . S 9 HOH A 16 316 66 HOH HOH . S 9 HOH A 17 317 14 HOH HOH . S 9 HOH A 18 318 63 HOH HOH . S 9 HOH A 19 319 70 HOH HOH . S 9 HOH A 20 320 26 HOH HOH . S 9 HOH A 21 321 44 HOH HOH . S 9 HOH A 22 322 53 HOH HOH . S 9 HOH A 23 323 28 HOH HOH . S 9 HOH A 24 324 11 HOH HOH . S 9 HOH A 25 325 40 HOH HOH . S 9 HOH A 26 326 56 HOH HOH . S 9 HOH A 27 327 61 HOH HOH . S 9 HOH A 28 328 16 HOH HOH . S 9 HOH A 29 329 67 HOH HOH . S 9 HOH A 30 330 19 HOH HOH . S 9 HOH A 31 331 21 HOH HOH . S 9 HOH A 32 332 35 HOH HOH . S 9 HOH A 33 333 69 HOH HOH . S 9 HOH A 34 334 52 HOH HOH . S 9 HOH A 35 335 30 HOH HOH . S 9 HOH A 36 336 36 HOH HOH . S 9 HOH A 37 337 4 HOH HOH . T 9 HOH B 1 301 10 HOH HOH . T 9 HOH B 2 302 9 HOH HOH . T 9 HOH B 3 303 6 HOH HOH . T 9 HOH B 4 304 64 HOH HOH . T 9 HOH B 5 305 25 HOH HOH . T 9 HOH B 6 306 5 HOH HOH . T 9 HOH B 7 307 57 HOH HOH . T 9 HOH B 8 308 38 HOH HOH . T 9 HOH B 9 309 54 HOH HOH . T 9 HOH B 10 310 42 HOH HOH . T 9 HOH B 11 311 50 HOH HOH . T 9 HOH B 12 312 20 HOH HOH . T 9 HOH B 13 313 12 HOH HOH . T 9 HOH B 14 314 65 HOH HOH . T 9 HOH B 15 315 22 HOH HOH . T 9 HOH B 16 316 71 HOH HOH . T 9 HOH B 17 317 13 HOH HOH . T 9 HOH B 18 318 41 HOH HOH . T 9 HOH B 19 319 72 HOH HOH . T 9 HOH B 20 320 68 HOH HOH . T 9 HOH B 21 321 27 HOH HOH . T 9 HOH B 22 322 24 HOH HOH . T 9 HOH B 23 323 15 HOH HOH . T 9 HOH B 24 324 51 HOH HOH . T 9 HOH B 25 325 58 HOH HOH . T 9 HOH B 26 326 55 HOH HOH . T 9 HOH B 27 327 33 HOH HOH . T 9 HOH B 28 328 17 HOH HOH . T 9 HOH B 29 329 32 HOH HOH . T 9 HOH B 30 330 47 HOH HOH . T 9 HOH B 31 331 29 HOH HOH . T 9 HOH B 32 332 31 HOH HOH . T 9 HOH B 33 333 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . J 2 32.953 -25.906 160.266 1 59.35 ? PA NDP 201 B 1 HETATM 2 O O1A NDP . . . J 2 34.019 -25.915 159.224 1 54.19 ? O1A NDP 201 B 1 HETATM 3 O O2A NDP . . . J 2 33.221 -25.45 161.671 1 67.39 ? O2A NDP 201 B 1 HETATM 4 O O5B NDP . . . J 2 31.684 -25.019 159.761 1 71.72 ? O5B NDP 201 B 1 HETATM 5 C C5B NDP . . . J 2 31.369 -25.538 158.524 1 73.66 ? C5B NDP 201 B 1 HETATM 6 C C4B NDP . . . J 2 30.417 -24.569 157.885 1 83.52 ? C4B NDP 201 B 1 HETATM 7 O O4B NDP . . . J 2 30.831 -23.201 158.158 1 75.67 ? O4B NDP 201 B 1 HETATM 8 C C3B NDP . . . J 2 30.402 -24.801 156.35 1 95.07 ? C3B NDP 201 B 1 HETATM 9 O O3B NDP . . . J 2 29.397 -25.718 156.02 1 76.77 ? O3B NDP 201 B 1 HETATM 10 C C2B NDP . . . J 2 30.003 -23.38 155.89 1 87.48 ? C2B NDP 201 B 1 HETATM 11 O O2B NDP . . . J 2 28.741 -23.092 156.168 1 79.43 ? O2B NDP 201 B 1 HETATM 12 C C1B NDP . . . J 2 30.921 -22.544 156.892 1 78.21 ? C1B NDP 201 B 1 HETATM 13 N N9A NDP . . . J 2 32.337 -22.538 156.504 1 84.88 ? N9A NDP 201 B 1 HETATM 14 C C8A NDP . . . J 2 33.359 -23.443 156.881 1 68.77 ? C8A NDP 201 B 1 HETATM 15 N N7A NDP . . . J 2 34.561 -23.146 156.34 1 82.94 ? N7A NDP 201 B 1 HETATM 16 C C5A NDP . . . J 2 34.311 -21.982 155.58 1 78.43 ? C5A NDP 201 B 1 HETATM 17 C C6A NDP . . . J 2 35.148 -21.174 154.778 1 89.9 ? C6A NDP 201 B 1 HETATM 18 N N6A NDP . . . J 2 36.511 -21.465 154.625 1 84.07 ? N6A NDP 201 B 1 HETATM 19 N N1A NDP . . . J 2 34.641 -20.073 154.124 1 76.8 ? N1A NDP 201 B 1 HETATM 20 C C2A NDP . . . J 2 33.295 -19.828 154.318 1 62.94 ? C2A NDP 201 B 1 HETATM 21 N N3A NDP . . . J 2 32.368 -20.482 155.029 1 65.92 ? N3A NDP 201 B 1 HETATM 22 C C4A NDP . . . J 2 32.921 -21.591 155.673 1 92.5 ? C4A NDP 201 B 1 HETATM 23 O O3 NDP . . . J 2 32.416 -27.504 160.297 1 86.48 ? O3 NDP 201 B 1 HETATM 24 P PN NDP . . . J 2 33.579 -28.624 160.47 1 110.5 ? PN NDP 201 B 1 HETATM 25 O O1N NDP . . . J 2 32.902 -29.937 160.431 1 88.34 ? O1N NDP 201 B 1 HETATM 26 O O2N NDP . . . J 2 34.892 -28.402 159.751 1 86.67 ? O2N NDP 201 B 1 HETATM 27 O O5D NDP . . . J 2 34.115 -28.65 162.168 1 94.58 ? O5D NDP 201 B 1 HETATM 28 C C5D NDP . . . J 2 33.051 -29.134 162.898 1 78.29 ? C5D NDP 201 B 1 HETATM 29 C C4D NDP . . . J 2 33.524 -30.332 163.707 1 93.45 ? C4D NDP 201 B 1 HETATM 30 O O4D NDP . . . J 2 34.924 -30.177 164.082 1 90.09 ? O4D NDP 201 B 1 HETATM 31 C C3D NDP . . . J 2 32.686 -30.401 165.021 1 90.61 ? C3D NDP 201 B 1 HETATM 32 O O3D NDP . . . J 2 32.452 -31.746 165.324 1 73.5 ? O3D NDP 201 B 1 HETATM 33 C C2D NDP . . . J 2 33.623 -29.738 166.047 1 90.38 ? C2D NDP 201 B 1 HETATM 34 O O2D NDP . . . J 2 33.448 -30.229 167.347 1 70.8 ? O2D NDP 201 B 1 HETATM 35 C C1D NDP . . . J 2 35.027 -30.2 165.507 1 87.42 ? C1D NDP 201 B 1 HETATM 36 N N1N NDP . . . J 2 36.118 -29.263 165.911 1 96.29 ? N1N NDP 201 B 1 HETATM 37 C C2N NDP . . . J 2 37.219 -29.749 166.589 1 85.44 ? C2N NDP 201 B 1 HETATM 38 C C3N NDP . . . J 2 38.411 -29.098 166.483 1 80.06 ? C3N NDP 201 B 1 HETATM 39 C C7N NDP . . . J 2 39.533 -29.676 167.209 1 65.79 ? C7N NDP 201 B 1 HETATM 40 O O7N NDP . . . J 2 40.638 -29.117 167.34 1 50.28 ? O7N NDP 201 B 1 HETATM 41 N N7N NDP . . . J 2 39.328 -30.958 167.75 1 58.59 ? N7N NDP 201 B 1 HETATM 42 C C4N NDP . . . J 2 38.559 -27.858 165.656 1 68.99 ? C4N NDP 201 B 1 HETATM 43 C C5N NDP . . . J 2 37.234 -27.205 165.456 1 68.17 ? C5N NDP 201 B 1 HETATM 44 C C6N NDP . . . J 2 36.084 -27.888 165.581 1 72.92 ? C6N NDP 201 B 1 HETATM 45 P P2B NDP . . . J 2 27.857 -22.12 154.953 1 53.3 ? P2B NDP 201 B 1 HETATM 46 O O1X NDP . . . J 2 28.999 -21.329 154.394 1 62.18 ? O1X NDP 201 B 1 HETATM 47 O O2X NDP . . . J 2 27.22 -23.178 154.046 1 85.23 ? O2X NDP 201 B 1 HETATM 48 O O3X NDP . . . J 2 26.961 -21.447 155.95 1 62.12 ? O3X NDP 201 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 48 #