data_6DE4
#
_model_server_result.job_id            iyE_WVo0KBCuDn8DhoRZPQ 
_model_server_result.datetime_utc      '2024-11-28 12:02:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6de4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":202}' 
#
_entry.id    6DE4 
#
_exptl.entry_id    6DE4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              416.472 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3'-[(2R)-4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl]-5'-methoxy[1,1'-biphenyl]-4-carboxylic acid" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DE4 
_cell.length_a            104.611 
_cell.length_b            104.66 
_cell.length_c            144.333 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DE4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,S 1 1 
B,J,K,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 K N N 
#
_chem_comp.formula           'C24 H24 N4 O3' 
_chem_comp.formula_weight    416.472 
_chem_comp.id                G6Y 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3'-[(2R)-4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl]-5'-methoxy[1,1'-biphenyl]-4-carboxylic acid" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAH C6 G6Y sing 91 n n 
CBC CAK G6Y sing 92 n n 
C6 N1 G6Y doub 93 n y 
C6 C5 G6Y sing 94 n y 
N1 C2 G6Y sing 95 n y 
CAJ CAK G6Y sing 96 n n 
CAJ CAI G6Y trip 97 n n 
CAK CAL G6Y sing 98 n n 
CAI C5 G6Y sing 99 n n 
C5 C4 G6Y doub 100 n y 
C2 NAG G6Y sing 101 n n 
C2 N3 G6Y doub 102 n y 
CAL CAM G6Y doub 103 n y 
CAL CAQ G6Y sing 104 n y 
CAM CAN G6Y sing 105 n y 
C4 N3 G6Y sing 106 n y 
C4 CBD G6Y sing 107 n n 
CAQ CAP G6Y doub 108 n y 
CAS CAT G6Y doub 109 n y 
CAS CAR G6Y sing 110 n y 
CAT CAU G6Y sing 111 n y 
CAN CAR G6Y sing 112 n n 
CAN CAO G6Y doub 113 n y 
CBD CBE G6Y sing 114 n n 
OBB CAZ G6Y doub 115 n n 
CAR CAW G6Y doub 116 n y 
CAP CAO G6Y sing 117 n y 
CAP OAX G6Y sing 118 n n 
CAU CAZ G6Y sing 119 n n 
CAU CAV G6Y doub 120 n y 
CAZ OBA G6Y sing 121 n n 
CAW CAV G6Y sing 122 n y 
OAX CAY G6Y sing 123 n n 
CBE H1 G6Y sing 124 n n 
CBE H2 G6Y sing 125 n n 
CBE H3 G6Y sing 126 n n 
CBD H4 G6Y sing 127 n n 
CBD H5 G6Y sing 128 n n 
NAG H6 G6Y sing 129 n n 
NAG H7 G6Y sing 130 n n 
NAH H8 G6Y sing 131 n n 
NAH H9 G6Y sing 132 n n 
CAK H10 G6Y sing 133 n n 
CBC H11 G6Y sing 134 n n 
CBC H12 G6Y sing 135 n n 
CBC H13 G6Y sing 136 n n 
CAM H14 G6Y sing 137 n n 
CAQ H15 G6Y sing 138 n n 
CAY H16 G6Y sing 139 n n 
CAY H17 G6Y sing 140 n n 
CAY H18 G6Y sing 141 n n 
CAO H19 G6Y sing 142 n n 
CAS H20 G6Y sing 143 n n 
CAT H21 G6Y sing 144 n n 
OBA H22 G6Y sing 145 n n 
CAV H23 G6Y sing 146 n n 
CAW H24 G6Y sing 147 n n 
#
_atom_sites.entry_id                     6DE4 
_atom_sites.fract_transf_matrix[1][1]    0.009559 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009555 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006928 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 201 201 NDP NDP . 
D 3 G6Y A 1 202 204 G6Y DRG . 
E 4 CL A 1 203 75 CL CL . 
F 5 GOL A 1 204 79 GOL GOL . 
G 5 GOL A 1 205 80 GOL GOL . 
H 6 EOH A 1 206 81 EOH EOH . 
I 6 EOH A 1 207 83 EOH EOH . 
J 2 NDP B 1 201 202 NDP NDP . 
K 3 G6Y B 1 202 205 G6Y DRG . 
L 7 CA B 1 203 73 CA CA . 
M 7 CA B 1 204 74 CA CA . 
N 4 CL B 1 205 76 CL CL . 
O 8 SO4 B 1 206 77 SO4 SO4 . 
P 8 SO4 B 1 207 78 SO4 SO4 . 
Q 6 EOH B 1 208 82 EOH EOH . 
R 6 EOH B 1 209 84 EOH EOH . 
S 9 HOH A 1 301 2 HOH HOH . 
S 9 HOH A 2 302 8 HOH HOH . 
S 9 HOH A 3 303 59 HOH HOH . 
S 9 HOH A 4 304 48 HOH HOH . 
S 9 HOH A 5 305 37 HOH HOH . 
S 9 HOH A 6 306 49 HOH HOH . 
S 9 HOH A 7 307 39 HOH HOH . 
S 9 HOH A 8 308 46 HOH HOH . 
S 9 HOH A 9 309 62 HOH HOH . 
S 9 HOH A 10 310 34 HOH HOH . 
S 9 HOH A 11 311 60 HOH HOH . 
S 9 HOH A 12 312 43 HOH HOH . 
S 9 HOH A 13 313 23 HOH HOH . 
S 9 HOH A 14 314 18 HOH HOH . 
S 9 HOH A 15 315 45 HOH HOH . 
S 9 HOH A 16 316 66 HOH HOH . 
S 9 HOH A 17 317 14 HOH HOH . 
S 9 HOH A 18 318 63 HOH HOH . 
S 9 HOH A 19 319 70 HOH HOH . 
S 9 HOH A 20 320 26 HOH HOH . 
S 9 HOH A 21 321 44 HOH HOH . 
S 9 HOH A 22 322 53 HOH HOH . 
S 9 HOH A 23 323 28 HOH HOH . 
S 9 HOH A 24 324 11 HOH HOH . 
S 9 HOH A 25 325 40 HOH HOH . 
S 9 HOH A 26 326 56 HOH HOH . 
S 9 HOH A 27 327 61 HOH HOH . 
S 9 HOH A 28 328 16 HOH HOH . 
S 9 HOH A 29 329 67 HOH HOH . 
S 9 HOH A 30 330 19 HOH HOH . 
S 9 HOH A 31 331 21 HOH HOH . 
S 9 HOH A 32 332 35 HOH HOH . 
S 9 HOH A 33 333 69 HOH HOH . 
S 9 HOH A 34 334 52 HOH HOH . 
S 9 HOH A 35 335 30 HOH HOH . 
S 9 HOH A 36 336 36 HOH HOH . 
S 9 HOH A 37 337 4 HOH HOH . 
T 9 HOH B 1 301 10 HOH HOH . 
T 9 HOH B 2 302 9 HOH HOH . 
T 9 HOH B 3 303 6 HOH HOH . 
T 9 HOH B 4 304 64 HOH HOH . 
T 9 HOH B 5 305 25 HOH HOH . 
T 9 HOH B 6 306 5 HOH HOH . 
T 9 HOH B 7 307 57 HOH HOH . 
T 9 HOH B 8 308 38 HOH HOH . 
T 9 HOH B 9 309 54 HOH HOH . 
T 9 HOH B 10 310 42 HOH HOH . 
T 9 HOH B 11 311 50 HOH HOH . 
T 9 HOH B 12 312 20 HOH HOH . 
T 9 HOH B 13 313 12 HOH HOH . 
T 9 HOH B 14 314 65 HOH HOH . 
T 9 HOH B 15 315 22 HOH HOH . 
T 9 HOH B 16 316 71 HOH HOH . 
T 9 HOH B 17 317 13 HOH HOH . 
T 9 HOH B 18 318 41 HOH HOH . 
T 9 HOH B 19 319 72 HOH HOH . 
T 9 HOH B 20 320 68 HOH HOH . 
T 9 HOH B 21 321 27 HOH HOH . 
T 9 HOH B 22 322 24 HOH HOH . 
T 9 HOH B 23 323 15 HOH HOH . 
T 9 HOH B 24 324 51 HOH HOH . 
T 9 HOH B 25 325 58 HOH HOH . 
T 9 HOH B 26 326 55 HOH HOH . 
T 9 HOH B 27 327 33 HOH HOH . 
T 9 HOH B 28 328 17 HOH HOH . 
T 9 HOH B 29 329 32 HOH HOH . 
T 9 HOH B 30 330 47 HOH HOH . 
T 9 HOH B 31 331 29 HOH HOH . 
T 9 HOH B 32 332 31 HOH HOH . 
T 9 HOH B 33 333 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 G6Y . . . K 3 40.32 -27.723 171.097 1 47.92 ? C4 G6Y 202 B 1 
HETATM 2 C C5 G6Y . . . K 3 39.958 -26.941 170.01 1 47.38 ? C5 G6Y 202 B 1 
HETATM 3 C C6 G6Y . . . K 3 40.951 -26.487 169.151 1 43.37 ? C6 G6Y 202 B 1 
HETATM 4 N N1 G6Y . . . K 3 42.233 -26.782 169.384 1 47.89 ? N1 G6Y 202 B 1 
HETATM 5 N N3 G6Y . . . K 3 41.618 -28.006 171.273 1 38.87 ? N3 G6Y 202 B 1 
HETATM 6 C CBE G6Y . . . K 3 39.62 -27.83 173.43 1 45.24 ? CBE G6Y 202 B 1 
HETATM 7 C CBD G6Y . . . K 3 39.331 -28.218 171.971 1 43.07 ? CBD G6Y 202 B 1 
HETATM 8 C C2 G6Y . . . K 3 42.562 -27.538 170.44 1 38.38 ? C2 G6Y 202 B 1 
HETATM 9 N NAG G6Y . . . K 3 43.847 -27.821 170.657 1 36.01 ? NAG G6Y 202 B 1 
HETATM 10 N NAH G6Y . . . K 3 40.579 -25.726 168.123 1 39.47 ? NAH G6Y 202 B 1 
HETATM 11 C CAI G6Y . . . K 3 38.586 -26.625 169.781 1 49.99 ? CAI G6Y 202 B 1 
HETATM 12 C CAJ G6Y . . . K 3 37.511 -26.366 169.58 1 55.98 ? CAJ G6Y 202 B 1 
HETATM 13 C CAK G6Y . . . K 3 36.133 -25.978 169.284 1 57.14 ? CAK G6Y 202 B 1 
HETATM 14 C CBC G6Y . . . K 3 36.082 -24.443 169.34 1 46.65 ? CBC G6Y 202 B 1 
HETATM 15 C CAL G6Y . . . K 3 35.241 -26.5 170.232 1 60.7 ? CAL G6Y 202 B 1 
HETATM 16 C CAM G6Y . . . K 3 35.092 -25.925 171.496 1 38.79 ? CAM G6Y 202 B 1 
HETATM 17 C CAQ G6Y . . . K 3 34.476 -27.606 169.881 1 67.45 ? CAQ G6Y 202 B 1 
HETATM 18 C CAP G6Y . . . K 3 33.57 -28.157 170.785 1 71.26 ? CAP G6Y 202 B 1 
HETATM 19 O OAX G6Y . . . K 3 32.831 -29.251 170.422 1 70.76 ? OAX G6Y 202 B 1 
HETATM 20 C CAY G6Y . . . K 3 31.909 -29.602 171.456 1 61.54 ? CAY G6Y 202 B 1 
HETATM 21 C CAO G6Y . . . K 3 33.43 -27.592 172.046 1 55.6 ? CAO G6Y 202 B 1 
HETATM 22 C CAN G6Y . . . K 3 34.18 -26.478 172.409 1 71.16 ? CAN G6Y 202 B 1 
HETATM 23 C CAR G6Y . . . K 3 34.003 -25.933 173.689 1 60.88 ? CAR G6Y 202 B 1 
HETATM 24 C CAS G6Y . . . K 3 33.639 -26.73 174.78 1 72.12 ? CAS G6Y 202 B 1 
HETATM 25 C CAT G6Y . . . K 3 33.472 -26.166 176.052 1 59.38 ? CAT G6Y 202 B 1 
HETATM 26 C CAU G6Y . . . K 3 33.662 -24.792 176.241 1 72.59 ? CAU G6Y 202 B 1 
HETATM 27 C CAZ G6Y . . . K 3 33.505 -24.202 177.507 1 90.78 ? CAZ G6Y 202 B 1 
HETATM 28 O OBB G6Y . . . K 3 33.801 -22.985 177.696 1 67.27 ? OBB G6Y 202 B 1 
HETATM 29 O OBA G6Y . . . K 3 33.087 -24.898 178.466 1 67.73 ? OBA G6Y 202 B 1 
HETATM 30 C CAV G6Y . . . K 3 34.021 -23.999 175.155 1 56.61 ? CAV G6Y 202 B 1 
HETATM 31 C CAW G6Y . . . K 3 34.188 -24.569 173.891 1 60.95 ? CAW G6Y 202 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           730 
_model_server_stats.encode_time_ms          26 
_model_server_stats.element_count           31 
#