data_6DE4
#
_model_server_result.job_id            JCueAPEBwa5nChQziPZYtw 
_model_server_result.datetime_utc      '2024-11-28 12:08:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6de4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":205}' 
#
_entry.id    6DE4 
#
_exptl.entry_id    6DE4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DE4 
_cell.length_a            104.611 
_cell.length_b            104.66 
_cell.length_c            144.333 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DE4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,S 1 1 
B,J,K,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 194 n n 
C1 C2 GOL sing 195 n n 
C1 H11 GOL sing 196 n n 
C1 H12 GOL sing 197 n n 
O1 HO1 GOL sing 198 n n 
C2 O2 GOL sing 199 n n 
C2 C3 GOL sing 200 n n 
C2 H2 GOL sing 201 n n 
O2 HO2 GOL sing 202 n n 
C3 O3 GOL sing 203 n n 
C3 H31 GOL sing 204 n n 
C3 H32 GOL sing 205 n n 
O3 HO3 GOL sing 206 n n 
#
_atom_sites.entry_id                     6DE4 
_atom_sites.fract_transf_matrix[1][1]    0.009559 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009555 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006928 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 201 201 NDP NDP . 
D 3 G6Y A 1 202 204 G6Y DRG . 
E 4 CL A 1 203 75 CL CL . 
F 5 GOL A 1 204 79 GOL GOL . 
G 5 GOL A 1 205 80 GOL GOL . 
H 6 EOH A 1 206 81 EOH EOH . 
I 6 EOH A 1 207 83 EOH EOH . 
J 2 NDP B 1 201 202 NDP NDP . 
K 3 G6Y B 1 202 205 G6Y DRG . 
L 7 CA B 1 203 73 CA CA . 
M 7 CA B 1 204 74 CA CA . 
N 4 CL B 1 205 76 CL CL . 
O 8 SO4 B 1 206 77 SO4 SO4 . 
P 8 SO4 B 1 207 78 SO4 SO4 . 
Q 6 EOH B 1 208 82 EOH EOH . 
R 6 EOH B 1 209 84 EOH EOH . 
S 9 HOH A 1 301 2 HOH HOH . 
S 9 HOH A 2 302 8 HOH HOH . 
S 9 HOH A 3 303 59 HOH HOH . 
S 9 HOH A 4 304 48 HOH HOH . 
S 9 HOH A 5 305 37 HOH HOH . 
S 9 HOH A 6 306 49 HOH HOH . 
S 9 HOH A 7 307 39 HOH HOH . 
S 9 HOH A 8 308 46 HOH HOH . 
S 9 HOH A 9 309 62 HOH HOH . 
S 9 HOH A 10 310 34 HOH HOH . 
S 9 HOH A 11 311 60 HOH HOH . 
S 9 HOH A 12 312 43 HOH HOH . 
S 9 HOH A 13 313 23 HOH HOH . 
S 9 HOH A 14 314 18 HOH HOH . 
S 9 HOH A 15 315 45 HOH HOH . 
S 9 HOH A 16 316 66 HOH HOH . 
S 9 HOH A 17 317 14 HOH HOH . 
S 9 HOH A 18 318 63 HOH HOH . 
S 9 HOH A 19 319 70 HOH HOH . 
S 9 HOH A 20 320 26 HOH HOH . 
S 9 HOH A 21 321 44 HOH HOH . 
S 9 HOH A 22 322 53 HOH HOH . 
S 9 HOH A 23 323 28 HOH HOH . 
S 9 HOH A 24 324 11 HOH HOH . 
S 9 HOH A 25 325 40 HOH HOH . 
S 9 HOH A 26 326 56 HOH HOH . 
S 9 HOH A 27 327 61 HOH HOH . 
S 9 HOH A 28 328 16 HOH HOH . 
S 9 HOH A 29 329 67 HOH HOH . 
S 9 HOH A 30 330 19 HOH HOH . 
S 9 HOH A 31 331 21 HOH HOH . 
S 9 HOH A 32 332 35 HOH HOH . 
S 9 HOH A 33 333 69 HOH HOH . 
S 9 HOH A 34 334 52 HOH HOH . 
S 9 HOH A 35 335 30 HOH HOH . 
S 9 HOH A 36 336 36 HOH HOH . 
S 9 HOH A 37 337 4 HOH HOH . 
T 9 HOH B 1 301 10 HOH HOH . 
T 9 HOH B 2 302 9 HOH HOH . 
T 9 HOH B 3 303 6 HOH HOH . 
T 9 HOH B 4 304 64 HOH HOH . 
T 9 HOH B 5 305 25 HOH HOH . 
T 9 HOH B 6 306 5 HOH HOH . 
T 9 HOH B 7 307 57 HOH HOH . 
T 9 HOH B 8 308 38 HOH HOH . 
T 9 HOH B 9 309 54 HOH HOH . 
T 9 HOH B 10 310 42 HOH HOH . 
T 9 HOH B 11 311 50 HOH HOH . 
T 9 HOH B 12 312 20 HOH HOH . 
T 9 HOH B 13 313 12 HOH HOH . 
T 9 HOH B 14 314 65 HOH HOH . 
T 9 HOH B 15 315 22 HOH HOH . 
T 9 HOH B 16 316 71 HOH HOH . 
T 9 HOH B 17 317 13 HOH HOH . 
T 9 HOH B 18 318 41 HOH HOH . 
T 9 HOH B 19 319 72 HOH HOH . 
T 9 HOH B 20 320 68 HOH HOH . 
T 9 HOH B 21 321 27 HOH HOH . 
T 9 HOH B 22 322 24 HOH HOH . 
T 9 HOH B 23 323 15 HOH HOH . 
T 9 HOH B 24 324 51 HOH HOH . 
T 9 HOH B 25 325 58 HOH HOH . 
T 9 HOH B 26 326 55 HOH HOH . 
T 9 HOH B 27 327 33 HOH HOH . 
T 9 HOH B 28 328 17 HOH HOH . 
T 9 HOH B 29 329 32 HOH HOH . 
T 9 HOH B 30 330 47 HOH HOH . 
T 9 HOH B 31 331 29 HOH HOH . 
T 9 HOH B 32 332 31 HOH HOH . 
T 9 HOH B 33 333 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 5 11.289 0.584 157.052 1 80.06 ? C1 GOL 205 A 1 
HETATM 2 O O1 GOL . . . G 5 10.77 1.809 156.583 1 81.02 ? O1 GOL 205 A 1 
HETATM 3 C C2 GOL . . . G 5 12.569 0.204 156.303 1 93.79 ? C2 GOL 205 A 1 
HETATM 4 O O2 GOL . . . G 5 13.515 1.259 156.346 1 94.76 ? O2 GOL 205 A 1 
HETATM 5 C C3 GOL . . . G 5 13.192 -1.034 156.949 1 83.68 ? C3 GOL 205 A 1 
HETATM 6 O O3 GOL . . . G 5 14.413 -1.336 156.309 1 83.04 ? O3 GOL 205 A 1 
HETATM 7 H H11 GOL . . . G 5 11.503 0.664 158.118 1 96.07 ? H11 GOL 205 A 1 
HETATM 8 H H12 GOL . . . G 5 10.544 -0.201 156.918 1 96.07 ? H12 GOL 205 A 1 
HETATM 9 H HO1 GOL . . . G 5 9.919 1.996 157.031 1 97.22 ? HO1 GOL 205 A 1 
HETATM 10 H H2 GOL . . . G 5 12.316 -0.028 155.268 1 112.55 ? H2 GOL 205 A 1 
HETATM 11 H HO2 GOL . . . G 5 13.757 1.442 157.277 1 113.71 ? HO2 GOL 205 A 1 
HETATM 12 H H31 GOL . . . G 5 13.367 -0.848 158.009 1 100.41 ? H31 GOL 205 A 1 
HETATM 13 H H32 GOL . . . G 5 12.51 -1.88 156.859 1 100.41 ? H32 GOL 205 A 1 
HETATM 14 H HO3 GOL . . . G 5 14.631 -2.281 156.448 1 99.65 ? HO3 GOL 205 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#