data_6DEC
#
_model_server_result.job_id            RfYQYiVIhvcRQZwvTO3ogg 
_model_server_result.datetime_utc      '2025-04-18 20:09:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dec 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":502}' 
#
_entry.id    6DEC 
#
_exptl.entry_id    6DEC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DEC 
_cell.length_a            179.84 
_cell.length_b            197.381 
_cell.length_c            202.067 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DEC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? octameric 8 author_defined_assembly 1 
? octameric 8 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,S,T,U,V 1 1 
I,J,K,L,M,N,O,P,W,X,Y,Z 2 1 
Q 3 1 
R 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 T N N 
? 12 V N N 
? 12 X N N 
? 12 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 S CA CA . A CA 501 1_555 T O2B ATP . A ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? 
metalc ? metalc2 S CA CA . A CA 501 1_555 T O2G ATP . A ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc3 U CA CA . B CA 501 1_555 V O2G ATP . B ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc4 U CA CA . B CA 501 1_555 V O2B ATP . B ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc5 W CA CA . H CA 501 1_555 X O1G ATP . H ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc6 W CA CA . H CA 501 1_555 X O1B ATP . H ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
metalc ? metalc7 Y CA CA . I CA 501 1_555 Z O2G ATP . I ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
metalc ? metalc8 Y CA CA . I CA 501 1_555 Z O1B ATP . I ATP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.174 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6DEC 
_atom_sites.fract_transf_matrix[1][1]    0.00556 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 11 CA A 1 501 501 CA CA . 
T 12 ATP A 1 502 502 ATP ATP . 
U 11 CA B 1 501 501 CA CA . 
V 12 ATP B 1 502 502 ATP ATP . 
W 11 CA H 1 501 501 CA CA . 
X 12 ATP H 1 502 502 ATP ATP . 
Y 11 CA I 1 501 501 CA CA . 
Z 12 ATP I 1 502 502 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . T 12 37.54 209.034 -5.008 1 113.33 ? PG ATP 502 A 1 
HETATM 2 O O1G ATP . . . T 12 37.714 207.642 -5.562 1 118.29 ? O1G ATP 502 A 1 
HETATM 3 O O2G ATP . . . T 12 36.871 209.081 -3.655 1 123.09 ? O2G ATP 502 A 1 
HETATM 4 O O3G ATP . . . T 12 38.776 209.891 -5.117 1 123.24 ? O3G ATP 502 A 1 
HETATM 5 P PB ATP . . . T 12 35.011 209.122 -6.205 1 115.04 ? PB ATP 502 A 1 
HETATM 6 O O1B ATP . . . T 12 34.146 210.171 -6.859 1 114.11 ? O1B ATP 502 A 1 
HETATM 7 O O2B ATP . . . T 12 34.559 208.473 -4.917 1 135.34 ? O2B ATP 502 A 1 
HETATM 8 O O3B ATP . . . T 12 36.491 209.727 -6.014 1 108.73 ? O3B ATP 502 A 1 
HETATM 9 P PA ATP . . . T 12 34.175 206.889 -7.673 1 116.96 ? PA ATP 502 A 1 
HETATM 10 O O1A ATP . . . T 12 32.819 207.493 -7.396 1 145.98 ? O1A ATP 502 A 1 
HETATM 11 O O2A ATP . . . T 12 34.55 205.603 -6.985 1 117.6 ? O2A ATP 502 A 1 
HETATM 12 O O3A ATP . . . T 12 35.304 207.962 -7.279 1 117.65 ? O3A ATP 502 A 1 
HETATM 13 O O5' ATP . . . T 12 34.383 206.683 -9.261 1 162.47 ? O5' ATP 502 A 1 
HETATM 14 C C5' ATP . . . T 12 34.27 207.753 -10.205 1 181.11 ? C5' ATP 502 A 1 
HETATM 15 C C4' ATP . . . T 12 34.75 207.287 -11.581 1 163.13 ? C4' ATP 502 A 1 
HETATM 16 O O4' ATP . . . T 12 34.063 206.097 -11.982 1 145.89 ? O4' ATP 502 A 1 
HETATM 17 C C3' ATP . . . T 12 34.52 208.317 -12.681 1 146.15 ? C3' ATP 502 A 1 
HETATM 18 O O3' ATP . . . T 12 35.761 208.886 -13.102 1 130.54 ? O3' ATP 502 A 1 
HETATM 19 C C2' ATP . . . T 12 33.924 207.558 -13.848 1 141.36 ? C2' ATP 502 A 1 
HETATM 20 O O2' ATP . . . T 12 34.792 207.658 -14.98 1 151.63 ? O2' ATP 502 A 1 
HETATM 21 C C1' ATP . . . T 12 33.825 206.112 -13.391 1 124.99 ? C1' ATP 502 A 1 
HETATM 22 N N9 ATP . . . T 12 32.476 205.579 -13.711 1 119.83 ? N9 ATP 502 A 1 
HETATM 23 C C8 ATP . . . T 12 31.329 206.285 -13.708 1 122.13 ? C8 ATP 502 A 1 
HETATM 24 N N7 ATP . . . T 12 30.271 205.506 -14.054 1 116.01 ? N7 ATP 502 A 1 
HETATM 25 C C5 ATP . . . T 12 30.742 204.268 -14.293 1 119.5 ? C5 ATP 502 A 1 
HETATM 26 C C6 ATP . . . T 12 30.163 202.963 -14.699 1 127.06 ? C6 ATP 502 A 1 
HETATM 27 N N6 ATP . . . T 12 28.834 202.821 -14.926 1 106.56 ? N6 ATP 502 A 1 
HETATM 28 N N1 ATP . . . T 12 31.008 201.917 -14.837 1 122.97 ? N1 ATP 502 A 1 
HETATM 29 C C2 ATP . . . T 12 32.331 202.041 -14.614 1 113.74 ? C2 ATP 502 A 1 
HETATM 30 N N3 ATP . . . T 12 32.922 203.193 -14.243 1 112.08 ? N3 ATP 502 A 1 
HETATM 31 C C4 ATP . . . T 12 32.196 204.324 -14.072 1 107.91 ? C4 ATP 502 A 1 
#
_model_server_stats.io_time_ms              87 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#