data_6DEK # _model_server_result.job_id t7fIgHHXsrHy2anVjw5ypw _model_server_result.datetime_utc '2024-11-25 06:37:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 6DEK # _exptl.entry_id 6DEK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6DEK _cell.length_a 176.039 _cell.length_b 176.039 _cell.length_c 177.626 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_785 -x+2,-y+3,z -1 0 0 0 -1 0 0 0 1 88.0195 457.362738 0 3 'crystal symmetry operation' 9_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 264.0585 152.454246 59.208667 4 'crystal symmetry operation' 12_575 x,x-y+2,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -176.039 304.908492 59.208667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 338 A GLN 339 1_555 C K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc2 A OD1 ASP 345 A ASP 346 1_555 C K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc3 A O GLN 501 A GLN 502 1_555 C K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc4 A O PHE 503 A PHE 504 1_555 C K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc5 A OD1 ASP 545 A ASP 546 1_555 D MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc6 A OD1 ASN 572 A ASN 573 1_555 D MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 A O GLU 574 A GLU 575 1_555 D MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc8 C K K . A K 702 1_555 F O HOH . A HOH 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc9 C K K . A K 702 1_555 F O HOH . A HOH 884 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc10 D MG MG . A MG 703 1_555 E O2A TPP . A TPP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc11 D MG MG . A MG 703 1_555 E O1B TPP . A TPP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc12 D MG MG . A MG 703 1_555 F O HOH . A HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DEK _atom_sites.fract_transf_matrix[1][1] 0.005681 _atom_sites.fract_transf_matrix[1][2] 0.00328 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 701 701 FAD FAD . C 3 K A 1 702 1696 K K . D 4 MG A 1 703 1699 MG MG . E 5 TPP A 1 704 1 TPP TPP . F 6 HOH A 1 801 37 HOH HOH . F 6 HOH A 2 802 71 HOH HOH . F 6 HOH A 3 803 66 HOH HOH . F 6 HOH A 4 804 85 HOH HOH . F 6 HOH A 5 805 61 HOH HOH . F 6 HOH A 6 806 41 HOH HOH . F 6 HOH A 7 807 73 HOH HOH . F 6 HOH A 8 808 55 HOH HOH . F 6 HOH A 9 809 84 HOH HOH . F 6 HOH A 10 810 38 HOH HOH . F 6 HOH A 11 811 28 HOH HOH . F 6 HOH A 12 812 65 HOH HOH . F 6 HOH A 13 813 20 HOH HOH . F 6 HOH A 14 814 1 HOH HOH . F 6 HOH A 15 815 60 HOH HOH . F 6 HOH A 16 816 13 HOH HOH . F 6 HOH A 17 817 32 HOH HOH . F 6 HOH A 18 818 77 HOH HOH . F 6 HOH A 19 819 56 HOH HOH . F 6 HOH A 20 820 59 HOH HOH . F 6 HOH A 21 821 19 HOH HOH . F 6 HOH A 22 822 2 HOH HOH . F 6 HOH A 23 823 76 HOH HOH . F 6 HOH A 24 824 9 HOH HOH . F 6 HOH A 25 825 17 HOH HOH . F 6 HOH A 26 826 34 HOH HOH . F 6 HOH A 27 827 44 HOH HOH . F 6 HOH A 28 828 15 HOH HOH . F 6 HOH A 29 829 75 HOH HOH . F 6 HOH A 30 830 3 HOH HOH . F 6 HOH A 31 831 11 HOH HOH . F 6 HOH A 32 832 52 HOH HOH . F 6 HOH A 33 833 7 HOH HOH . F 6 HOH A 34 834 67 HOH HOH . F 6 HOH A 35 835 68 HOH HOH . F 6 HOH A 36 836 25 HOH HOH . F 6 HOH A 37 837 91 HOH HOH . F 6 HOH A 38 838 53 HOH HOH . F 6 HOH A 39 839 23 HOH HOH . F 6 HOH A 40 840 81 HOH HOH . F 6 HOH A 41 841 6 HOH HOH . F 6 HOH A 42 842 43 HOH HOH . F 6 HOH A 43 843 64 HOH HOH . F 6 HOH A 44 844 42 HOH HOH . F 6 HOH A 45 845 57 HOH HOH . F 6 HOH A 46 846 22 HOH HOH . F 6 HOH A 47 847 16 HOH HOH . F 6 HOH A 48 848 48 HOH HOH . F 6 HOH A 49 849 78 HOH HOH . F 6 HOH A 50 850 8 HOH HOH . F 6 HOH A 51 851 80 HOH HOH . F 6 HOH A 52 852 40 HOH HOH . F 6 HOH A 53 853 63 HOH HOH . F 6 HOH A 54 854 24 HOH HOH . F 6 HOH A 55 855 47 HOH HOH . F 6 HOH A 56 856 4 HOH HOH . F 6 HOH A 57 857 27 HOH HOH . F 6 HOH A 58 858 54 HOH HOH . F 6 HOH A 59 859 21 HOH HOH . F 6 HOH A 60 860 50 HOH HOH . F 6 HOH A 61 861 33 HOH HOH . F 6 HOH A 62 862 72 HOH HOH . F 6 HOH A 63 863 29 HOH HOH . F 6 HOH A 64 864 49 HOH HOH . F 6 HOH A 65 865 70 HOH HOH . F 6 HOH A 66 866 79 HOH HOH . F 6 HOH A 67 867 69 HOH HOH . F 6 HOH A 68 868 31 HOH HOH . F 6 HOH A 69 869 51 HOH HOH . F 6 HOH A 70 870 88 HOH HOH . F 6 HOH A 71 871 89 HOH HOH . F 6 HOH A 72 872 62 HOH HOH . F 6 HOH A 73 873 26 HOH HOH . F 6 HOH A 74 874 14 HOH HOH . F 6 HOH A 75 875 82 HOH HOH . F 6 HOH A 76 876 83 HOH HOH . F 6 HOH A 77 877 35 HOH HOH . F 6 HOH A 78 878 86 HOH HOH . F 6 HOH A 79 879 18 HOH HOH . F 6 HOH A 80 880 74 HOH HOH . F 6 HOH A 81 881 90 HOH HOH . F 6 HOH A 82 882 45 HOH HOH . F 6 HOH A 83 883 87 HOH HOH . F 6 HOH A 84 884 30 HOH HOH . F 6 HOH A 85 885 36 HOH HOH . F 6 HOH A 86 886 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 77.718 _atom_site.Cartn_y 240.824 _atom_site.Cartn_z 45.019 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 703 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #