data_6DEX # _model_server_result.job_id TX1appGS6TnONgmGhgLTfw _model_server_result.datetime_utc '2024-11-05 00:20:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 6DEX # _exptl.entry_id 6DEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.29 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DEX _cell.length_a 37.252 _cell.length_b 83.909 _cell.length_c 107.082 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 96 A GLY 111 1_555 C MG MG . A MG 201 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc2 A O ARG 120 A ARG 135 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc3 C MG MG . A MG 201 1_555 F O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc4 C MG MG . A MG 201 1_555 F O HOH . A HOH 316 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc5 C MG MG . A MG 201 1_555 F O HOH . A HOH 317 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc6 C MG MG . A MG 201 1_555 F O HOH . A HOH 327 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc7 B SG CYS 100 B CYS 100 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc8 B SG CYS 102 B CYS 102 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc9 B SG CYS 154 B CYS 154 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc10 B ND1 HIS 156 B HIS 156 1_555 E ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? # _chem_comp.formula 'C8 H17 N O3 S' _chem_comp.formula_weight 207.29 _chem_comp.id NHE _chem_comp.mon_nstd_flag . _chem_comp.name '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-CYCLOHEXYLTAURINE;CHES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3' C2' NHE sing 237 n n C3' C4' NHE sing 238 n n C3' "H3'1" NHE sing 239 n n C3' "H3'2" NHE sing 240 n n C2' C1' NHE sing 241 n n C2' "H2'1" NHE sing 242 n n C2' "H2'2" NHE sing 243 n n C1' C6' NHE sing 244 n n C1' N NHE sing 245 n n C1' "HC'1" NHE sing 246 n n C6' C5' NHE sing 247 n n C6' "H6'1" NHE sing 248 n n C6' "H6'2" NHE sing 249 n n N C1 NHE sing 250 n n N HN NHE sing 251 n n C1 C2 NHE sing 252 n n C1 HC11 NHE sing 253 n n C1 HC12 NHE sing 254 n n C2 S NHE sing 255 n n C2 HC21 NHE sing 256 n n C2 HC22 NHE sing 257 n n S O1 NHE doub 258 n n S O2 NHE doub 259 n n S O3 NHE sing 260 n n O3 HO3 NHE sing 261 n n C5' C4' NHE sing 262 n n C5' "H5'1" NHE sing 263 n n C5' "H5'2" NHE sing 264 n n C4' "H4'1" NHE sing 265 n n C4' "H4'2" NHE sing 266 n n # _atom_sites.entry_id 6DEX _atom_sites.fract_transf_matrix[1][1] 0.026844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 201 1 MG MG . D 4 NHE A 1 202 1 NHE NHE . E 5 ZN B 1 301 2 ZN ZN . F 6 HOH A 1 301 12 HOH HOH . F 6 HOH A 2 302 73 HOH HOH . F 6 HOH A 3 303 29 HOH HOH . F 6 HOH A 4 304 18 HOH HOH . F 6 HOH A 5 305 67 HOH HOH . F 6 HOH A 6 306 69 HOH HOH . F 6 HOH A 7 307 44 HOH HOH . F 6 HOH A 8 308 75 HOH HOH . F 6 HOH A 9 309 7 HOH HOH . F 6 HOH A 10 310 34 HOH HOH . F 6 HOH A 11 311 124 HOH HOH . F 6 HOH A 12 312 61 HOH HOH . F 6 HOH A 13 313 17 HOH HOH . F 6 HOH A 14 314 72 HOH HOH . F 6 HOH A 15 315 1 HOH HOH . F 6 HOH A 16 316 11 HOH HOH . F 6 HOH A 17 317 35 HOH HOH . F 6 HOH A 18 318 4 HOH HOH . F 6 HOH A 19 319 118 HOH HOH . F 6 HOH A 20 320 20 HOH HOH . F 6 HOH A 21 321 83 HOH HOH . F 6 HOH A 22 322 2 HOH HOH . F 6 HOH A 23 323 91 HOH HOH . F 6 HOH A 24 324 9 HOH HOH . F 6 HOH A 25 325 74 HOH HOH . F 6 HOH A 26 326 88 HOH HOH . F 6 HOH A 27 327 114 HOH HOH . F 6 HOH A 28 328 78 HOH HOH . F 6 HOH A 29 329 121 HOH HOH . F 6 HOH A 30 330 96 HOH HOH . F 6 HOH A 31 331 119 HOH HOH . F 6 HOH A 32 332 25 HOH HOH . F 6 HOH A 33 333 64 HOH HOH . F 6 HOH A 34 334 101 HOH HOH . F 6 HOH A 35 335 50 HOH HOH . F 6 HOH A 36 336 97 HOH HOH . F 6 HOH A 37 337 47 HOH HOH . F 6 HOH A 38 338 82 HOH HOH . F 6 HOH A 39 339 90 HOH HOH . F 6 HOH A 40 340 60 HOH HOH . F 6 HOH A 41 341 95 HOH HOH . F 6 HOH A 42 342 117 HOH HOH . F 6 HOH A 43 343 92 HOH HOH . F 6 HOH A 44 344 98 HOH HOH . F 6 HOH A 45 345 93 HOH HOH . F 6 HOH A 46 346 125 HOH HOH . F 6 HOH A 47 347 104 HOH HOH . F 6 HOH A 48 348 94 HOH HOH . F 6 HOH A 49 349 106 HOH HOH . F 6 HOH A 50 350 89 HOH HOH . G 6 HOH B 1 401 79 HOH HOH . G 6 HOH B 2 402 126 HOH HOH . G 6 HOH B 3 403 3 HOH HOH . G 6 HOH B 4 404 77 HOH HOH . G 6 HOH B 5 405 24 HOH HOH . G 6 HOH B 6 406 28 HOH HOH . G 6 HOH B 7 407 33 HOH HOH . G 6 HOH B 8 408 13 HOH HOH . G 6 HOH B 9 409 43 HOH HOH . G 6 HOH B 10 410 10 HOH HOH . G 6 HOH B 11 411 14 HOH HOH . G 6 HOH B 12 412 31 HOH HOH . G 6 HOH B 13 413 81 HOH HOH . G 6 HOH B 14 414 15 HOH HOH . G 6 HOH B 15 415 54 HOH HOH . G 6 HOH B 16 416 65 HOH HOH . G 6 HOH B 17 417 70 HOH HOH . G 6 HOH B 18 418 49 HOH HOH . G 6 HOH B 19 419 21 HOH HOH . G 6 HOH B 20 420 23 HOH HOH . G 6 HOH B 21 421 41 HOH HOH . G 6 HOH B 22 422 112 HOH HOH . G 6 HOH B 23 423 6 HOH HOH . G 6 HOH B 24 424 62 HOH HOH . G 6 HOH B 25 425 19 HOH HOH . G 6 HOH B 26 426 123 HOH HOH . G 6 HOH B 27 427 37 HOH HOH . G 6 HOH B 28 428 76 HOH HOH . G 6 HOH B 29 429 5 HOH HOH . G 6 HOH B 30 430 52 HOH HOH . G 6 HOH B 31 431 85 HOH HOH . G 6 HOH B 32 432 32 HOH HOH . G 6 HOH B 33 433 115 HOH HOH . G 6 HOH B 34 434 22 HOH HOH . G 6 HOH B 35 435 66 HOH HOH . G 6 HOH B 36 436 84 HOH HOH . G 6 HOH B 37 437 122 HOH HOH . G 6 HOH B 38 438 53 HOH HOH . G 6 HOH B 39 439 86 HOH HOH . G 6 HOH B 40 440 120 HOH HOH . G 6 HOH B 41 441 105 HOH HOH . G 6 HOH B 42 442 8 HOH HOH . G 6 HOH B 43 443 110 HOH HOH . G 6 HOH B 44 444 102 HOH HOH . G 6 HOH B 45 445 116 HOH HOH . G 6 HOH B 46 446 100 HOH HOH . G 6 HOH B 47 447 111 HOH HOH . G 6 HOH B 48 448 113 HOH HOH . G 6 HOH B 49 449 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3' NHE . . . D 4 21.508 -6.994 -16.734 1 132.4 ? C3' NHE 202 A 1 HETATM 2 C C2' NHE . . . D 4 22.825 -6.487 -17.318 1 132.75 ? C2' NHE 202 A 1 HETATM 3 C C1' NHE . . . D 4 22.955 -4.991 -17.453 1 135.98 ? C1' NHE 202 A 1 HETATM 4 C C6' NHE . . . D 4 22.5 -4.208 -16.228 1 133.36 ? C6' NHE 202 A 1 HETATM 5 N N NHE . . . D 4 24.388 -4.625 -17.628 1 139 ? N NHE 202 A 1 HETATM 6 C C1 NHE . . . D 4 24.558 -4.277 -19.054 1 138.59 ? C1 NHE 202 A 1 HETATM 7 C C2 NHE . . . D 4 24.952 -5.501 -19.895 1 139.34 ? C2 NHE 202 A 1 HETATM 8 S S NHE . . . D 4 26.355 -5.076 -20.888 1 137.94 ? S NHE 202 A 1 HETATM 9 O O1 NHE . . . D 4 26.71 -3.674 -21.076 1 136.97 ? O1 NHE 202 A 1 HETATM 10 O O2 NHE . . . D 4 25.917 -4.961 -22.338 1 138.81 ? O2 NHE 202 A 1 HETATM 11 O O3 NHE . . . D 4 27.241 -6.316 -20.805 1 138.87 ? O3 NHE 202 A 1 HETATM 12 C C5' NHE . . . D 4 21.292 -4.795 -15.485 1 132.1 ? C5' NHE 202 A 1 HETATM 13 C C4' NHE . . . D 4 21.098 -6.308 -15.435 1 131.45 ? C4' NHE 202 A 1 HETATM 14 H "H3'1" NHE . . . D 4 21.596 -7.945 -16.562 1 158.88 ? "H3'1" NHE 202 A 1 HETATM 15 H "H3'2" NHE . . . D 4 20.808 -6.85 -17.389 1 158.88 ? "H3'2" NHE 202 A 1 HETATM 16 H "H2'1" NHE . . . D 4 22.927 -6.876 -18.201 1 159.31 ? "H2'1" NHE 202 A 1 HETATM 17 H "H2'2" NHE . . . D 4 23.544 -6.799 -16.746 1 159.31 ? "H2'2" NHE 202 A 1 HETATM 18 H "HC'1" NHE . . . D 4 22.418 -4.752 -18.224 1 163.17 ? "HC'1" NHE 202 A 1 HETATM 19 H "H6'1" NHE . . . D 4 22.27 -3.31 -16.514 1 160.03 ? "H6'1" NHE 202 A 1 HETATM 20 H "H6'2" NHE . . . D 4 23.243 -4.165 -15.606 1 160.03 ? "H6'2" NHE 202 A 1 HETATM 21 H HN NHE . . . D 4 24.917 -5.306 -17.405 1 166.8 ? HN NHE 202 A 1 HETATM 22 H HC11 NHE . . . D 4 23.722 -3.919 -19.392 1 166.31 ? HC11 NHE 202 A 1 HETATM 23 H HC12 NHE . . . D 4 25.252 -3.604 -19.133 1 166.31 ? HC12 NHE 202 A 1 HETATM 24 H HC21 NHE . . . D 4 25.178 -6.241 -19.309 1 167.21 ? HC21 NHE 202 A 1 HETATM 25 H HC22 NHE . . . D 4 24.212 -5.757 -20.467 1 167.21 ? HC22 NHE 202 A 1 HETATM 26 H "H5'1" NHE . . . D 4 20.498 -4.422 -15.899 1 158.52 ? "H5'1" NHE 202 A 1 HETATM 27 H "H5'2" NHE . . . D 4 21.348 -4.487 -14.567 1 158.52 ? "H5'2" NHE 202 A 1 HETATM 28 H "H4'1" NHE . . . D 4 20.162 -6.497 -15.265 1 157.73 ? "H4'1" NHE 202 A 1 HETATM 29 H "H4'2" NHE . . . D 4 21.634 -6.667 -14.71 1 157.73 ? "H4'2" NHE 202 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #