data_6DF6 # _model_server_result.job_id 87ysDWMKvwxc44NysRrrCQ _model_server_result.datetime_utc '2024-11-24 16:44:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6df6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":602}' # _entry.id 6DF6 # _exptl.entry_id 6DF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 79.75 _cell.angle_beta 75.42 _cell.angle_gamma 63.1 _cell.entry_id 6DF6 _cell.length_a 53.386 _cell.length_b 58.857 _cell.length_c 94.046 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 198 n n C1 C2 GOL sing 199 n n C1 H11 GOL sing 200 n n C1 H12 GOL sing 201 n n O1 HO1 GOL sing 202 n n C2 O2 GOL sing 203 n n C2 C3 GOL sing 204 n n C2 H2 GOL sing 205 n n O2 HO2 GOL sing 206 n n C3 O3 GOL sing 207 n n C3 H31 GOL sing 208 n n C3 H32 GOL sing 209 n n O3 HO3 GOL sing 210 n n # _atom_sites.entry_id 6DF6 _atom_sites.fract_transf_matrix[1][1] 0.018732 _atom_sites.fract_transf_matrix[1][2] -0.009502 _atom_sites.fract_transf_matrix[1][3] -0.00418 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019051 _atom_sites.fract_transf_matrix[2][3] -0.001417 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 G8Y A 1 601 1 G8Y DRG . F 2 G8Y B 1 601 2 G8Y DRG . G 3 GOL B 1 602 1 GOL GOL . H 2 G8Y C 1 601 3 G8Y DRG . I 2 G8Y D 1 601 4 G8Y DRG . J 3 GOL D 1 602 2 GOL GOL . K 4 HOH A 1 701 20 HOH HOH . K 4 HOH A 2 702 11 HOH HOH . K 4 HOH A 3 703 10 HOH HOH . K 4 HOH A 4 704 17 HOH HOH . K 4 HOH A 5 705 14 HOH HOH . K 4 HOH A 6 706 1 HOH HOH . L 4 HOH B 1 701 18 HOH HOH . L 4 HOH B 2 702 13 HOH HOH . L 4 HOH B 3 703 12 HOH HOH . L 4 HOH B 4 704 15 HOH HOH . L 4 HOH B 5 705 16 HOH HOH . L 4 HOH B 6 706 7 HOH HOH . M 4 HOH C 1 701 4 HOH HOH . M 4 HOH C 2 702 3 HOH HOH . M 4 HOH C 3 703 5 HOH HOH . N 4 HOH D 1 701 2 HOH HOH . N 4 HOH D 2 702 9 HOH HOH . N 4 HOH D 3 703 8 HOH HOH . N 4 HOH D 4 704 19 HOH HOH . N 4 HOH D 5 705 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 3 42.336 13.98 96.752 1 87.46 ? C1 GOL 602 D 1 HETATM 2 O O1 GOL . . . J 3 42.076 14.04 98.16 1 88.11 ? O1 GOL 602 D 1 HETATM 3 C C2 GOL . . . J 3 43.844 13.987 96.459 1 87.24 ? C2 GOL 602 D 1 HETATM 4 O O2 GOL . . . J 3 44.179 12.984 95.489 1 87.74 ? O2 GOL 602 D 1 HETATM 5 C C3 GOL . . . J 3 44.289 15.345 95.926 1 85.63 ? C3 GOL 602 D 1 HETATM 6 O O3 GOL . . . J 3 45.695 15.522 96.098 1 81.88 ? O3 GOL 602 D 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #