data_6DFC # _model_server_result.job_id '_RZlMmyPj1gIWUf9hKWGPw' _model_server_result.datetime_utc '2024-11-25 20:19:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dfc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 6DFC # _exptl.entry_id 6DFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DFC _cell.length_a 44.24 _cell.length_b 184.451 _cell.length_c 104.705 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 26 A CYS 496 1_555 D ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A SG CYS 29 A CYS 499 1_555 D ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc3 A NE2 HIS 42 A HIS 512 1_555 D ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc4 A NE2 HIS 46 A HIS 516 1_555 D ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc5 A SG CYS 54 A CYS 524 1_555 E ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc6 A SG CYS 57 A CYS 527 1_555 E ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc7 A NE2 HIS 70 A HIS 540 1_555 E ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc8 A NE2 HIS 74 A HIS 544 1_555 E ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc9 A SG CYS 82 A CYS 552 1_555 F ZN ZN . A ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc10 A SG CYS 85 A CYS 555 1_555 F ZN ZN . A ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc11 A NE2 HIS 98 A HIS 568 1_555 F ZN ZN . A ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc12 A NE2 HIS 103 A HIS 573 1_555 F ZN ZN . A ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? hydrog WATSON-CRICK hydrog1 B N3 DT 1 D DT 1 1_555 C N1 DA 18 E DA 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B O4 DT 1 D DT 1 1_555 C N6 DA 18 E DA 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DG 2 D DG 2 1_555 C N3 DC 17 E DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N2 DG 2 D DG 2 1_555 C O2 DC 17 E DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O6 DG 2 D DG 2 1_555 C N4 DC 17 E DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DC 3 D DC 3 1_555 C N1 DG 16 E DG 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N4 DC 3 D DC 3 1_555 C O6 DG 16 E DG 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O2 DC 3 D DC 3 1_555 C N2 DG 16 E DG 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DT 4 D DT 4 1_555 C N1 DA 15 E DA 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O4 DT 4 D DT 4 1_555 C N6 DA 15 E DA 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DT 5 D DT 5 1_555 C N1 DA 14 E DA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O4 DT 5 D DT 5 1_555 C N6 DA 14 E DA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 DC 6 D DC 6 1_555 C N1 DG 13 E DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N4 DC 6 D DC 6 1_555 C O6 DG 13 E DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O2 DC 6 D DC 6 1_555 C N2 DG 13 E DG 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DU 7 D DU 7 1_555 C N1 DA 12 E DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O4 DU 7 D DU 7 1_555 C N6 DA 12 E DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DT 8 D DT 8 1_555 C N1 DA 11 E DA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O4 DT 8 D DT 8 1_555 C N6 DA 11 E DA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 DG 9 D DG 9 1_555 C N3 DC 10 E DC 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N2 DG 9 D DG 9 1_555 C O2 DC 10 E DC 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O6 DG 9 D DG 9 1_555 C N4 DC 10 E DC 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N3 DC 10 D DC 10 1_555 C N1 DG 9 E DG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N4 DC 10 D DC 10 1_555 C O6 DG 9 E DG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O2 DC 10 D DC 10 1_555 C N2 DG 9 E DG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N3 DC 11 D DC 11 1_555 C N1 DG 8 E DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N4 DC 11 D DC 11 1_555 C O6 DG 8 E DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O2 DC 11 D DC 11 1_555 C N2 DG 8 E DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N1 DA 12 D DA 12 1_555 C N3 DT 7 E DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N6 DA 12 D DA 12 1_555 C O4 DT 7 E DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N1 DA 13 D DA 13 1_555 C N3 DT 6 E DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B N6 DA 13 D DA 13 1_555 C O4 DT 6 E DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N3 DT 14 D DT 14 1_555 C N1 DA 5 E DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B O4 DT 14 D DT 14 1_555 C N6 DA 5 E DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B N1 DA 15 D DA 15 1_555 C N3 DT 4 E DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 B N6 DA 15 D DA 15 1_555 C O4 DT 4 E DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 B N1 DA 16 D DA 16 1_555 C N3 DT 3 E DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 B N6 DA 16 D DA 16 1_555 C O4 DT 3 E DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 B N3 DC 17 D DC 17 1_555 C N1 DG 2 E DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 B N4 DC 17 D DC 17 1_555 C O6 DG 2 E DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 B O2 DC 17 D DC 17 1_555 C N2 DG 2 E DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 B N1 DG 18 D DG 18 1_555 C N3 DC 1 E DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 B N2 DG 18 D DG 18 1_555 C O2 DC 1 E DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 B O6 DG 18 D DG 18 1_555 C N4 DC 1 E DC 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DFC _atom_sites.fract_transf_matrix[1][1] 0.022604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 701 701 ZN ZN . E 4 ZN A 1 702 702 ZN ZN . F 4 ZN A 1 703 703 ZN ZN . G 5 CL A 1 704 1 CL CL . H 6 HOH A 1 801 56 HOH HOH . H 6 HOH A 2 802 27 HOH HOH . H 6 HOH A 3 803 21 HOH HOH . H 6 HOH A 4 804 48 HOH HOH . H 6 HOH A 5 805 8 HOH HOH . H 6 HOH A 6 806 29 HOH HOH . H 6 HOH A 7 807 33 HOH HOH . H 6 HOH A 8 808 12 HOH HOH . H 6 HOH A 9 809 1 HOH HOH . H 6 HOH A 10 810 30 HOH HOH . H 6 HOH A 11 811 2 HOH HOH . H 6 HOH A 12 812 83 HOH HOH . H 6 HOH A 13 813 22 HOH HOH . H 6 HOH A 14 814 81 HOH HOH . H 6 HOH A 15 815 38 HOH HOH . H 6 HOH A 16 816 84 HOH HOH . H 6 HOH A 17 817 7 HOH HOH . H 6 HOH A 18 818 36 HOH HOH . H 6 HOH A 19 819 40 HOH HOH . H 6 HOH A 20 820 60 HOH HOH . H 6 HOH A 21 821 3 HOH HOH . H 6 HOH A 22 822 24 HOH HOH . H 6 HOH A 23 823 70 HOH HOH . H 6 HOH A 24 824 82 HOH HOH . H 6 HOH A 25 825 67 HOH HOH . H 6 HOH A 26 826 87 HOH HOH . H 6 HOH A 27 827 16 HOH HOH . H 6 HOH A 28 828 58 HOH HOH . H 6 HOH A 29 829 19 HOH HOH . H 6 HOH A 30 830 4 HOH HOH . H 6 HOH A 31 831 64 HOH HOH . H 6 HOH A 32 832 13 HOH HOH . H 6 HOH A 33 833 41 HOH HOH . H 6 HOH A 34 834 79 HOH HOH . H 6 HOH A 35 835 9 HOH HOH . H 6 HOH A 36 836 17 HOH HOH . H 6 HOH A 37 837 49 HOH HOH . H 6 HOH A 38 838 57 HOH HOH . H 6 HOH A 39 839 26 HOH HOH . H 6 HOH A 40 840 73 HOH HOH . H 6 HOH A 41 841 25 HOH HOH . H 6 HOH A 42 842 55 HOH HOH . H 6 HOH A 43 843 37 HOH HOH . H 6 HOH A 44 844 54 HOH HOH . H 6 HOH A 45 845 86 HOH HOH . H 6 HOH A 46 846 42 HOH HOH . H 6 HOH A 47 847 69 HOH HOH . H 6 HOH A 48 848 77 HOH HOH . H 6 HOH A 49 849 75 HOH HOH . H 6 HOH A 50 850 18 HOH HOH . I 6 HOH D 1 101 11 HOH HOH . I 6 HOH D 2 102 32 HOH HOH . I 6 HOH D 3 103 35 HOH HOH . I 6 HOH D 4 104 10 HOH HOH . I 6 HOH D 5 105 66 HOH HOH . I 6 HOH D 6 106 39 HOH HOH . I 6 HOH D 7 107 90 HOH HOH . I 6 HOH D 8 108 62 HOH HOH . I 6 HOH D 9 109 61 HOH HOH . I 6 HOH D 10 110 76 HOH HOH . I 6 HOH D 11 111 80 HOH HOH . I 6 HOH D 12 112 92 HOH HOH . I 6 HOH D 13 113 85 HOH HOH . I 6 HOH D 14 114 43 HOH HOH . J 6 HOH E 1 101 23 HOH HOH . J 6 HOH E 2 102 44 HOH HOH . J 6 HOH E 3 103 53 HOH HOH . J 6 HOH E 4 104 15 HOH HOH . J 6 HOH E 5 105 34 HOH HOH . J 6 HOH E 6 106 46 HOH HOH . J 6 HOH E 7 107 89 HOH HOH . J 6 HOH E 8 108 65 HOH HOH . J 6 HOH E 9 109 31 HOH HOH . J 6 HOH E 10 110 20 HOH HOH . J 6 HOH E 11 111 14 HOH HOH . J 6 HOH E 12 112 28 HOH HOH . J 6 HOH E 13 113 88 HOH HOH . J 6 HOH E 14 114 5 HOH HOH . J 6 HOH E 15 115 6 HOH HOH . J 6 HOH E 16 116 59 HOH HOH . J 6 HOH E 17 117 50 HOH HOH . J 6 HOH E 18 118 72 HOH HOH . J 6 HOH E 19 119 74 HOH HOH . J 6 HOH E 20 120 63 HOH HOH . J 6 HOH E 21 121 45 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 20.839 _atom_site.Cartn_y 216.853 _atom_site.Cartn_z 140.397 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 702 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #