data_6DFL # _model_server_result.job_id 3lWf3fObEXwiND-ZLnnp6w _model_server_result.datetime_utc '2025-03-04 06:20:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dfl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 6DFL # _exptl.entry_id 6DFL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 596.757 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] hexadecanethioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6DFL _cell.length_a 92.023 _cell.length_b 92.023 _cell.length_c 99.172 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DFL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ARG 2 A ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C THR 92 A THR 92 1_555 A N MSE 93 A MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C MSE 93 A MSE 93 1_555 A N THR 94 A THR 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 A C ARG 149 A ARG 149 1_555 A N MSE 150 A MSE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 150 A MSE 150 1_555 A N VAL 151 A VAL 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C ASP 153 A ASP 153 1_555 A N MSE 154 A MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 154 A MSE 154 1_555 A N HIS 155 A HIS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 A C TRP 249 A TRP 249 1_555 A N MSE 250 A MSE 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C MSE 250 A MSE 250 1_555 A N GLU 251 A GLU 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B OG SER 35 B SER 36 1_555 C P1 G9S . B G9S 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.561 ? covale ? covale11 B C VAL 42 B VAL 43 1_555 B N MSE 43 B MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 B C MSE 43 B MSE 44 1_555 B N ALA 44 B ALA 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C27 H53 N2 O8 P S' _chem_comp.formula_weight 596.757 _chem_comp.id G9S _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] hexadecanethioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 P1 G9S doub 83 n n P1 O8 G9S sing 84 n n P1 O6 G9S sing 85 n n O6 C7 G9S sing 86 n n C7 C6 G9S sing 87 n n C20 C6 G9S sing 88 n n C6 C8 G9S sing 89 n n C6 C30 G9S sing 90 n n C30 O5 G9S sing 91 n n C30 C5 G9S sing 92 n n O4 C5 G9S doub 93 n n C5 N3 G9S sing 94 n n N3 C4 G9S sing 95 n n O2 C2 G9S doub 96 n n C4 C3 G9S sing 97 n n C2 C3 G9S sing 98 n n C2 N2 G9S sing 99 n n C1 N2 G9S sing 100 n n C1 C19 G9S sing 101 n n C19 S1 G9S sing 102 n n O3 C10 G9S doub 103 n n C10 S1 G9S sing 104 n n C10 C11 G9S sing 105 n n C14 C13 G9S sing 106 n n C14 C15 G9S sing 107 n n C11 C12 G9S sing 108 n n C13 C12 G9S sing 109 n n C15 C16 G9S sing 110 n n C16 C21 G9S sing 111 n n C21 C22 G9S sing 112 n n C22 C23 G9S sing 113 n n C24 C23 G9S sing 114 n n C24 C25 G9S sing 115 n n C26 C25 G9S sing 116 n n C26 C27 G9S sing 117 n n C28 C27 G9S sing 118 n n C28 C29 G9S sing 119 n n P1 O1 G9S sing 120 n n C1 H1 G9S sing 121 n n C1 H2 G9S sing 122 n n C3 H3 G9S sing 123 n n C3 H4 G9S sing 124 n n C4 H5 G9S sing 125 n n C4 H6 G9S sing 126 n n C7 H7 G9S sing 127 n n C7 H8 G9S sing 128 n n C8 H9 G9S sing 129 n n C8 H10 G9S sing 130 n n C8 H11 G9S sing 131 n n C11 H12 G9S sing 132 n n C11 H13 G9S sing 133 n n C12 H14 G9S sing 134 n n C12 H15 G9S sing 135 n n C13 H16 G9S sing 136 n n C13 H17 G9S sing 137 n n C14 H18 G9S sing 138 n n C14 H19 G9S sing 139 n n C15 H20 G9S sing 140 n n C15 H21 G9S sing 141 n n C16 H22 G9S sing 142 n n C16 H23 G9S sing 143 n n N2 H24 G9S sing 144 n n C19 H25 G9S sing 145 n n C19 H26 G9S sing 146 n n C20 H27 G9S sing 147 n n C20 H28 G9S sing 148 n n C20 H29 G9S sing 149 n n C21 H30 G9S sing 150 n n C21 H31 G9S sing 151 n n C22 H32 G9S sing 152 n n C22 H33 G9S sing 153 n n C23 H34 G9S sing 154 n n C24 H35 G9S sing 155 n n C25 H36 G9S sing 156 n n C25 H37 G9S sing 157 n n C26 H38 G9S sing 158 n n C27 H39 G9S sing 159 n n C28 H40 G9S sing 160 n n C28 H41 G9S sing 161 n n C29 H42 G9S sing 162 n n C29 H43 G9S sing 163 n n C29 H44 G9S sing 164 n n C30 H45 G9S sing 165 n n N3 H46 G9S sing 166 n n O5 H47 G9S sing 167 n n O8 H48 G9S sing 168 n n O1 H49 G9S sing 169 n n C23 H50 G9S sing 170 n n C24 H51 G9S sing 171 n n C26 H52 G9S sing 172 n n C27 H53 G9S sing 173 n n # _atom_sites.entry_id 6DFL _atom_sites.fract_transf_matrix[1][1] 0.010867 _atom_sites.fract_transf_matrix[1][2] 0.006274 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id G9S _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 36 _pdbx_nonpoly_scheme.pdb_mon_id G9S _pdbx_nonpoly_scheme.auth_mon_id SPP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G9S . . . C 3 -50.371 33.564 26.342 1 96.03 ? C1 G9S 101 B 1 HETATM 2 C C2 G9S . . . C 3 -50.866 36.031 26.195 1 109.13 ? C2 G9S 101 B 1 HETATM 3 C C3 G9S . . . C 3 -51.806 37.194 26.471 1 111.08 ? C3 G9S 101 B 1 HETATM 4 C C4 G9S . . . C 3 -53.174 37.107 25.819 1 116.95 ? C4 G9S 101 B 1 HETATM 5 C C5 G9S . . . C 3 -54.213 35.319 24.195 1 117.64 ? C5 G9S 101 B 1 HETATM 6 C C6 G9S . . . C 3 -53.348 36.347 21.9 1 119.12 ? C6 G9S 101 B 1 HETATM 7 C C7 G9S . . . C 3 -53.874 37.279 20.835 1 119.25 ? C7 G9S 101 B 1 HETATM 8 C C8 G9S . . . C 3 -52.046 36.887 22.429 1 114.71 ? C8 G9S 101 B 1 HETATM 9 C C10 G9S . . . C 3 -50.279 31.127 28.853 1 88.62 ? C10 G9S 101 B 1 HETATM 10 C C11 G9S . . . C 3 -50.722 30.396 30.089 1 73.81 ? C11 G9S 101 B 1 HETATM 11 C C12 G9S . . . C 3 -49.615 29.713 30.858 1 70.07 ? C12 G9S 101 B 1 HETATM 12 C C13 G9S . . . C 3 -48.208 29.972 30.349 1 70.89 ? C13 G9S 101 B 1 HETATM 13 C C14 G9S . . . C 3 -47.442 28.751 29.821 1 70.28 ? C14 G9S 101 B 1 HETATM 14 C C15 G9S . . . C 3 -46.421 28.119 30.754 1 68.53 ? C15 G9S 101 B 1 HETATM 15 C C16 G9S . . . C 3 -45.092 28.817 30.923 1 57.82 ? C16 G9S 101 B 1 HETATM 16 N N2 G9S . . . C 3 -51.243 34.683 26.593 1 106.12 ? N2 G9S 101 B 1 HETATM 17 C C19 G9S . . . C 3 -49.293 33.313 27.366 1 86.55 ? C19 G9S 101 B 1 HETATM 18 C C20 G9S . . . C 3 -53.133 35.006 21.267 1 110.19 ? C20 G9S 101 B 1 HETATM 19 C C21 G9S . . . C 3 -43.878 27.973 31.298 1 54.99 ? C21 G9S 101 B 1 HETATM 20 C C22 G9S . . . C 3 -42.763 28.752 31.99 1 60.84 ? C22 G9S 101 B 1 HETATM 21 C C23 G9S . . . C 3 -41.721 27.992 32.757 1 64.59 ? C23 G9S 101 B 1 HETATM 22 C C24 G9S . . . C 3 -40.293 28.17 32.285 1 63.86 ? C24 G9S 101 B 1 HETATM 23 C C25 G9S . . . C 3 -39.144 27.637 33.132 1 64.52 ? C25 G9S 101 B 1 HETATM 24 C C26 G9S . . . C 3 -37.759 28.258 32.926 1 66.81 ? C26 G9S 101 B 1 HETATM 25 C C27 G9S . . . C 3 -37.403 29.46 33.781 1 74.49 ? C27 G9S 101 B 1 HETATM 26 C C28 G9S . . . C 3 -35.966 29.887 33.749 1 76.23 ? C28 G9S 101 B 1 HETATM 27 C C29 G9S . . . C 3 -35.195 29.832 35.03 1 68.9 ? C29 G9S 101 B 1 HETATM 28 C C30 G9S . . . C 3 -54.442 36.273 23.014 1 119.78 ? C30 G9S 101 B 1 HETATM 29 N N3 G9S . . . C 3 -53.635 35.737 25.481 1 120.68 ? N3 G9S 101 B 1 HETATM 30 O O2 G9S . . . C 3 -49.799 36.229 25.624 1 103.01 ? O2 G9S 101 B 1 HETATM 31 O O3 G9S . . . C 3 -50.364 30.624 27.739 1 84.58 ? O3 G9S 101 B 1 HETATM 32 O O4 G9S . . . C 3 -54.541 34.143 24.069 1 116.23 ? O4 G9S 101 B 1 HETATM 33 O O5 G9S . . . C 3 -54.808 37.519 23.486 1 120.96 ? O5 G9S 101 B 1 HETATM 34 O O6 G9S . . . C 3 -55.256 37.294 20.662 1 125.29 ? O6 G9S 101 B 1 HETATM 35 O O8 G9S . . . C 3 -57.32 37.976 19.375 1 125.39 ? O8 G9S 101 B 1 HETATM 36 O O9 G9S . . . C 3 -55.783 36.245 18.403 1 119.07 ? O9 G9S 101 B 1 HETATM 37 P P1 G9S . . . C 3 -55.887 37.505 19.238 1 123.95 ? P1 G9S 101 B 1 HETATM 38 S S1 G9S . . . C 3 -49.881 32.851 28.989 1 107.03 ? S1 G9S 101 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 38 #