data_6DFN # _model_server_result.job_id USKFqQmNJCtNEheTIOtphA _model_server_result.datetime_utc '2024-11-24 18:00:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dfn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 6DFN # _exptl.entry_id 6DFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 86.05 _cell.angle_beta 74.92 _cell.angle_gamma 63.34 _cell.entry_id 6DFN _cell.length_a 53.089 _cell.length_b 59.134 _cell.length_c 94.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,O,P 1 1 C,D,K,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DFN _atom_sites.fract_transf_matrix[1][1] 0.018836 _atom_sites.fract_transf_matrix[1][2] -0.009456 _atom_sites.fract_transf_matrix[1][3] -0.005607 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018922 _atom_sites.fract_transf_matrix[2][3] 0.00105 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 G9J A 1 601 1 G9J RRG . F 3 NI A 1 602 1 NI NI . G 4 G91 B 1 601 1 G91 DRG . H 2 G9J B 1 602 1 G9J RRG . I 5 GOL B 1 603 2 GOL GOL . J 5 GOL B 1 604 3 GOL GOL . K 2 G9J C 1 601 2 G9J RRG . L 2 G9J D 1 601 3 G9J RRG . M 4 G91 D 1 602 2 G91 DRG . N 5 GOL D 1 603 1 GOL GOL . O 6 HOH A 1 701 8 HOH HOH . O 6 HOH A 2 702 31 HOH HOH . O 6 HOH A 3 703 27 HOH HOH . O 6 HOH A 4 704 10 HOH HOH . O 6 HOH A 5 705 34 HOH HOH . O 6 HOH A 6 706 4 HOH HOH . O 6 HOH A 7 707 7 HOH HOH . O 6 HOH A 8 708 25 HOH HOH . O 6 HOH A 9 709 35 HOH HOH . O 6 HOH A 10 710 6 HOH HOH . O 6 HOH A 11 711 2 HOH HOH . O 6 HOH A 12 712 33 HOH HOH . O 6 HOH A 13 713 45 HOH HOH . O 6 HOH A 14 714 5 HOH HOH . O 6 HOH A 15 715 36 HOH HOH . O 6 HOH A 16 716 44 HOH HOH . P 6 HOH B 1 701 29 HOH HOH . P 6 HOH B 2 702 23 HOH HOH . P 6 HOH B 3 703 12 HOH HOH . P 6 HOH B 4 704 24 HOH HOH . P 6 HOH B 5 705 1 HOH HOH . P 6 HOH B 6 706 28 HOH HOH . P 6 HOH B 7 707 9 HOH HOH . P 6 HOH B 8 708 30 HOH HOH . P 6 HOH B 9 709 11 HOH HOH . Q 6 HOH C 1 701 14 HOH HOH . Q 6 HOH C 2 702 43 HOH HOH . Q 6 HOH C 3 703 47 HOH HOH . Q 6 HOH C 4 704 46 HOH HOH . Q 6 HOH C 5 705 13 HOH HOH . Q 6 HOH C 6 706 42 HOH HOH . Q 6 HOH C 7 707 37 HOH HOH . Q 6 HOH C 8 708 26 HOH HOH . Q 6 HOH C 9 709 16 HOH HOH . Q 6 HOH C 10 710 17 HOH HOH . R 6 HOH D 1 701 39 HOH HOH . R 6 HOH D 2 702 40 HOH HOH . R 6 HOH D 3 703 21 HOH HOH . R 6 HOH D 4 704 19 HOH HOH . R 6 HOH D 5 705 41 HOH HOH . R 6 HOH D 6 706 18 HOH HOH . R 6 HOH D 7 707 38 HOH HOH . R 6 HOH D 8 708 20 HOH HOH . R 6 HOH D 9 709 22 HOH HOH . R 6 HOH D 10 710 15 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -40.385 _atom_site.Cartn_y -12.95 _atom_site.Cartn_z -35.848 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 159.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #