data_6DFN
#
_model_server_result.job_id            AoZIom1139n-nD7lt2tC5Q 
_model_server_result.datetime_utc      '2024-11-24 18:01:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dfn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":603}' 
#
_entry.id    6DFN 
#
_exptl.entry_id    6DFN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         86.05 
_cell.angle_beta          74.92 
_cell.angle_gamma         63.34 
_cell.entry_id            6DFN 
_cell.length_a            53.089 
_cell.length_b            59.134 
_cell.length_c            94.18 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DFN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,O,P 1 1 
C,D,K,L,M,N,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 N N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 244 n n 
C1 C2 GOL sing 245 n n 
C1 H11 GOL sing 246 n n 
C1 H12 GOL sing 247 n n 
O1 HO1 GOL sing 248 n n 
C2 O2 GOL sing 249 n n 
C2 C3 GOL sing 250 n n 
C2 H2 GOL sing 251 n n 
O2 HO2 GOL sing 252 n n 
C3 O3 GOL sing 253 n n 
C3 H31 GOL sing 254 n n 
C3 H32 GOL sing 255 n n 
O3 HO3 GOL sing 256 n n 
#
_atom_sites.entry_id                     6DFN 
_atom_sites.fract_transf_matrix[1][1]    0.018836 
_atom_sites.fract_transf_matrix[1][2]    -0.009456 
_atom_sites.fract_transf_matrix[1][3]    -0.005607 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018922 
_atom_sites.fract_transf_matrix[2][3]    0.00105 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011013 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 G9J A 1 601 1 G9J RRG . 
F 3 NI A 1 602 1 NI NI . 
G 4 G91 B 1 601 1 G91 DRG . 
H 2 G9J B 1 602 1 G9J RRG . 
I 5 GOL B 1 603 2 GOL GOL . 
J 5 GOL B 1 604 3 GOL GOL . 
K 2 G9J C 1 601 2 G9J RRG . 
L 2 G9J D 1 601 3 G9J RRG . 
M 4 G91 D 1 602 2 G91 DRG . 
N 5 GOL D 1 603 1 GOL GOL . 
O 6 HOH A 1 701 8 HOH HOH . 
O 6 HOH A 2 702 31 HOH HOH . 
O 6 HOH A 3 703 27 HOH HOH . 
O 6 HOH A 4 704 10 HOH HOH . 
O 6 HOH A 5 705 34 HOH HOH . 
O 6 HOH A 6 706 4 HOH HOH . 
O 6 HOH A 7 707 7 HOH HOH . 
O 6 HOH A 8 708 25 HOH HOH . 
O 6 HOH A 9 709 35 HOH HOH . 
O 6 HOH A 10 710 6 HOH HOH . 
O 6 HOH A 11 711 2 HOH HOH . 
O 6 HOH A 12 712 33 HOH HOH . 
O 6 HOH A 13 713 45 HOH HOH . 
O 6 HOH A 14 714 5 HOH HOH . 
O 6 HOH A 15 715 36 HOH HOH . 
O 6 HOH A 16 716 44 HOH HOH . 
P 6 HOH B 1 701 29 HOH HOH . 
P 6 HOH B 2 702 23 HOH HOH . 
P 6 HOH B 3 703 12 HOH HOH . 
P 6 HOH B 4 704 24 HOH HOH . 
P 6 HOH B 5 705 1 HOH HOH . 
P 6 HOH B 6 706 28 HOH HOH . 
P 6 HOH B 7 707 9 HOH HOH . 
P 6 HOH B 8 708 30 HOH HOH . 
P 6 HOH B 9 709 11 HOH HOH . 
Q 6 HOH C 1 701 14 HOH HOH . 
Q 6 HOH C 2 702 43 HOH HOH . 
Q 6 HOH C 3 703 47 HOH HOH . 
Q 6 HOH C 4 704 46 HOH HOH . 
Q 6 HOH C 5 705 13 HOH HOH . 
Q 6 HOH C 6 706 42 HOH HOH . 
Q 6 HOH C 7 707 37 HOH HOH . 
Q 6 HOH C 8 708 26 HOH HOH . 
Q 6 HOH C 9 709 16 HOH HOH . 
Q 6 HOH C 10 710 17 HOH HOH . 
R 6 HOH D 1 701 39 HOH HOH . 
R 6 HOH D 2 702 40 HOH HOH . 
R 6 HOH D 3 703 21 HOH HOH . 
R 6 HOH D 4 704 19 HOH HOH . 
R 6 HOH D 5 705 41 HOH HOH . 
R 6 HOH D 6 706 18 HOH HOH . 
R 6 HOH D 7 707 38 HOH HOH . 
R 6 HOH D 8 708 20 HOH HOH . 
R 6 HOH D 9 709 22 HOH HOH . 
R 6 HOH D 10 710 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . N 5 -70.97 31.034 -99.999 1 68.94 ? C1 GOL 603 D 1 
HETATM 2 O O1 GOL . . . N 5 -70.083 31.267 -101.1 1 69.04 ? O1 GOL 603 D 1 
HETATM 3 C C2 GOL . . . N 5 -71.98 32.173 -99.845 1 67.42 ? C2 GOL 603 D 1 
HETATM 4 O O2 GOL . . . N 5 -72.827 31.888 -98.726 1 64.92 ? O2 GOL 603 D 1 
HETATM 5 C C3 GOL . . . N 5 -71.306 33.526 -99.619 1 66.44 ? C3 GOL 603 D 1 
HETATM 6 O O3 GOL . . . N 5 -71.734 34.46 -100.619 1 64.37 ? O3 GOL 603 D 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#