data_6DFO
#
_model_server_result.job_id            5_M9xLeINsqAklz4jK7nyQ 
_model_server_result.datetime_utc      '2025-07-03 23:28:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dfo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    6DFO 
#
_exptl.entry_id    6DFO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              346.137 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            8-bromoadenosine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.78 
_cell.angle_gamma         90 
_cell.entry_id            6DFO 
_cell.length_a            55.556 
_cell.length_b            74.734 
_cell.length_c            89.67 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DFO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H12 Br N5 O4' 
_chem_comp.formula_weight    346.137 
_chem_comp.id                GBA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              8-bromoadenosine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N6 C6 GBA sing 83 n n 
N1 C6 GBA doub 84 n y 
N1 C2 GBA sing 85 n y 
C6 C5 GBA sing 86 n y 
C2 N3 GBA doub 87 n y 
C5 N7 GBA sing 88 n y 
C5 C4 GBA doub 89 n y 
N7 C8 GBA doub 90 n y 
N3 C4 GBA sing 91 n y 
C4 N9 GBA sing 92 n y 
C8 N9 GBA sing 93 n y 
C8 BR8 GBA sing 94 n n 
N9 C1' GBA sing 95 n n 
O5' C5' GBA sing 96 n n 
O4' C1' GBA sing 97 n n 
O4' C4' GBA sing 98 n n 
C1' C2' GBA sing 99 n n 
C5' C4' GBA sing 100 n n 
C4' C3' GBA sing 101 n n 
C2' C3' GBA sing 102 n n 
C2' O2' GBA sing 103 n n 
C3' O3' GBA sing 104 n n 
O2' H1 GBA sing 105 n n 
C2' H2 GBA sing 106 n n 
C3' H3 GBA sing 107 n n 
O3' H4 GBA sing 108 n n 
C4' H5 GBA sing 109 n n 
C5' H6 GBA sing 110 n n 
C5' H7 GBA sing 111 n n 
O5' H8 GBA sing 112 n n 
C1' H9 GBA sing 113 n n 
C2 H10 GBA sing 114 n n 
N6 H11 GBA sing 115 n n 
N6 H12 GBA sing 116 n n 
#
_atom_sites.entry_id                     6DFO 
_atom_sites.fract_transf_matrix[1][1]    0.018 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00278 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013381 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011284 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GBA A 1 501 2 GBA DRG . 
D 2 GBA B 1 501 1 GBA DRG . 
E 3 HOH A 1 601 362 HOH HOH . 
E 3 HOH A 2 602 95 HOH HOH . 
E 3 HOH A 3 603 93 HOH HOH . 
E 3 HOH A 4 604 262 HOH HOH . 
E 3 HOH A 5 605 340 HOH HOH . 
E 3 HOH A 6 606 25 HOH HOH . 
E 3 HOH A 7 607 65 HOH HOH . 
E 3 HOH A 8 608 63 HOH HOH . 
E 3 HOH A 9 609 351 HOH HOH . 
E 3 HOH A 10 610 327 HOH HOH . 
E 3 HOH A 11 611 87 HOH HOH . 
E 3 HOH A 12 612 300 HOH HOH . 
E 3 HOH A 13 613 9 HOH HOH . 
E 3 HOH A 14 614 253 HOH HOH . 
E 3 HOH A 15 615 33 HOH HOH . 
E 3 HOH A 16 616 366 HOH HOH . 
E 3 HOH A 17 617 67 HOH HOH . 
E 3 HOH A 18 618 199 HOH HOH . 
E 3 HOH A 19 619 47 HOH HOH . 
E 3 HOH A 20 620 235 HOH HOH . 
E 3 HOH A 21 621 1 HOH HOH . 
E 3 HOH A 22 622 350 HOH HOH . 
E 3 HOH A 23 623 333 HOH HOH . 
E 3 HOH A 24 624 209 HOH HOH . 
E 3 HOH A 25 625 50 HOH HOH . 
E 3 HOH A 26 626 23 HOH HOH . 
E 3 HOH A 27 627 100 HOH HOH . 
E 3 HOH A 28 628 56 HOH HOH . 
E 3 HOH A 29 629 89 HOH HOH . 
E 3 HOH A 30 630 357 HOH HOH . 
E 3 HOH A 31 631 346 HOH HOH . 
E 3 HOH A 32 632 258 HOH HOH . 
E 3 HOH A 33 633 386 HOH HOH . 
E 3 HOH A 34 634 343 HOH HOH . 
E 3 HOH A 35 635 393 HOH HOH . 
E 3 HOH A 36 636 10 HOH HOH . 
E 3 HOH A 37 637 370 HOH HOH . 
E 3 HOH A 38 638 45 HOH HOH . 
E 3 HOH A 39 639 250 HOH HOH . 
E 3 HOH A 40 640 278 HOH HOH . 
E 3 HOH A 41 641 121 HOH HOH . 
E 3 HOH A 42 642 328 HOH HOH . 
E 3 HOH A 43 643 135 HOH HOH . 
E 3 HOH A 44 644 360 HOH HOH . 
E 3 HOH A 45 645 167 HOH HOH . 
E 3 HOH A 46 646 287 HOH HOH . 
E 3 HOH A 47 647 337 HOH HOH . 
E 3 HOH A 48 648 205 HOH HOH . 
E 3 HOH A 49 649 365 HOH HOH . 
E 3 HOH A 50 650 211 HOH HOH . 
E 3 HOH A 51 651 71 HOH HOH . 
E 3 HOH A 52 652 229 HOH HOH . 
E 3 HOH A 53 653 68 HOH HOH . 
E 3 HOH A 54 654 147 HOH HOH . 
E 3 HOH A 55 655 90 HOH HOH . 
E 3 HOH A 56 656 133 HOH HOH . 
E 3 HOH A 57 657 210 HOH HOH . 
E 3 HOH A 58 658 38 HOH HOH . 
E 3 HOH A 59 659 395 HOH HOH . 
E 3 HOH A 60 660 12 HOH HOH . 
E 3 HOH A 61 661 376 HOH HOH . 
E 3 HOH A 62 662 228 HOH HOH . 
E 3 HOH A 63 663 156 HOH HOH . 
E 3 HOH A 64 664 55 HOH HOH . 
E 3 HOH A 65 665 4 HOH HOH . 
E 3 HOH A 66 666 251 HOH HOH . 
E 3 HOH A 67 667 313 HOH HOH . 
E 3 HOH A 68 668 194 HOH HOH . 
E 3 HOH A 69 669 361 HOH HOH . 
E 3 HOH A 70 670 202 HOH HOH . 
E 3 HOH A 71 671 117 HOH HOH . 
E 3 HOH A 72 672 378 HOH HOH . 
E 3 HOH A 73 673 112 HOH HOH . 
E 3 HOH A 74 674 391 HOH HOH . 
E 3 HOH A 75 675 208 HOH HOH . 
E 3 HOH A 76 676 200 HOH HOH . 
E 3 HOH A 77 677 123 HOH HOH . 
E 3 HOH A 78 678 206 HOH HOH . 
E 3 HOH A 79 679 128 HOH HOH . 
E 3 HOH A 80 680 48 HOH HOH . 
E 3 HOH A 81 681 367 HOH HOH . 
E 3 HOH A 82 682 232 HOH HOH . 
E 3 HOH A 83 683 160 HOH HOH . 
E 3 HOH A 84 684 212 HOH HOH . 
E 3 HOH A 85 685 309 HOH HOH . 
E 3 HOH A 86 686 109 HOH HOH . 
E 3 HOH A 87 687 270 HOH HOH . 
E 3 HOH A 88 688 377 HOH HOH . 
E 3 HOH A 89 689 122 HOH HOH . 
E 3 HOH A 90 690 382 HOH HOH . 
E 3 HOH A 91 691 256 HOH HOH . 
E 3 HOH A 92 692 201 HOH HOH . 
E 3 HOH A 93 693 329 HOH HOH . 
E 3 HOH A 94 694 5 HOH HOH . 
E 3 HOH A 95 695 103 HOH HOH . 
E 3 HOH A 96 696 83 HOH HOH . 
E 3 HOH A 97 697 207 HOH HOH . 
E 3 HOH A 98 698 330 HOH HOH . 
E 3 HOH A 99 699 8 HOH HOH . 
E 3 HOH A 100 700 233 HOH HOH . 
E 3 HOH A 101 701 396 HOH HOH . 
E 3 HOH A 102 702 383 HOH HOH . 
E 3 HOH A 103 703 17 HOH HOH . 
E 3 HOH A 104 704 296 HOH HOH . 
E 3 HOH A 105 705 242 HOH HOH . 
E 3 HOH A 106 706 3 HOH HOH . 
E 3 HOH A 107 707 310 HOH HOH . 
E 3 HOH A 108 708 19 HOH HOH . 
E 3 HOH A 109 709 240 HOH HOH . 
E 3 HOH A 110 710 307 HOH HOH . 
E 3 HOH A 111 711 304 HOH HOH . 
F 3 HOH B 1 601 347 HOH HOH . 
F 3 HOH B 2 602 354 HOH HOH . 
F 3 HOH B 3 603 331 HOH HOH . 
F 3 HOH B 4 604 88 HOH HOH . 
F 3 HOH B 5 605 139 HOH HOH . 
F 3 HOH B 6 606 203 HOH HOH . 
F 3 HOH B 7 607 345 HOH HOH . 
F 3 HOH B 8 608 349 HOH HOH . 
F 3 HOH B 9 609 336 HOH HOH . 
F 3 HOH B 10 610 187 HOH HOH . 
F 3 HOH B 11 611 52 HOH HOH . 
F 3 HOH B 12 612 388 HOH HOH . 
F 3 HOH B 13 613 326 HOH HOH . 
F 3 HOH B 14 614 77 HOH HOH . 
F 3 HOH B 15 615 348 HOH HOH . 
F 3 HOH B 16 616 146 HOH HOH . 
F 3 HOH B 17 617 31 HOH HOH . 
F 3 HOH B 18 618 166 HOH HOH . 
F 3 HOH B 19 619 381 HOH HOH . 
F 3 HOH B 20 620 359 HOH HOH . 
F 3 HOH B 21 621 338 HOH HOH . 
F 3 HOH B 22 622 24 HOH HOH . 
F 3 HOH B 23 623 150 HOH HOH . 
F 3 HOH B 24 624 72 HOH HOH . 
F 3 HOH B 25 625 273 HOH HOH . 
F 3 HOH B 26 626 271 HOH HOH . 
F 3 HOH B 27 627 44 HOH HOH . 
F 3 HOH B 28 628 335 HOH HOH . 
F 3 HOH B 29 629 120 HOH HOH . 
F 3 HOH B 30 630 385 HOH HOH . 
F 3 HOH B 31 631 113 HOH HOH . 
F 3 HOH B 32 632 355 HOH HOH . 
F 3 HOH B 33 633 42 HOH HOH . 
F 3 HOH B 34 634 2 HOH HOH . 
F 3 HOH B 35 635 21 HOH HOH . 
F 3 HOH B 36 636 43 HOH HOH . 
F 3 HOH B 37 637 332 HOH HOH . 
F 3 HOH B 38 638 352 HOH HOH . 
F 3 HOH B 39 639 371 HOH HOH . 
F 3 HOH B 40 640 339 HOH HOH . 
F 3 HOH B 41 641 334 HOH HOH . 
F 3 HOH B 42 642 127 HOH HOH . 
F 3 HOH B 43 643 306 HOH HOH . 
F 3 HOH B 44 644 30 HOH HOH . 
F 3 HOH B 45 645 368 HOH HOH . 
F 3 HOH B 46 646 91 HOH HOH . 
F 3 HOH B 47 647 341 HOH HOH . 
F 3 HOH B 48 648 151 HOH HOH . 
F 3 HOH B 49 649 40 HOH HOH . 
F 3 HOH B 50 650 353 HOH HOH . 
F 3 HOH B 51 651 130 HOH HOH . 
F 3 HOH B 52 652 73 HOH HOH . 
F 3 HOH B 53 653 266 HOH HOH . 
F 3 HOH B 54 654 92 HOH HOH . 
F 3 HOH B 55 655 384 HOH HOH . 
F 3 HOH B 56 656 394 HOH HOH . 
F 3 HOH B 57 657 176 HOH HOH . 
F 3 HOH B 58 658 243 HOH HOH . 
F 3 HOH B 59 659 204 HOH HOH . 
F 3 HOH B 60 660 321 HOH HOH . 
F 3 HOH B 61 661 344 HOH HOH . 
F 3 HOH B 62 662 53 HOH HOH . 
F 3 HOH B 63 663 285 HOH HOH . 
F 3 HOH B 64 664 379 HOH HOH . 
F 3 HOH B 65 665 380 HOH HOH . 
F 3 HOH B 66 666 64 HOH HOH . 
F 3 HOH B 67 667 161 HOH HOH . 
F 3 HOH B 68 668 358 HOH HOH . 
F 3 HOH B 69 669 375 HOH HOH . 
F 3 HOH B 70 670 81 HOH HOH . 
F 3 HOH B 71 671 18 HOH HOH . 
F 3 HOH B 72 672 374 HOH HOH . 
F 3 HOH B 73 673 342 HOH HOH . 
F 3 HOH B 74 674 153 HOH HOH . 
F 3 HOH B 75 675 137 HOH HOH . 
F 3 HOH B 76 676 389 HOH HOH . 
F 3 HOH B 77 677 281 HOH HOH . 
F 3 HOH B 78 678 172 HOH HOH . 
F 3 HOH B 79 679 79 HOH HOH . 
F 3 HOH B 80 680 318 HOH HOH . 
F 3 HOH B 81 681 7 HOH HOH . 
F 3 HOH B 82 682 276 HOH HOH . 
F 3 HOH B 83 683 372 HOH HOH . 
F 3 HOH B 84 684 14 HOH HOH . 
F 3 HOH B 85 685 274 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 GBA . . . D 2 4.504 35.873 37.732 1 49.13 ? C4 GBA 501 B 1 
HETATM 2 C C5 GBA . . . D 2 3.905 36.936 37.158 1 46.38 ? C5 GBA 501 B 1 
HETATM 3 C C6 GBA . . . D 2 4.627 37.782 36.403 1 40.42 ? C6 GBA 501 B 1 
HETATM 4 C C8 GBA . . . D 2 2.425 35.838 38.232 1 64.98 ? C8 GBA 501 B 1 
HETATM 5 N N1 GBA . . . D 2 5.946 37.612 36.218 1 39.51 ? N1 GBA 501 B 1 
HETATM 6 N N3 GBA . . . D 2 5.839 35.656 37.586 1 46.53 ? N3 GBA 501 B 1 
HETATM 7 O O2' GBA . . . D 2 4.464 34.775 41.488 1 45.7 ? O2' GBA 501 B 1 
HETATM 8 C C2' GBA . . . D 2 3.461 34.091 40.712 1 47 ? C2' GBA 501 B 1 
HETATM 9 C C3' GBA . . . D 2 3.334 32.644 41.127 1 42.51 ? C3' GBA 501 B 1 
HETATM 10 O O3' GBA . . . D 2 4.63 32.185 41.557 1 35.84 ? O3' GBA 501 B 1 
HETATM 11 C C4' GBA . . . D 2 2.947 31.911 39.826 1 46.66 ? C4' GBA 501 B 1 
HETATM 12 C C5' GBA . . . D 2 1.474 31.469 39.801 1 47.85 ? C5' GBA 501 B 1 
HETATM 13 O O5' GBA . . . D 2 1.128 30.986 38.482 1 47.03 ? O5' GBA 501 B 1 
HETATM 14 O O4' GBA . . . D 2 3.15 32.824 38.724 1 49.76 ? O4' GBA 501 B 1 
HETATM 15 C C1' GBA . . . D 2 3.876 33.969 39.223 1 50.4 ? C1' GBA 501 B 1 
HETATM 16 N N9 GBA . . . D 2 3.583 35.203 38.418 1 53.44 ? N9 GBA 501 B 1 
HETATM 17 BR BR8 GBA . . . D 2 0.704 35.278 38.927 1 90.35 ? BR8 GBA 501 B 1 
HETATM 18 N N7 GBA . . . D 2 2.614 36.905 37.474 1 52.24 ? N7 GBA 501 B 1 
HETATM 19 C C2 GBA . . . D 2 6.62 36.549 36.837 1 41.34 ? C2 GBA 501 B 1 
HETATM 20 N N6 GBA . . . D 2 4.005 38.851 35.904 1 38.4 ? N6 GBA 501 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#