data_6DFQ # _model_server_result.job_id zY5xytGh3ztnLG2VhtoAig _model_server_result.datetime_utc '2024-11-17 07:37:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 6DFQ # _exptl.entry_id 6DFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DFQ _cell.length_a 95.107 _cell.length_b 117.629 _cell.length_c 234.774 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,L,M 1 1 C,D,N,O 2 1 E,F,I,P,Q 3 1 G,H,J,K,R,S 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 E CYS 23 1_555 A SG CYS 90 E CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf2 A SG CYS 139 E CYS 139 1_555 A SG CYS 189 E CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf3 A SG CYS 164 E CYS 164 1_555 B SG CYS 169 F CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? disulf ? disulf4 B SG CYS 23 F CYS 23 1_555 B SG CYS 91 F CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 B SG CYS 143 F CYS 143 1_555 B SG CYS 208 F CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 C SG CYS 23 A CYS 23 1_555 C SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf7 C SG CYS 139 A CYS 139 1_555 C SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf8 C SG CYS 164 A CYS 164 1_555 D SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf9 D SG CYS 23 B CYS 23 1_555 D SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 D SG CYS 143 B CYS 143 1_555 D SG CYS 208 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf11 E SG CYS 23 C CYS 23 1_555 E SG CYS 90 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf12 E SG CYS 139 C CYS 139 1_555 E SG CYS 189 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf13 E SG CYS 164 C CYS 164 1_555 F SG CYS 169 D CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf14 F SG CYS 23 D CYS 23 1_555 F SG CYS 91 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf15 F SG CYS 143 D CYS 143 1_555 F SG CYS 208 D CYS 208 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.04 ? disulf ? disulf16 F SG CYS 143 D CYS 143 1_555 F SG CYS 208 D CYS 208 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.071 ? disulf ? disulf17 G SG CYS 23 G CYS 23 1_555 G SG CYS 90 G CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf18 G SG CYS 164 G CYS 164 1_555 H SG CYS 169 H CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf19 H SG CYS 23 H CYS 23 1_555 H SG CYS 91 H CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf20 H SG CYS 143 H CYS 143 1_555 H SG CYS 208 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 E OD1 ASN 120 C ASN 120 1_555 I CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc2 E O PRO 121 C PRO 121 1_555 I CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc3 I CA CA . C CA 301 1_555 P O HOH . C HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DFQ _atom_sites.fract_transf_matrix[1][1] 0.010514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 CA C 1 301 1 CA CA . J 4 EDO G 1 301 1 EDO EDO . K 4 EDO G 1 302 2 EDO EDO . L 5 HOH E 1 301 67 HOH HOH . L 5 HOH E 2 302 18 HOH HOH . L 5 HOH E 3 303 33 HOH HOH . L 5 HOH E 4 304 261 HOH HOH . L 5 HOH E 5 305 232 HOH HOH . L 5 HOH E 6 306 41 HOH HOH . L 5 HOH E 7 307 29 HOH HOH . L 5 HOH E 8 308 202 HOH HOH . L 5 HOH E 9 309 30 HOH HOH . L 5 HOH E 10 310 137 HOH HOH . L 5 HOH E 11 311 182 HOH HOH . L 5 HOH E 12 312 72 HOH HOH . L 5 HOH E 13 313 251 HOH HOH . L 5 HOH E 14 314 194 HOH HOH . L 5 HOH E 15 315 19 HOH HOH . L 5 HOH E 16 316 76 HOH HOH . L 5 HOH E 17 317 252 HOH HOH . L 5 HOH E 18 318 237 HOH HOH . L 5 HOH E 19 319 169 HOH HOH . L 5 HOH E 20 320 159 HOH HOH . L 5 HOH E 21 321 55 HOH HOH . L 5 HOH E 22 322 74 HOH HOH . L 5 HOH E 23 323 263 HOH HOH . L 5 HOH E 24 324 80 HOH HOH . L 5 HOH E 25 325 104 HOH HOH . L 5 HOH E 26 326 260 HOH HOH . L 5 HOH E 27 327 259 HOH HOH . M 5 HOH F 1 301 47 HOH HOH . M 5 HOH F 2 302 48 HOH HOH . M 5 HOH F 3 303 87 HOH HOH . M 5 HOH F 4 304 86 HOH HOH . M 5 HOH F 5 305 198 HOH HOH . M 5 HOH F 6 306 188 HOH HOH . M 5 HOH F 7 307 15 HOH HOH . M 5 HOH F 8 308 3 HOH HOH . M 5 HOH F 9 309 110 HOH HOH . M 5 HOH F 10 310 52 HOH HOH . M 5 HOH F 11 311 4 HOH HOH . M 5 HOH F 12 312 229 HOH HOH . M 5 HOH F 13 313 24 HOH HOH . M 5 HOH F 14 314 31 HOH HOH . M 5 HOH F 15 315 6 HOH HOH . M 5 HOH F 16 316 9 HOH HOH . M 5 HOH F 17 317 132 HOH HOH . M 5 HOH F 18 318 88 HOH HOH . M 5 HOH F 19 319 53 HOH HOH . M 5 HOH F 20 320 13 HOH HOH . M 5 HOH F 21 321 185 HOH HOH . M 5 HOH F 22 322 102 HOH HOH . M 5 HOH F 23 323 14 HOH HOH . M 5 HOH F 24 324 262 HOH HOH . M 5 HOH F 25 325 160 HOH HOH . M 5 HOH F 26 326 60 HOH HOH . M 5 HOH F 27 327 75 HOH HOH . M 5 HOH F 28 328 20 HOH HOH . M 5 HOH F 29 329 171 HOH HOH . M 5 HOH F 30 330 44 HOH HOH . M 5 HOH F 31 331 214 HOH HOH . M 5 HOH F 32 332 7 HOH HOH . M 5 HOH F 33 333 228 HOH HOH . M 5 HOH F 34 334 226 HOH HOH . M 5 HOH F 35 335 153 HOH HOH . M 5 HOH F 36 336 213 HOH HOH . M 5 HOH F 37 337 218 HOH HOH . M 5 HOH F 38 338 65 HOH HOH . M 5 HOH F 39 339 239 HOH HOH . M 5 HOH F 40 340 236 HOH HOH . M 5 HOH F 41 341 266 HOH HOH . N 5 HOH A 1 301 121 HOH HOH . N 5 HOH A 2 302 118 HOH HOH . N 5 HOH A 3 303 146 HOH HOH . N 5 HOH A 4 304 56 HOH HOH . N 5 HOH A 5 305 35 HOH HOH . N 5 HOH A 6 306 257 HOH HOH . N 5 HOH A 7 307 8 HOH HOH . N 5 HOH A 8 308 256 HOH HOH . N 5 HOH A 9 309 167 HOH HOH . N 5 HOH A 10 310 81 HOH HOH . N 5 HOH A 11 311 149 HOH HOH . N 5 HOH A 12 312 107 HOH HOH . N 5 HOH A 13 313 138 HOH HOH . N 5 HOH A 14 314 240 HOH HOH . N 5 HOH A 15 315 212 HOH HOH . N 5 HOH A 16 316 51 HOH HOH . N 5 HOH A 17 317 125 HOH HOH . N 5 HOH A 18 318 265 HOH HOH . N 5 HOH A 19 319 38 HOH HOH . N 5 HOH A 20 320 139 HOH HOH . N 5 HOH A 21 321 151 HOH HOH . N 5 HOH A 22 322 201 HOH HOH . O 5 HOH B 1 301 27 HOH HOH . O 5 HOH B 2 302 189 HOH HOH . O 5 HOH B 3 303 23 HOH HOH . O 5 HOH B 4 304 91 HOH HOH . O 5 HOH B 5 305 101 HOH HOH . O 5 HOH B 6 306 58 HOH HOH . O 5 HOH B 7 307 187 HOH HOH . O 5 HOH B 8 308 216 HOH HOH . O 5 HOH B 9 309 46 HOH HOH . O 5 HOH B 10 310 119 HOH HOH . O 5 HOH B 11 311 134 HOH HOH . O 5 HOH B 12 312 112 HOH HOH . O 5 HOH B 13 313 71 HOH HOH . O 5 HOH B 14 314 234 HOH HOH . P 5 HOH C 1 401 92 HOH HOH . P 5 HOH C 2 402 154 HOH HOH . P 5 HOH C 3 403 211 HOH HOH . P 5 HOH C 4 404 62 HOH HOH . P 5 HOH C 5 405 136 HOH HOH . P 5 HOH C 6 406 50 HOH HOH . P 5 HOH C 7 407 227 HOH HOH . P 5 HOH C 8 408 17 HOH HOH . P 5 HOH C 9 409 223 HOH HOH . P 5 HOH C 10 410 2 HOH HOH . P 5 HOH C 11 411 253 HOH HOH . P 5 HOH C 12 412 10 HOH HOH . P 5 HOH C 13 413 25 HOH HOH . P 5 HOH C 14 414 264 HOH HOH . P 5 HOH C 15 415 116 HOH HOH . P 5 HOH C 16 416 254 HOH HOH . P 5 HOH C 17 417 69 HOH HOH . P 5 HOH C 18 418 140 HOH HOH . P 5 HOH C 19 419 267 HOH HOH . P 5 HOH C 20 420 163 HOH HOH . P 5 HOH C 21 421 177 HOH HOH . Q 5 HOH D 1 301 85 HOH HOH . Q 5 HOH D 2 302 128 HOH HOH . Q 5 HOH D 3 303 106 HOH HOH . Q 5 HOH D 4 304 109 HOH HOH . Q 5 HOH D 5 305 11 HOH HOH . Q 5 HOH D 6 306 225 HOH HOH . Q 5 HOH D 7 307 54 HOH HOH . Q 5 HOH D 8 308 103 HOH HOH . Q 5 HOH D 9 309 231 HOH HOH . Q 5 HOH D 10 310 141 HOH HOH . Q 5 HOH D 11 311 59 HOH HOH . R 5 HOH G 1 401 165 HOH HOH . R 5 HOH G 2 402 113 HOH HOH . R 5 HOH G 3 403 181 HOH HOH . R 5 HOH G 4 404 83 HOH HOH . R 5 HOH G 5 405 43 HOH HOH . R 5 HOH G 6 406 247 HOH HOH . R 5 HOH G 7 407 84 HOH HOH . R 5 HOH G 8 408 162 HOH HOH . R 5 HOH G 9 409 133 HOH HOH . R 5 HOH G 10 410 108 HOH HOH . R 5 HOH G 11 411 255 HOH HOH . R 5 HOH G 12 412 203 HOH HOH . R 5 HOH G 13 413 37 HOH HOH . R 5 HOH G 14 414 63 HOH HOH . R 5 HOH G 15 415 215 HOH HOH . R 5 HOH G 16 416 224 HOH HOH . R 5 HOH G 17 417 221 HOH HOH . R 5 HOH G 18 418 155 HOH HOH . R 5 HOH G 19 419 258 HOH HOH . R 5 HOH G 20 420 79 HOH HOH . R 5 HOH G 21 421 99 HOH HOH . R 5 HOH G 22 422 89 HOH HOH . R 5 HOH G 23 423 124 HOH HOH . S 5 HOH H 1 301 144 HOH HOH . S 5 HOH H 2 302 207 HOH HOH . S 5 HOH H 3 303 192 HOH HOH . S 5 HOH H 4 304 115 HOH HOH . S 5 HOH H 5 305 184 HOH HOH . S 5 HOH H 6 306 230 HOH HOH . S 5 HOH H 7 307 142 HOH HOH . S 5 HOH H 8 308 82 HOH HOH . S 5 HOH H 9 309 98 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x 56.806 _atom_site.Cartn_y -11.718 _atom_site.Cartn_z -10.747 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #