data_6DFR # _model_server_result.job_id jIPg355n0o-fDLesJLIn-g _model_server_result.datetime_utc '2024-11-24 00:42:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":164}' # _entry.id 6DFR # _exptl.entry_id 6DFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DFR _cell.length_a 34.853 _cell.length_b 59 _cell.length_c 81.282 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 6DFR _atom_sites.fract_transf_matrix[1][1] 0.028692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 350 350 CA CA . C 3 NAP A 1 164 164 NAP NAP . D 4 HOH A 1 201 201 HOH HOH . D 4 HOH A 2 203 203 HOH HOH . D 4 HOH A 3 204 204 HOH HOH . D 4 HOH A 4 205 205 HOH HOH . D 4 HOH A 5 208 208 HOH HOH . D 4 HOH A 6 210 210 HOH HOH . D 4 HOH A 7 211 211 HOH HOH . D 4 HOH A 8 212 212 HOH HOH . D 4 HOH A 9 214 214 HOH HOH . D 4 HOH A 10 215 215 HOH HOH . D 4 HOH A 11 216 216 HOH HOH . D 4 HOH A 12 217 217 HOH HOH . D 4 HOH A 13 218 218 HOH HOH . D 4 HOH A 14 219 219 HOH HOH . D 4 HOH A 15 220 220 HOH HOH . D 4 HOH A 16 221 221 HOH HOH . D 4 HOH A 17 222 222 HOH HOH . D 4 HOH A 18 223 223 HOH HOH . D 4 HOH A 19 224 224 HOH HOH . D 4 HOH A 20 225 225 HOH HOH . D 4 HOH A 21 226 226 HOH HOH . D 4 HOH A 22 229 229 HOH HOH . D 4 HOH A 23 230 230 HOH HOH . D 4 HOH A 24 231 231 HOH HOH . D 4 HOH A 25 232 232 HOH HOH . D 4 HOH A 26 233 233 HOH HOH . D 4 HOH A 27 235 235 HOH HOH . D 4 HOH A 28 240 240 HOH HOH . D 4 HOH A 29 241 241 HOH HOH . D 4 HOH A 30 244 244 HOH HOH . D 4 HOH A 31 246 246 HOH HOH . D 4 HOH A 32 247 247 HOH HOH . D 4 HOH A 33 248 248 HOH HOH . D 4 HOH A 34 253 253 HOH HOH . D 4 HOH A 35 255 255 HOH HOH . D 4 HOH A 36 256 256 HOH HOH . D 4 HOH A 37 257 257 HOH HOH . D 4 HOH A 38 258 258 HOH HOH . D 4 HOH A 39 264 264 HOH HOH . D 4 HOH A 40 265 265 HOH HOH . D 4 HOH A 41 266 266 HOH HOH . D 4 HOH A 42 267 267 HOH HOH . D 4 HOH A 43 270 270 HOH HOH . D 4 HOH A 44 279 279 HOH HOH . D 4 HOH A 45 283 283 HOH HOH . D 4 HOH A 46 287 287 HOH HOH . D 4 HOH A 47 294 294 HOH HOH . D 4 HOH A 48 305 305 HOH HOH . D 4 HOH A 49 307 307 HOH HOH . D 4 HOH A 50 330 330 HOH HOH . D 4 HOH A 51 338 338 HOH HOH . D 4 HOH A 52 340 340 HOH HOH . D 4 HOH A 53 343 343 HOH HOH . D 4 HOH A 54 349 349 HOH HOH . D 4 HOH A 55 371 371 HOH HOH . D 4 HOH A 56 372 372 HOH HOH . D 4 HOH A 57 373 373 HOH HOH . D 4 HOH A 58 374 374 HOH HOH . D 4 HOH A 59 375 375 HOH HOH . D 4 HOH A 60 376 376 HOH HOH . D 4 HOH A 61 377 377 HOH HOH . D 4 HOH A 62 378 378 HOH HOH . D 4 HOH A 63 379 379 HOH HOH . D 4 HOH A 64 381 381 HOH HOH . D 4 HOH A 65 383 383 HOH HOH . D 4 HOH A 66 385 385 HOH HOH . D 4 HOH A 67 386 386 HOH HOH . D 4 HOH A 68 387 387 HOH HOH . D 4 HOH A 69 388 388 HOH HOH . D 4 HOH A 70 389 389 HOH HOH . D 4 HOH A 71 390 390 HOH HOH . D 4 HOH A 72 405 405 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 18.982 17.705 25.98 1 14.76 ? PA NAP 164 A 1 HETATM 2 O O1A NAP . . . C 3 17.74 18.252 25.321 1 11.74 ? O1A NAP 164 A 1 HETATM 3 O O2A NAP . . . C 3 19.486 18.589 27.057 1 19.25 ? O2A NAP 164 A 1 HETATM 4 O O5B NAP . . . C 3 18.795 16.131 26.434 1 15.23 ? O5B NAP 164 A 1 HETATM 5 C C5B NAP . . . C 3 17.891 15.28 25.765 1 11.31 ? C5B NAP 164 A 1 HETATM 6 C C4B NAP . . . C 3 17.599 14.032 26.593 1 19.9 ? C4B NAP 164 A 1 HETATM 7 O O4B NAP . . . C 3 16.578 14.22 27.132 1 21.16 ? O4B NAP 164 A 1 HETATM 8 C C3B NAP . . . C 3 17.424 12.765 25.657 1 16.86 ? C3B NAP 164 A 1 HETATM 9 O O3B NAP . . . C 3 18.737 12.061 25.65 1 12.97 ? O3B NAP 164 A 1 HETATM 10 C C2B NAP . . . C 3 16.466 11.977 26.591 1 18.47 ? C2B NAP 164 A 1 HETATM 11 O O2B NAP . . . C 3 17.211 11.437 27.644 1 14.51 ? O2B NAP 164 A 1 HETATM 12 C C1B NAP . . . C 3 15.656 13.109 27.173 1 14.98 ? C1B NAP 164 A 1 HETATM 13 N N9A NAP . . . C 3 14.555 13.474 26.259 1 13.33 ? N9A NAP 164 A 1 HETATM 14 C C8A NAP . . . C 3 14.605 14.538 25.434 1 8.73 ? C8A NAP 164 A 1 HETATM 15 N N7A NAP . . . C 3 13.396 14.623 24.832 1 6.54 ? N7A NAP 164 A 1 HETATM 16 C C5A NAP . . . C 3 12.68 13.519 25.389 1 4.4 ? C5A NAP 164 A 1 HETATM 17 C C6A NAP . . . C 3 11.238 12.919 25.216 1 10.67 ? C6A NAP 164 A 1 HETATM 18 N N6A NAP . . . C 3 10.308 13.452 24.354 1 9.86 ? N6A NAP 164 A 1 HETATM 19 N N1A NAP . . . C 3 10.928 11.836 25.918 1 12.53 ? N1A NAP 164 A 1 HETATM 20 C C2A NAP . . . C 3 11.881 11.368 26.755 1 11.68 ? C2A NAP 164 A 1 HETATM 21 N N3A NAP . . . C 3 13.145 11.743 26.948 1 8.93 ? N3A NAP 164 A 1 HETATM 22 C C4A NAP . . . C 3 13.457 12.833 26.212 1 9.28 ? C4A NAP 164 A 1 HETATM 23 O O3 NAP . . . C 3 20.195 17.581 25.045 1 18.74 ? O3 NAP 164 A 1 HETATM 24 P PN NAP . . . C 3 20.805 18.11 23.727 1 21.24 ? PN NAP 164 A 1 HETATM 25 O O1N NAP . . . C 3 19.964 18.012 22.571 1 17.66 ? O1N NAP 164 A 1 HETATM 26 O O2N NAP . . . C 3 22.167 17.565 23.482 1 29.38 ? O2N NAP 164 A 1 HETATM 27 O O5D NAP . . . C 3 21.048 19.718 24.125 1 25.85 ? O5D NAP 164 A 1 HETATM 28 C C5D NAP . . . C 3 22.1 20.122 25.076 1 34.4 ? C5D NAP 164 A 1 HETATM 29 C C4D NAP . . . C 3 23.166 21.003 24.422 1 44.11 ? C4D NAP 164 A 1 HETATM 30 O O4D NAP . . . C 3 22.734 22.393 24.418 1 47.78 ? O4D NAP 164 A 1 HETATM 31 C C3D NAP . . . C 3 24.595 21.099 25.146 1 49.38 ? C3D NAP 164 A 1 HETATM 32 O O3D NAP . . . C 3 25.348 22.316 24.737 1 56.86 ? O3D NAP 164 A 1 HETATM 33 P P2B NAP . . . C 3 17.604 9.936 27.628 1 12.91 ? P2B NAP 164 A 1 HETATM 34 O O1X NAP . . . C 3 17.979 9.591 29.055 1 17.44 ? O1X NAP 164 A 1 HETATM 35 O O2X NAP . . . C 3 16.339 9.283 27.155 1 16.77 ? O2X NAP 164 A 1 HETATM 36 O O3X NAP . . . C 3 18.746 9.789 26.639 1 14.13 ? O3X NAP 164 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #