data_6DGJ # _model_server_result.job_id xuqL2aq7BBCYvk038o8tAg _model_server_result.datetime_utc '2024-11-16 16:06:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6DGJ # _exptl.entry_id 6DGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 198.302 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z)-dodec-2-enoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.49 _cell.angle_gamma 90 _cell.entry_id 6DGJ _cell.length_a 39.932 _cell.length_b 29.15 _cell.length_c 41.554 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H22 O2' _chem_comp.formula_weight 198.302 _chem_comp.id GEY _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z)-dodec-2-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 GEY doub 83 n n C1 C2 GEY sing 84 n n C1 O1 GEY sing 85 n n C2 C3 GEY doub 86 z n C3 C4 GEY sing 87 n n C4 C5 GEY sing 88 n n C6 C5 GEY sing 89 n n C6 C7 GEY sing 90 n n C8 C7 GEY sing 91 n n C8 C9 GEY sing 92 n n C9 C10 GEY sing 93 n n C10 C11 GEY sing 94 n n C11 C12 GEY sing 95 n n C2 H1 GEY sing 96 n n C3 H2 GEY sing 97 n n C4 H4 GEY sing 98 n n C4 H3 GEY sing 99 n n C5 H5 GEY sing 100 n n C5 H6 GEY sing 101 n n C6 H7 GEY sing 102 n n C6 H8 GEY sing 103 n n C8 H9 GEY sing 104 n n C8 H10 GEY sing 105 n n O1 H11 GEY sing 106 n n C7 H12 GEY sing 107 n n C7 H13 GEY sing 108 n n C9 H14 GEY sing 109 n n C9 H15 GEY sing 110 n n C10 H16 GEY sing 111 n n C10 H17 GEY sing 112 n n C11 H19 GEY sing 113 n n C11 H18 GEY sing 114 n n C12 H20 GEY sing 115 n n C12 H21 GEY sing 116 n n C12 H22 GEY sing 117 n n # _atom_sites.entry_id 6DGJ _atom_sites.fract_transf_matrix[1][1] 0.025043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011939 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GEY A 1 301 1 GEY EJW . C 3 HOH A 1 401 21 HOH HOH . C 3 HOH A 2 402 5 HOH HOH . C 3 HOH A 3 403 7 HOH HOH . C 3 HOH A 4 404 8 HOH HOH . C 3 HOH A 5 405 24 HOH HOH . C 3 HOH A 6 406 1 HOH HOH . C 3 HOH A 7 407 23 HOH HOH . C 3 HOH A 8 408 19 HOH HOH . C 3 HOH A 9 409 33 HOH HOH . C 3 HOH A 10 410 11 HOH HOH . C 3 HOH A 11 411 13 HOH HOH . C 3 HOH A 12 412 2 HOH HOH . C 3 HOH A 13 413 22 HOH HOH . C 3 HOH A 14 414 6 HOH HOH . C 3 HOH A 15 415 4 HOH HOH . C 3 HOH A 16 416 3 HOH HOH . C 3 HOH A 17 417 9 HOH HOH . C 3 HOH A 18 418 29 HOH HOH . C 3 HOH A 19 419 32 HOH HOH . C 3 HOH A 20 420 16 HOH HOH . C 3 HOH A 21 421 17 HOH HOH . C 3 HOH A 22 422 14 HOH HOH . C 3 HOH A 23 423 20 HOH HOH . C 3 HOH A 24 424 10 HOH HOH . C 3 HOH A 25 425 31 HOH HOH . C 3 HOH A 26 426 12 HOH HOH . C 3 HOH A 27 427 34 HOH HOH . C 3 HOH A 28 428 35 HOH HOH . C 3 HOH A 29 429 15 HOH HOH . C 3 HOH A 30 430 38 HOH HOH . C 3 HOH A 31 431 27 HOH HOH . C 3 HOH A 32 432 25 HOH HOH . C 3 HOH A 33 433 26 HOH HOH . C 3 HOH A 34 434 18 HOH HOH . C 3 HOH A 35 435 36 HOH HOH . C 3 HOH A 36 436 28 HOH HOH . C 3 HOH A 37 437 37 HOH HOH . C 3 HOH A 38 438 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GEY . . . B 2 14.269 28.054 6.257 1 20.28 ? C1 GEY 301 A 1 HETATM 2 C C2 GEY . . . B 2 14.258 26.547 6.407 1 19.04 ? C2 GEY 301 A 1 HETATM 3 C C3 GEY . . . B 2 13.404 25.84 7.146 1 17.59 ? C3 GEY 301 A 1 HETATM 4 C C4 GEY . . . B 2 12.301 26.463 7.936 1 17.47 ? C4 GEY 301 A 1 HETATM 5 C C5 GEY . . . B 2 11.315 25.472 8.592 1 17.82 ? C5 GEY 301 A 1 HETATM 6 C C6 GEY . . . B 2 9.823 25.841 8.478 1 18.44 ? C6 GEY 301 A 1 HETATM 7 C C8 GEY . . . B 2 7.321 25.057 8.542 1 22.3 ? C8 GEY 301 A 1 HETATM 8 O O2 GEY . . . B 2 13.216 28.592 5.932 1 20.67 ? O2 GEY 301 A 1 HETATM 9 O O1 GEY . . . B 2 15.365 28.623 6.486 1 20.41 ? O1 GEY 301 A 1 HETATM 10 C C7 GEY . . . B 2 8.816 24.67 8.626 1 20.03 ? C7 GEY 301 A 1 HETATM 11 C C9 GEY . . . B 2 6.359 24.308 9.49 1 26.71 ? C9 GEY 301 A 1 HETATM 12 C C10 GEY . . . B 2 5.047 25.055 9.81 1 31.24 ? C10 GEY 301 A 1 HETATM 13 C C11 GEY . . . B 2 3.866 24.166 10.207 1 35.69 ? C11 GEY 301 A 1 HETATM 14 C C12 GEY . . . B 2 2.552 24.911 10.377 1 38.61 ? C12 GEY 301 A 1 HETATM 15 H H1 GEY . . . B 2 14.936 26.13 5.926 1 22.95 ? H1 GEY 301 A 1 HETATM 16 H H2 GEY . . . B 2 13.486 24.914 7.169 1 21.2 ? H2 GEY 301 A 1 HETATM 17 H H4 GEY . . . B 2 11.829 27.06 7.334 1 21.06 ? H4 GEY 301 A 1 HETATM 18 H H3 GEY . . . B 2 12.702 27.05 8.596 1 21.06 ? H3 GEY 301 A 1 HETATM 19 H H5 GEY . . . B 2 11.552 25.379 9.528 1 21.48 ? H5 GEY 301 A 1 HETATM 20 H H6 GEY . . . B 2 11.465 24.594 8.208 1 21.48 ? H6 GEY 301 A 1 HETATM 21 H H7 GEY . . . B 2 9.676 26.278 7.624 1 22.23 ? H7 GEY 301 A 1 HETATM 22 H H8 GEY . . . B 2 9.622 26.522 9.138 1 22.23 ? H8 GEY 301 A 1 HETATM 23 H H9 GEY . . . B 2 7.012 24.935 7.63 1 26.85 ? H9 GEY 301 A 1 HETATM 24 H H10 GEY . . . B 2 7.234 26.009 8.705 1 26.85 ? H10 GEY 301 A 1 HETATM 25 H H12 GEY . . . B 2 8.977 24.221 9.471 1 24.14 ? H12 GEY 301 A 1 HETATM 26 H H13 GEY . . . B 2 9.008 24.002 7.95 1 24.14 ? H13 GEY 301 A 1 HETATM 27 H H14 GEY . . . B 2 6.811 24.105 10.324 1 32.15 ? H14 GEY 301 A 1 HETATM 28 H H15 GEY . . . B 2 6.136 23.444 9.111 1 32.15 ? H15 GEY 301 A 1 HETATM 29 H H16 GEY . . . B 2 4.774 25.596 9.053 1 37.59 ? H16 GEY 301 A 1 HETATM 30 H H17 GEY . . . B 2 5.195 25.689 10.529 1 37.59 ? H17 GEY 301 A 1 HETATM 31 H H19 GEY . . . B 2 4.045 23.691 11.034 1 42.93 ? H19 GEY 301 A 1 HETATM 32 H H18 GEY . . . B 2 3.725 23.464 9.553 1 42.93 ? H18 GEY 301 A 1 HETATM 33 H H20 GEY . . . B 2 2.549 25.55 11.107 1 46.42 ? H20 GEY 301 A 1 HETATM 34 H H21 GEY . . . B 2 1.812 24.315 10.576 1 46.42 ? H21 GEY 301 A 1 HETATM 35 H H22 GEY . . . B 2 2.263 25.395 9.588 1 46.42 ? H22 GEY 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #