data_6DGO
#
_model_server_result.job_id            xTkdO3jXjIUZDjaD0Mo7lg 
_model_server_result.datetime_utc      '2025-07-01 23:50:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dgo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6DGO 
#
_exptl.entry_id    6DGO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              441.54 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5S)-5-[(4-{[(2R)-6-hydroxy-2,5,7,8-tetramethyl-3,4-dihydro-2H-1-benzopyran-2-yl]methoxy}phenyl)methyl]-1,3-thiazolidine-2,4-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.1 
_cell.angle_gamma         90 
_cell.entry_id            6DGO 
_cell.length_a            92.81 
_cell.length_b            62.07 
_cell.length_c            118.76 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DGO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H27 N O5 S' 
_chem_comp.formula_weight    441.54 
_chem_comp.id                GD4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5S)-5-[(4-{[(2R)-6-hydroxy-2,5,7,8-tetramethyl-3,4-dihydro-2H-1-benzopyran-2-yl]methoxy}phenyl)methyl]-1,3-thiazolidine-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Troglitazone (isoform)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAX GD4 sing 83 n n 
CAB CAY GD4 sing 84 n n 
CAX CAY GD4 doub 85 n y 
CAX CBA GD4 sing 86 n y 
CAY CBC GD4 sing 87 n y 
OAG CBA GD4 sing 88 n n 
CBA CAZ GD4 doub 89 n y 
CBC OAR GD4 sing 90 n n 
CBC CBB GD4 doub 91 n y 
OAR CBE GD4 sing 92 n n 
CAZ CBB GD4 sing 93 n y 
CAZ CAC GD4 sing 94 n n 
CAD CBE GD4 sing 95 n n 
CBB CAL GD4 sing 96 n n 
CAM CBE GD4 sing 97 n n 
CAM CAL GD4 sing 98 n n 
CBE CAN GD4 sing 99 n n 
CAN OAQ GD4 sing 100 n n 
OAQ CAW GD4 sing 101 n n 
CAW CAJ GD4 doub 102 n y 
CAW CAK GD4 sing 103 n y 
CAJ CAH GD4 sing 104 n y 
CAK CAI GD4 doub 105 n y 
CAH CAV GD4 doub 106 n y 
CAI CAV GD4 sing 107 n y 
CAV CAO GD4 sing 108 n n 
CAO CBD GD4 sing 109 n n 
CBD SAS GD4 sing 110 n n 
CBD CAU GD4 sing 111 n n 
SAS CAT GD4 sing 112 n n 
OAF CAU GD4 doub 113 n n 
CAU NAP GD4 sing 114 n n 
CAT NAP GD4 sing 115 n n 
CAT OAE GD4 doub 116 n n 
CAM H1 GD4 sing 117 n n 
CAM H2 GD4 sing 118 n n 
CAL H3 GD4 sing 119 n n 
CAL H4 GD4 sing 120 n n 
CAC H5 GD4 sing 121 n n 
CAC H6 GD4 sing 122 n n 
CAC H7 GD4 sing 123 n n 
OAG H8 GD4 sing 124 n n 
CAA H9 GD4 sing 125 n n 
CAA H10 GD4 sing 126 n n 
CAA H11 GD4 sing 127 n n 
CAB H12 GD4 sing 128 n n 
CAB H13 GD4 sing 129 n n 
CAB H14 GD4 sing 130 n n 
CAD H15 GD4 sing 131 n n 
CAD H16 GD4 sing 132 n n 
CAD H17 GD4 sing 133 n n 
CAN H18 GD4 sing 134 n n 
CAN H19 GD4 sing 135 n n 
CAK H20 GD4 sing 136 n n 
CAI H21 GD4 sing 137 n n 
CAJ H22 GD4 sing 138 n n 
CAH H23 GD4 sing 139 n n 
CAO H24 GD4 sing 140 n n 
CAO H25 GD4 sing 141 n n 
CBD H26 GD4 sing 142 n n 
NAP H27 GD4 sing 143 n n 
#
_atom_sites.entry_id                     6DGO 
_atom_sites.fract_transf_matrix[1][1]    0.010775 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00231 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016111 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008612 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           GD4 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     501 
_pdbx_nonpoly_scheme.pdb_mon_id       GD4 
_pdbx_nonpoly_scheme.auth_mon_id      GD4 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAM GD4 . . . C 2 16.268 62.248 9.69 1 29.45 ? CAM GD4 501 A 1 
HETATM 2 C CAL GD4 . . . C 2 15.054 63.042 10.079 1 29.47 ? CAL GD4 501 A 1 
HETATM 3 C CBB GD4 . . . C 2 15.174 64.507 9.594 1 29.46 ? CBB GD4 501 A 1 
HETATM 4 C CAZ GD4 . . . C 2 14.013 65.29 9.456 1 29.46 ? CAZ GD4 501 A 1 
HETATM 5 C CAC GD4 . . . C 2 12.65 64.691 9.789 1 29.49 ? CAC GD4 501 A 1 
HETATM 6 C CBA GD4 . . . C 2 14.109 66.614 9.016 1 29.46 ? CBA GD4 501 A 1 
HETATM 7 O OAG GD4 . . . C 2 12.956 67.395 8.88 1 29.47 ? OAG GD4 501 A 1 
HETATM 8 C CAX GD4 . . . C 2 15.369 67.165 8.71 1 29.44 ? CAX GD4 501 A 1 
HETATM 9 C CAA GD4 . . . C 2 15.468 68.612 8.23 1 29.43 ? CAA GD4 501 A 1 
HETATM 10 C CAY GD4 . . . C 2 16.521 66.389 8.847 1 29.43 ? CAY GD4 501 A 1 
HETATM 11 C CAB GD4 . . . C 2 17.88 66.99 8.51 1 29.41 ? CAB GD4 501 A 1 
HETATM 12 C CBC GD4 . . . C 2 16.43 65.049 9.292 1 29.44 ? CBC GD4 501 A 1 
HETATM 13 O OAR GD4 . . . C 2 17.644 64.277 9.414 1 29.43 ? OAR GD4 501 A 1 
HETATM 14 C CBE GD4 . . . C 2 17.543 62.998 10.005 1 29.44 ? CBE GD4 501 A 1 
HETATM 15 C CAD GD4 . . . C 2 18.727 62.158 9.548 1 29.42 ? CAD GD4 501 A 1 
HETATM 16 C CAN GD4 . . . C 2 17.623 63.151 11.537 1 29.45 ? CAN GD4 501 A 1 
HETATM 17 O OAQ GD4 . . . C 2 17.737 61.878 12.1 1 29.46 ? OAQ GD4 501 A 1 
HETATM 18 C CAW GD4 . . . C 2 18.231 61.95 13.401 1 29.47 ? CAW GD4 501 A 1 
HETATM 19 C CAK GD4 . . . C 2 19.592 61.879 13.616 1 29.46 ? CAK GD4 501 A 1 
HETATM 20 C CAI GD4 . . . C 2 20.088 61.961 14.901 1 29.46 ? CAI GD4 501 A 1 
HETATM 21 C CAJ GD4 . . . C 2 17.359 62.109 14.459 1 29.49 ? CAJ GD4 501 A 1 
HETATM 22 C CAH GD4 . . . C 2 17.854 62.191 15.745 1 29.5 ? CAH GD4 501 A 1 
HETATM 23 C CAV GD4 . . . C 2 19.218 62.115 15.959 1 29.48 ? CAV GD4 501 A 1 
HETATM 24 C CAO GD4 . . . C 2 19.769 62.211 17.374 1 29.49 ? CAO GD4 501 A 1 
HETATM 25 C CBD GD4 . . . C 2 19.46 63.604 17.883 1 29.5 ? CBD GD4 501 A 1 
HETATM 26 S SAS GD4 . . . C 2 20.805 64.264 18.579 1 29.49 ? SAS GD4 501 A 1 
HETATM 27 C CAT GD4 . . . C 2 20.402 64.648 20.11 1 29.51 ? CAT GD4 501 A 1 
HETATM 28 O OAE GD4 . . . C 2 21.089 65.223 20.883 1 29.5 ? OAE GD4 501 A 1 
HETATM 29 N NAP GD4 . . . C 2 18.928 64.122 20.391 1 29.53 ? NAP GD4 501 A 1 
HETATM 30 C CAU GD4 . . . C 2 18.324 63.49 19.055 1 29.52 ? CAU GD4 501 A 1 
HETATM 31 O OAF GD4 . . . C 2 17.249 63.014 18.927 1 29.54 ? OAF GD4 501 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#