data_6DGQ
#
_model_server_result.job_id            k_lg1OilBdMyKHNWgXCMxA 
_model_server_result.datetime_utc      '2024-10-19 23:51:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dgq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6DGQ 
#
_exptl.entry_id    6DGQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.626 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(2-{4-[(2,4-dioxo-3,4-dihydro-2H-1lambda~4~,3-thiazol-5-yl)methyl]phenoxy}ethyl)-5-[(3R)-1,2-dithiolan-3-yl]pentanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.55 
_cell.angle_gamma         90 
_cell.entry_id            6DGQ 
_cell.length_a            92.2 
_cell.length_b            59.49 
_cell.length_c            116.73 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DGQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H26 N2 O4 S3' 
_chem_comp.formula_weight    454.626 
_chem_comp.id                GBV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(2-{4-[(2,4-dioxo-3,4-dihydro-2H-1lambda~4~,3-thiazol-5-yl)methyl]phenoxy}ethyl)-5-[(3R)-1,2-dithiolan-3-yl]pentanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S28 S29 GBV sing 83 n n 
S28 C27 GBV sing 84 n n 
S29 C25 GBV sing 85 n n 
C27 C26 GBV sing 86 n n 
C25 C24 GBV sing 87 n n 
C24 C23 GBV sing 88 n n 
C22 C21 GBV sing 89 n n 
C22 C23 GBV sing 90 n n 
C21 C19 GBV sing 91 n n 
O20 C19 GBV doub 92 n n 
C19 N18 GBV sing 93 n n 
N18 C17 GBV sing 94 n n 
C17 C16 GBV sing 95 n n 
C16 O15 GBV sing 96 n n 
O15 C03 GBV sing 97 n n 
C03 C02 GBV doub 98 n y 
C03 C04 GBV sing 99 n y 
C02 C01 GBV sing 100 n y 
C04 C05 GBV doub 101 n y 
C01 C06 GBV doub 102 n y 
C05 C06 GBV sing 103 n y 
C06 C07 GBV sing 104 n n 
C07 C08 GBV sing 105 n n 
S14 C08 GBV doub 106 n n 
S14 C12 GBV sing 107 n n 
C08 C09 GBV sing 108 n n 
C12 O13 GBV doub 109 n n 
C12 N11 GBV sing 110 n n 
C09 N11 GBV sing 111 n n 
C09 O10 GBV doub 112 n n 
C17 H1 GBV sing 113 n n 
C17 H2 GBV sing 114 n n 
C21 H3 GBV sing 115 n n 
C21 H4 GBV sing 116 n n 
C22 H5 GBV sing 117 n n 
C22 H6 GBV sing 118 n n 
C24 H7 GBV sing 119 n n 
C24 H8 GBV sing 120 n n 
C26 H9 GBV sing 121 n n 
C26 H10 GBV sing 122 n n 
C01 H12 GBV sing 123 n n 
C02 H13 GBV sing 124 n n 
C04 H14 GBV sing 125 n n 
C05 H15 GBV sing 126 n n 
C07 H16 GBV sing 127 n n 
C07 H17 GBV sing 128 n n 
C16 H18 GBV sing 129 n n 
C16 H19 GBV sing 130 n n 
C23 H20 GBV sing 131 n n 
C23 H21 GBV sing 132 n n 
C25 H22 GBV sing 133 n n 
C27 H24 GBV sing 134 n n 
C27 H25 GBV sing 135 n n 
N11 H26 GBV sing 136 n n 
N18 H27 GBV sing 137 n n 
C26 C25 GBV sing 138 n n 
S14 H11 GBV sing 139 n n 
#
_atom_sites.entry_id                     6DGQ 
_atom_sites.fract_transf_matrix[1][1]    0.010846 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002614 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01681 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008812 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GBV A 1 501 501 GBV LIG . 
D 3 HOH A 1 601 184 HOH HOH . 
D 3 HOH A 2 602 178 HOH HOH . 
D 3 HOH A 3 603 58 HOH HOH . 
D 3 HOH A 4 604 105 HOH HOH . 
D 3 HOH A 5 605 1 HOH HOH . 
D 3 HOH A 6 606 120 HOH HOH . 
D 3 HOH A 7 607 121 HOH HOH . 
D 3 HOH A 8 608 47 HOH HOH . 
D 3 HOH A 9 609 169 HOH HOH . 
D 3 HOH A 10 610 63 HOH HOH . 
D 3 HOH A 11 611 32 HOH HOH . 
D 3 HOH A 12 612 174 HOH HOH . 
D 3 HOH A 13 613 90 HOH HOH . 
D 3 HOH A 14 614 183 HOH HOH . 
D 3 HOH A 15 615 106 HOH HOH . 
D 3 HOH A 16 616 65 HOH HOH . 
D 3 HOH A 17 617 99 HOH HOH . 
D 3 HOH A 18 618 151 HOH HOH . 
D 3 HOH A 19 619 149 HOH HOH . 
D 3 HOH A 20 620 123 HOH HOH . 
D 3 HOH A 21 621 130 HOH HOH . 
D 3 HOH A 22 622 11 HOH HOH . 
D 3 HOH A 23 623 66 HOH HOH . 
D 3 HOH A 24 624 128 HOH HOH . 
D 3 HOH A 25 625 100 HOH HOH . 
D 3 HOH A 26 626 34 HOH HOH . 
D 3 HOH A 27 627 148 HOH HOH . 
D 3 HOH A 28 628 6 HOH HOH . 
D 3 HOH A 29 629 16 HOH HOH . 
D 3 HOH A 30 630 165 HOH HOH . 
D 3 HOH A 31 631 142 HOH HOH . 
D 3 HOH A 32 632 48 HOH HOH . 
D 3 HOH A 33 633 59 HOH HOH . 
D 3 HOH A 34 634 5 HOH HOH . 
D 3 HOH A 35 635 126 HOH HOH . 
D 3 HOH A 36 636 3 HOH HOH . 
D 3 HOH A 37 637 33 HOH HOH . 
D 3 HOH A 38 638 25 HOH HOH . 
D 3 HOH A 39 639 111 HOH HOH . 
D 3 HOH A 40 640 37 HOH HOH . 
D 3 HOH A 41 641 24 HOH HOH . 
D 3 HOH A 42 642 50 HOH HOH . 
D 3 HOH A 43 643 140 HOH HOH . 
D 3 HOH A 44 644 49 HOH HOH . 
D 3 HOH A 45 645 64 HOH HOH . 
D 3 HOH A 46 646 79 HOH HOH . 
D 3 HOH A 47 647 87 HOH HOH . 
D 3 HOH A 48 648 21 HOH HOH . 
D 3 HOH A 49 649 15 HOH HOH . 
D 3 HOH A 50 650 175 HOH HOH . 
D 3 HOH A 51 651 88 HOH HOH . 
D 3 HOH A 52 652 20 HOH HOH . 
D 3 HOH A 53 653 160 HOH HOH . 
D 3 HOH A 54 654 9 HOH HOH . 
D 3 HOH A 55 655 31 HOH HOH . 
D 3 HOH A 56 656 30 HOH HOH . 
D 3 HOH A 57 657 56 HOH HOH . 
D 3 HOH A 58 658 113 HOH HOH . 
D 3 HOH A 59 659 14 HOH HOH . 
D 3 HOH A 60 660 115 HOH HOH . 
D 3 HOH A 61 661 97 HOH HOH . 
D 3 HOH A 62 662 28 HOH HOH . 
D 3 HOH A 63 663 46 HOH HOH . 
D 3 HOH A 64 664 74 HOH HOH . 
D 3 HOH A 65 665 153 HOH HOH . 
D 3 HOH A 66 666 112 HOH HOH . 
D 3 HOH A 67 667 143 HOH HOH . 
D 3 HOH A 68 668 93 HOH HOH . 
D 3 HOH A 69 669 17 HOH HOH . 
D 3 HOH A 70 670 42 HOH HOH . 
D 3 HOH A 71 671 133 HOH HOH . 
D 3 HOH A 72 672 10 HOH HOH . 
D 3 HOH A 73 673 52 HOH HOH . 
D 3 HOH A 74 674 61 HOH HOH . 
D 3 HOH A 75 675 27 HOH HOH . 
D 3 HOH A 76 676 51 HOH HOH . 
D 3 HOH A 77 677 150 HOH HOH . 
D 3 HOH A 78 678 167 HOH HOH . 
D 3 HOH A 79 679 101 HOH HOH . 
D 3 HOH A 80 680 170 HOH HOH . 
D 3 HOH A 81 681 134 HOH HOH . 
D 3 HOH A 82 682 102 HOH HOH . 
D 3 HOH A 83 683 35 HOH HOH . 
D 3 HOH A 84 684 127 HOH HOH . 
D 3 HOH A 85 685 146 HOH HOH . 
D 3 HOH A 86 686 72 HOH HOH . 
D 3 HOH A 87 687 103 HOH HOH . 
D 3 HOH A 88 688 172 HOH HOH . 
D 3 HOH A 89 689 26 HOH HOH . 
D 3 HOH A 90 690 171 HOH HOH . 
D 3 HOH A 91 691 80 HOH HOH . 
D 3 HOH A 92 692 109 HOH HOH . 
D 3 HOH A 93 693 116 HOH HOH . 
D 3 HOH A 94 694 139 HOH HOH . 
D 3 HOH A 95 695 71 HOH HOH . 
D 3 HOH A 96 696 55 HOH HOH . 
D 3 HOH A 97 697 176 HOH HOH . 
D 3 HOH A 98 698 91 HOH HOH . 
D 3 HOH A 99 699 110 HOH HOH . 
E 3 HOH B 1 501 94 HOH HOH . 
E 3 HOH B 2 502 182 HOH HOH . 
E 3 HOH B 3 503 141 HOH HOH . 
E 3 HOH B 4 504 108 HOH HOH . 
E 3 HOH B 5 505 68 HOH HOH . 
E 3 HOH B 6 506 23 HOH HOH . 
E 3 HOH B 7 507 57 HOH HOH . 
E 3 HOH B 8 508 164 HOH HOH . 
E 3 HOH B 9 509 54 HOH HOH . 
E 3 HOH B 10 510 122 HOH HOH . 
E 3 HOH B 11 511 8 HOH HOH . 
E 3 HOH B 12 512 22 HOH HOH . 
E 3 HOH B 13 513 75 HOH HOH . 
E 3 HOH B 14 514 44 HOH HOH . 
E 3 HOH B 15 515 40 HOH HOH . 
E 3 HOH B 16 516 2 HOH HOH . 
E 3 HOH B 17 517 187 HOH HOH . 
E 3 HOH B 18 518 13 HOH HOH . 
E 3 HOH B 19 519 78 HOH HOH . 
E 3 HOH B 20 520 18 HOH HOH . 
E 3 HOH B 21 521 107 HOH HOH . 
E 3 HOH B 22 522 104 HOH HOH . 
E 3 HOH B 23 523 89 HOH HOH . 
E 3 HOH B 24 524 45 HOH HOH . 
E 3 HOH B 25 525 152 HOH HOH . 
E 3 HOH B 26 526 7 HOH HOH . 
E 3 HOH B 27 527 29 HOH HOH . 
E 3 HOH B 28 528 4 HOH HOH . 
E 3 HOH B 29 529 19 HOH HOH . 
E 3 HOH B 30 530 155 HOH HOH . 
E 3 HOH B 31 531 70 HOH HOH . 
E 3 HOH B 32 532 163 HOH HOH . 
E 3 HOH B 33 533 76 HOH HOH . 
E 3 HOH B 34 534 83 HOH HOH . 
E 3 HOH B 35 535 73 HOH HOH . 
E 3 HOH B 36 536 156 HOH HOH . 
E 3 HOH B 37 537 95 HOH HOH . 
E 3 HOH B 38 538 131 HOH HOH . 
E 3 HOH B 39 539 41 HOH HOH . 
E 3 HOH B 40 540 166 HOH HOH . 
E 3 HOH B 41 541 60 HOH HOH . 
E 3 HOH B 42 542 162 HOH HOH . 
E 3 HOH B 43 543 86 HOH HOH . 
E 3 HOH B 44 544 96 HOH HOH . 
E 3 HOH B 45 545 136 HOH HOH . 
E 3 HOH B 46 546 38 HOH HOH . 
E 3 HOH B 47 547 154 HOH HOH . 
E 3 HOH B 48 548 12 HOH HOH . 
E 3 HOH B 49 549 39 HOH HOH . 
E 3 HOH B 50 550 98 HOH HOH . 
E 3 HOH B 51 551 82 HOH HOH . 
E 3 HOH B 52 552 85 HOH HOH . 
E 3 HOH B 53 553 43 HOH HOH . 
E 3 HOH B 54 554 84 HOH HOH . 
E 3 HOH B 55 555 62 HOH HOH . 
E 3 HOH B 56 556 67 HOH HOH . 
E 3 HOH B 57 557 185 HOH HOH . 
E 3 HOH B 58 558 36 HOH HOH . 
E 3 HOH B 59 559 81 HOH HOH . 
E 3 HOH B 60 560 186 HOH HOH . 
E 3 HOH B 61 561 53 HOH HOH . 
E 3 HOH B 62 562 118 HOH HOH . 
E 3 HOH B 63 563 132 HOH HOH . 
E 3 HOH B 64 564 137 HOH HOH . 
E 3 HOH B 65 565 144 HOH HOH . 
E 3 HOH B 66 566 177 HOH HOH . 
E 3 HOH B 67 567 69 HOH HOH . 
E 3 HOH B 68 568 157 HOH HOH . 
E 3 HOH B 69 569 145 HOH HOH . 
E 3 HOH B 70 570 158 HOH HOH . 
E 3 HOH B 71 571 135 HOH HOH . 
E 3 HOH B 72 572 114 HOH HOH . 
E 3 HOH B 73 573 92 HOH HOH . 
E 3 HOH B 74 574 77 HOH HOH . 
E 3 HOH B 75 575 117 HOH HOH . 
E 3 HOH B 76 576 125 HOH HOH . 
E 3 HOH B 77 577 138 HOH HOH . 
E 3 HOH B 78 578 159 HOH HOH . 
E 3 HOH B 79 579 161 HOH HOH . 
E 3 HOH B 80 580 119 HOH HOH . 
E 3 HOH B 81 581 168 HOH HOH . 
E 3 HOH B 82 582 173 HOH HOH . 
E 3 HOH B 83 583 179 HOH HOH . 
E 3 HOH B 84 584 124 HOH HOH . 
E 3 HOH B 85 585 147 HOH HOH . 
E 3 HOH B 86 586 180 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C17 GBV . . . C 2 17.069 60.994 10.656 1 36.12 ? C17 GBV 501 A 1 
HETATM 2 C C21 GBV . . . C 2 16.374 64.572 9.46 1 27.6 ? C21 GBV 501 A 1 
HETATM 3 C C22 GBV . . . C 2 17.358 65.712 9.171 1 37.43 ? C22 GBV 501 A 1 
HETATM 4 C C24 GBV . . . C 2 16.493 67.899 8.283 1 45.17 ? C24 GBV 501 A 1 
HETATM 5 C C26 GBV . . . C 2 17.259 70.579 8.693 1 55.16 ? C26 GBV 501 A 1 
HETATM 6 C C01 GBV . . . C 2 16.786 61.813 15.257 1 31.21 ? C01 GBV 501 A 1 
HETATM 7 C C02 GBV . . . C 2 17.035 61.354 13.984 1 33.21 ? C02 GBV 501 A 1 
HETATM 8 C C03 GBV . . . C 2 18.254 60.765 13.733 1 34.51 ? C03 GBV 501 A 1 
HETATM 9 C C04 GBV . . . C 2 19.245 60.63 14.694 1 32.49 ? C04 GBV 501 A 1 
HETATM 10 C C05 GBV . . . C 2 18.977 61.087 15.974 1 35.54 ? C05 GBV 501 A 1 
HETATM 11 C C06 GBV . . . C 2 17.751 61.683 16.237 1 31.94 ? C06 GBV 501 A 1 
HETATM 12 C C07 GBV . . . C 2 17.403 62.243 17.606 1 36.54 ? C07 GBV 501 A 1 
HETATM 13 C C08 GBV . . . C 2 18.599 62.799 18.36 1 29.84 ? C08 GBV 501 A 1 
HETATM 14 C C09 GBV . . . C 2 18.659 62.871 19.756 1 28.2 ? C09 GBV 501 A 1 
HETATM 15 C C12 GBV . . . C 2 20.701 63.733 19.335 1 30.12 ? C12 GBV 501 A 1 
HETATM 16 C C16 GBV . . . C 2 18.224 61.366 11.572 1 35.34 ? C16 GBV 501 A 1 
HETATM 17 C C19 GBV . . . C 2 17.132 63.278 9.744 1 31.31 ? C19 GBV 501 A 1 
HETATM 18 C C23 GBV . . . C 2 16.745 67.059 9.525 1 38.58 ? C23 GBV 501 A 1 
HETATM 19 C C25 GBV . . . C 2 17.584 68.741 8.045 1 55.38 ? C25 GBV 501 A 1 
HETATM 20 C C27 GBV . . . C 2 18.338 71.493 7.944 1 62.35 ? C27 GBV 501 A 1 
HETATM 21 N N11 GBV . . . C 2 19.814 63.371 20.258 1 29.23 ? N11 GBV 501 A 1 
HETATM 22 N N18 GBV . . . C 2 16.374 62.222 10.36 1 36.55 ? N18 GBV 501 A 1 
HETATM 23 O O10 GBV . . . C 2 17.606 62.452 20.56 1 23.26 ? O10 GBV 501 A 1 
HETATM 24 O O13 GBV . . . C 2 21.943 64.268 19.628 1 38.84 ? O13 GBV 501 A 1 
HETATM 25 O O15 GBV . . . C 2 18.442 60.316 12.448 1 38.95 ? O15 GBV 501 A 1 
HETATM 26 O O20 GBV . . . C 2 18.292 63.125 9.478 1 29.7 ? O20 GBV 501 A 1 
HETATM 27 S S14 GBV . . . C 2 20.059 63.459 17.79 1 31.34 ? S14 GBV 501 A 1 
HETATM 28 S S28 GBV . . . C 2 18.936 70.516 6.505 1 71.56 ? S28 GBV 501 A 1 
HETATM 29 S S29 GBV . . . C 2 17.816 68.948 6.535 1 86.74 ? S29 GBV 501 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           29 
#