data_6DGX # _model_server_result.job_id 4bUQSgyhaGg6gqHb6Wm8qg _model_server_result.datetime_utc '2024-11-05 04:18:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dgx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 6DGX # _exptl.entry_id 6DGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 547.664 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DGX _cell.length_a 51.005 _cell.length_b 58.298 _cell.length_c 61.931 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H37 N3 O7 S' _chem_comp.formula_weight 547.664 _chem_comp.id 017 _chem_comp.mon_nstd_flag . _chem_comp.name (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Darunavir;TMC114;UIC-94017 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 017 sing 1 n n N1 H11 017 sing 2 n n N1 H12 017 sing 3 n n C2 C3 017 doub 4 n y C2 C7 017 sing 5 n y C3 C4 017 sing 6 n y C3 H3 017 sing 7 n n C4 C5 017 doub 8 n y C4 H4 017 sing 9 n n C5 C6 017 sing 10 n y C5 S8 017 sing 11 n n C6 C7 017 doub 12 n y C6 H6 017 sing 13 n n C7 H7 017 sing 14 n n S8 O9 017 doub 15 n n S8 O10 017 doub 16 n n S8 N11 017 sing 17 n n N11 C12 017 sing 18 n n N11 C16 017 sing 19 n n C12 C13 017 sing 20 n n C12 H121 017 sing 21 n n C12 H122 017 sing 22 n n C13 C14 017 sing 23 n n C13 C15 017 sing 24 n n C13 H13 017 sing 25 n n C14 H141 017 sing 26 n n C14 H142 017 sing 27 n n C14 H143 017 sing 28 n n C15 H151 017 sing 29 n n C15 H152 017 sing 30 n n C15 H153 017 sing 31 n n C16 C17 017 sing 32 n n C16 H161 017 sing 33 n n C16 H162 017 sing 34 n n C17 O18 017 sing 35 n n C17 C19 017 sing 36 n n C17 H17 017 sing 37 n n O18 H18 017 sing 38 n n C19 N20 017 sing 39 n n C19 C32 017 sing 40 n n C19 H19 017 sing 41 n n N20 C21 017 sing 42 n n N20 H20 017 sing 43 n n C21 O22 017 doub 44 n n C21 O23 017 sing 45 n n O23 C24 017 sing 46 n n C24 C25 017 sing 47 n n C24 C31 017 sing 48 n n C24 H24 017 sing 49 n n C25 O26 017 sing 50 n n C25 H251 017 sing 51 n n C25 H252 017 sing 52 n n O26 C27 017 sing 53 n n C27 O28 017 sing 54 n n C27 C31 017 sing 55 n n C27 H27 017 sing 56 n n O28 C29 017 sing 57 n n C29 C30 017 sing 58 n n C29 H291 017 sing 59 n n C29 H292 017 sing 60 n n C30 C31 017 sing 61 n n C30 H301 017 sing 62 n n C30 H302 017 sing 63 n n C31 H31 017 sing 64 n n C32 C38 017 sing 65 n n C32 H321 017 sing 66 n n C32 H322 017 sing 67 n n C33 C34 017 doub 68 n y C33 C38 017 sing 69 n y C33 H33 017 sing 70 n n C34 C35 017 sing 71 n y C34 H34 017 sing 72 n n C35 C36 017 doub 73 n y C35 H35 017 sing 74 n n C36 C37 017 sing 75 n y C36 H36 017 sing 76 n n C37 C38 017 doub 77 n y C37 H37 017 sing 78 n n # _atom_sites.entry_id 6DGX _atom_sites.fract_transf_matrix[1][1] 0.019606 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 017 A 1 101 1 017 017 . D 3 SO4 A 1 102 1 SO4 SO4 . E 4 HOH B 1 101 27 HOH HOH . E 4 HOH B 2 102 108 HOH HOH . E 4 HOH B 3 103 41 HOH HOH . E 4 HOH B 4 104 100 HOH HOH . E 4 HOH B 5 105 50 HOH HOH . E 4 HOH B 6 106 86 HOH HOH . E 4 HOH B 7 107 80 HOH HOH . E 4 HOH B 8 108 40 HOH HOH . E 4 HOH B 9 109 76 HOH HOH . E 4 HOH B 10 110 8 HOH HOH . E 4 HOH B 11 111 32 HOH HOH . E 4 HOH B 12 112 31 HOH HOH . E 4 HOH B 13 113 104 HOH HOH . E 4 HOH B 14 114 19 HOH HOH . E 4 HOH B 15 115 53 HOH HOH . E 4 HOH B 16 116 46 HOH HOH . E 4 HOH B 17 117 107 HOH HOH . E 4 HOH B 18 118 71 HOH HOH . E 4 HOH B 19 119 9 HOH HOH . E 4 HOH B 20 120 61 HOH HOH . E 4 HOH B 21 121 16 HOH HOH . E 4 HOH B 22 122 36 HOH HOH . E 4 HOH B 23 123 56 HOH HOH . E 4 HOH B 24 124 120 HOH HOH . E 4 HOH B 25 125 72 HOH HOH . E 4 HOH B 26 126 57 HOH HOH . E 4 HOH B 27 127 75 HOH HOH . E 4 HOH B 28 128 28 HOH HOH . E 4 HOH B 29 129 88 HOH HOH . E 4 HOH B 30 130 30 HOH HOH . E 4 HOH B 31 131 17 HOH HOH . E 4 HOH B 32 132 33 HOH HOH . E 4 HOH B 33 133 84 HOH HOH . E 4 HOH B 34 134 51 HOH HOH . E 4 HOH B 35 135 25 HOH HOH . E 4 HOH B 36 136 67 HOH HOH . E 4 HOH B 37 137 96 HOH HOH . E 4 HOH B 38 138 106 HOH HOH . E 4 HOH B 39 139 85 HOH HOH . E 4 HOH B 40 140 81 HOH HOH . E 4 HOH B 41 141 73 HOH HOH . E 4 HOH B 42 142 38 HOH HOH . E 4 HOH B 43 143 99 HOH HOH . E 4 HOH B 44 144 62 HOH HOH . E 4 HOH B 45 145 48 HOH HOH . E 4 HOH B 46 146 74 HOH HOH . E 4 HOH B 47 147 69 HOH HOH . E 4 HOH B 48 148 79 HOH HOH . E 4 HOH B 49 149 126 HOH HOH . E 4 HOH B 50 150 109 HOH HOH . E 4 HOH B 51 151 98 HOH HOH . E 4 HOH B 52 152 105 HOH HOH . F 4 HOH A 1 201 68 HOH HOH . F 4 HOH A 2 202 12 HOH HOH . F 4 HOH A 3 203 94 HOH HOH . F 4 HOH A 4 204 14 HOH HOH . F 4 HOH A 5 205 21 HOH HOH . F 4 HOH A 6 206 117 HOH HOH . F 4 HOH A 7 207 11 HOH HOH . F 4 HOH A 8 208 64 HOH HOH . F 4 HOH A 9 209 39 HOH HOH . F 4 HOH A 10 210 29 HOH HOH . F 4 HOH A 11 211 15 HOH HOH . F 4 HOH A 12 212 10 HOH HOH . F 4 HOH A 13 213 35 HOH HOH . F 4 HOH A 14 214 18 HOH HOH . F 4 HOH A 15 215 101 HOH HOH . F 4 HOH A 16 216 34 HOH HOH . F 4 HOH A 17 217 114 HOH HOH . F 4 HOH A 18 218 4 HOH HOH . F 4 HOH A 19 219 55 HOH HOH . F 4 HOH A 20 220 90 HOH HOH . F 4 HOH A 21 221 23 HOH HOH . F 4 HOH A 22 222 22 HOH HOH . F 4 HOH A 23 223 121 HOH HOH . F 4 HOH A 24 224 24 HOH HOH . F 4 HOH A 25 225 87 HOH HOH . F 4 HOH A 26 226 118 HOH HOH . F 4 HOH A 27 227 37 HOH HOH . F 4 HOH A 28 228 103 HOH HOH . F 4 HOH A 29 229 7 HOH HOH . F 4 HOH A 30 230 49 HOH HOH . F 4 HOH A 31 231 20 HOH HOH . F 4 HOH A 32 232 63 HOH HOH . F 4 HOH A 33 233 119 HOH HOH . F 4 HOH A 34 234 127 HOH HOH . F 4 HOH A 35 235 93 HOH HOH . F 4 HOH A 36 236 122 HOH HOH . F 4 HOH A 37 237 125 HOH HOH . F 4 HOH A 38 238 123 HOH HOH . F 4 HOH A 39 239 97 HOH HOH . F 4 HOH A 40 240 102 HOH HOH . F 4 HOH A 41 241 47 HOH HOH . F 4 HOH A 42 242 59 HOH HOH . F 4 HOH A 43 243 58 HOH HOH . F 4 HOH A 44 244 113 HOH HOH . F 4 HOH A 45 245 92 HOH HOH . F 4 HOH A 46 246 124 HOH HOH . F 4 HOH A 47 247 95 HOH HOH . F 4 HOH A 48 248 91 HOH HOH . F 4 HOH A 49 249 116 HOH HOH . F 4 HOH A 50 250 112 HOH HOH . F 4 HOH A 51 251 89 HOH HOH . F 4 HOH A 52 252 83 HOH HOH . F 4 HOH A 53 253 45 HOH HOH . F 4 HOH A 54 254 82 HOH HOH . F 4 HOH A 55 255 52 HOH HOH . F 4 HOH A 56 256 54 HOH HOH . F 4 HOH A 57 257 115 HOH HOH . F 4 HOH A 58 258 110 HOH HOH . F 4 HOH A 59 259 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 017 . . . C 2 65.331 52.076 12.595 1 28.39 ? N1 017 101 A 1 HETATM 2 C C2 017 . . . C 2 66.326 52.736 13.483 1 22.82 ? C2 017 101 A 1 HETATM 3 C C3 017 . . . C 2 67.407 52.024 13.959 1 24.58 ? C3 017 101 A 1 HETATM 4 C C4 017 . . . C 2 68.323 52.639 14.779 1 23.71 ? C4 017 101 A 1 HETATM 5 C C5 017 . . . C 2 68.146 53.979 15.129 1 24.78 ? C5 017 101 A 1 HETATM 6 C C6 017 . . . C 2 67.081 54.688 14.658 1 23.37 ? C6 017 101 A 1 HETATM 7 C C7 017 . . . C 2 66.153 54.066 13.829 1 24.97 ? C7 017 101 A 1 HETATM 8 S S8 017 . . . C 2 69.368 54.809 16.218 1 24.3 ? S8 017 101 A 1 HETATM 9 O O9 017 . . . C 2 69.906 53.918 17.227 1 25.55 ? O9 017 101 A 1 HETATM 10 O O10 017 . . . C 2 68.712 55.88 17.01 1 23.62 ? O10 017 101 A 1 HETATM 11 N N11 017 . . . C 2 70.606 55.454 15.197 1 25.38 ? N11 017 101 A 1 HETATM 12 C C12 017 . . . C 2 71.388 54.482 14.41 1 27.35 ? C12 017 101 A 1 HETATM 13 C C13 017 . . . C 2 72.884 54.803 14.483 1 26.05 ? C13 017 101 A 1 HETATM 14 C C14 017 . . . C 2 73.419 54.714 15.955 1 23.79 ? C14 017 101 A 1 HETATM 15 C C15 017 . . . C 2 73.678 53.883 13.529 1 32.29 ? C15 017 101 A 1 HETATM 16 C C16 017 . . . C 2 70.295 56.819 14.552 1 21.1 ? C16 017 101 A 1 HETATM 17 C C17 017 . . . C 2 71.209 57.936 15.144 1 19.81 ? C17 017 101 A 1 HETATM 18 O O18 017 . . . C 2 71.059 59.08 14.388 1 22.8 ? O18 017 101 A 1 HETATM 19 C C19 017 . . . C 2 70.852 58.247 16.607 1 22.05 ? C19 017 101 A 1 HETATM 20 N N20 017 . . . C 2 71.78 59.252 17.071 1 23.19 ? N20 017 101 A 1 HETATM 21 C C21 017 . . . C 2 72.816 58.942 18.062 1 26.44 ? C21 017 101 A 1 HETATM 22 O O22 017 . . . C 2 72.875 57.869 18.579 1 25.51 ? O22 017 101 A 1 HETATM 23 O O23 017 . . . C 2 73.705 59.972 18.361 1 26.76 ? O23 017 101 A 1 HETATM 24 C C24 017 . . . C 2 74.447 59.884 19.564 1 27.85 ? C24 017 101 A 1 HETATM 25 C C25 017 . . . C 2 75.963 60.466 19.234 1 28.84 ? C25 017 101 A 1 HETATM 26 O O26 017 . . . C 2 75.787 61.789 19.138 1 24.66 ? O26 017 101 A 1 HETATM 27 C C27 017 . . . C 2 74.629 62.117 20.159 1 28.72 ? C27 017 101 A 1 HETATM 28 O O28 017 . . . C 2 73.729 62.804 19.616 1 26.12 ? O28 017 101 A 1 HETATM 29 C C29 017 . . . C 2 72.302 62.035 19.792 1 28.17 ? C29 017 101 A 1 HETATM 30 C C30 017 . . . C 2 72.511 60.952 20.513 1 32.95 ? C30 017 101 A 1 HETATM 31 C C31 017 . . . C 2 73.992 60.71 20.516 1 26.78 ? C31 017 101 A 1 HETATM 32 C C32 017 . . . C 2 69.453 58.845 16.738 1 24.06 ? C32 017 101 A 1 HETATM 33 C C33 017 . . . C 2 68.899 58.454 19.158 1 26.13 ? C33 017 101 A 1 HETATM 34 C C34 017 . . . C 2 68.66 58.912 20.465 1 23.43 ? C34 017 101 A 1 HETATM 35 C C35 017 . . . C 2 68.721 60.288 20.752 1 30.68 ? C35 017 101 A 1 HETATM 36 C C36 017 . . . C 2 69.015 61.188 19.751 1 25.19 ? C36 017 101 A 1 HETATM 37 C C37 017 . . . C 2 69.253 60.732 18.447 1 26.84 ? C37 017 101 A 1 HETATM 38 C C38 017 . . . C 2 69.191 59.348 18.158 1 21.14 ? C38 017 101 A 1 HETATM 39 H H11 017 . . . C 2 65.59 51.695 11.86 1 34.13 ? H11 017 101 A 1 HETATM 40 H H12 017 . . . C 2 64.491 52.072 12.812 1 34.13 ? H12 017 101 A 1 HETATM 41 H H3 017 . . . C 2 67.517 51.132 13.725 1 29.56 ? H3 017 101 A 1 HETATM 42 H H4 017 . . . C 2 69.054 52.165 15.102 1 28.52 ? H4 017 101 A 1 HETATM 43 H H6 017 . . . C 2 66.973 55.58 14.894 1 28.11 ? H6 017 101 A 1 HETATM 44 H H7 017 . . . C 2 65.423 54.541 13.506 1 30.03 ? H7 017 101 A 1 HETATM 45 H H121 017 . . . C 2 71.108 54.514 13.515 1 32.88 ? H121 017 101 A 1 HETATM 46 H H122 017 . . . C 2 71.241 53.619 14.749 1 32.88 ? H122 017 101 A 1 HETATM 47 H H13 017 . . . C 2 73.001 55.687 14.189 1 31.32 ? H13 017 101 A 1 HETATM 48 H H141 017 . . . C 2 74.17 54.15 15.984 1 28.61 ? H141 017 101 A 1 HETATM 49 H H142 017 . . . C 2 73.66 55.571 16.253 1 28.61 ? H142 017 101 A 1 HETATM 50 H H143 017 . . . C 2 72.746 54.368 16.511 1 28.61 ? H143 017 101 A 1 HETATM 51 H H151 017 . . . C 2 73.524 54.145 12.64 1 38.81 ? H151 017 101 A 1 HETATM 52 H H152 017 . . . C 2 74.592 53.961 13.722 1 38.81 ? H152 017 101 A 1 HETATM 53 H H153 017 . . . C 2 73.405 52.992 13.648 1 38.81 ? H153 017 101 A 1 HETATM 54 H H161 017 . . . C 2 70.44 56.762 13.626 1 25.38 ? H161 017 101 A 1 HETATM 55 H H162 017 . . . C 2 69.395 57.035 14.707 1 25.38 ? H162 017 101 A 1 HETATM 56 H H17 017 . . . C 2 72.104 57.656 15.1 1 23.84 ? H17 017 101 A 1 HETATM 57 H H18 017 . . . C 2 71.232 58.911 13.592 1 27.42 ? H18 017 101 A 1 HETATM 58 H H19 017 . . . C 2 70.924 57.472 17.132 1 26.53 ? H19 017 101 A 1 HETATM 59 H H20 017 . . . C 2 71.723 60.059 16.756 1 27.89 ? H20 017 101 A 1 HETATM 60 H H24 017 . . . C 2 74.493 59.001 19.879 1 33.49 ? H24 017 101 A 1 HETATM 61 H H251 017 . . . C 2 76.278 60.117 18.421 1 34.68 ? H251 017 101 A 1 HETATM 62 H H252 017 . . . C 2 76.552 60.263 19.937 1 34.68 ? H252 017 101 A 1 HETATM 63 H H27 017 . . . C 2 74.963 62.541 20.927 1 34.53 ? H27 017 101 A 1 HETATM 64 H H291 017 . . . C 2 71.967 61.795 18.949 1 33.87 ? H291 017 101 A 1 HETATM 65 H H292 017 . . . C 2 71.693 62.597 20.234 1 33.87 ? H292 017 101 A 1 HETATM 66 H H301 017 . . . C 2 72.217 61.1 21.392 1 39.61 ? H301 017 101 A 1 HETATM 67 H H302 017 . . . C 2 72.056 60.221 20.145 1 39.61 ? H302 017 101 A 1 HETATM 68 H H31 017 . . . C 2 74.278 60.425 21.364 1 32.2 ? H31 017 101 A 1 HETATM 69 H H321 017 . . . C 2 69.371 59.564 16.14 1 28.93 ? H321 017 101 A 1 HETATM 70 H H322 017 . . . C 2 68.814 58.194 16.522 1 28.93 ? H322 017 101 A 1 HETATM 71 H H33 017 . . . C 2 68.859 57.545 18.97 1 31.42 ? H33 017 101 A 1 HETATM 72 H H34 017 . . . C 2 68.462 58.305 21.14 1 28.18 ? H34 017 101 A 1 HETATM 73 H H35 017 . . . C 2 68.562 60.591 21.616 1 36.88 ? H35 017 101 A 1 HETATM 74 H H36 017 . . . C 2 69.055 62.096 19.941 1 30.29 ? H36 017 101 A 1 HETATM 75 H H37 017 . . . C 2 69.452 61.339 17.772 1 32.27 ? H37 017 101 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 75 #