data_6DH9
#
_model_server_result.job_id            EzkPPJeGi2Gwpo8yS4Da_g 
_model_server_result.datetime_utc      '2025-06-22 19:45:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dh9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6DH9 
#
_exptl.entry_id    6DH9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              371.407 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            (5S)-5-({4-[2-(3-methoxyphenyl)-2-oxoethoxy]phenyl}methyl)-1,3-thiazolidine-2,4-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.59 
_cell.angle_gamma         90 
_cell.entry_id            6DH9 
_cell.length_a            93.12 
_cell.length_b            60.2 
_cell.length_c            118.04 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DH9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H17 N O5 S' 
_chem_comp.formula_weight    371.407 
_chem_comp.id                GH1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5S)-5-({4-[2-(3-methoxyphenyl)-2-oxoethoxy]phenyl}methyl)-1,3-thiazolidine-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C05 C04 GH1 doub 83 n y 
C05 C06 GH1 sing 84 n y 
C04 C03 GH1 sing 85 n y 
C06 C07 GH1 doub 86 n y 
C01 O02 GH1 sing 87 n n 
C03 O02 GH1 sing 88 n n 
C03 C08 GH1 doub 89 n y 
C07 C08 GH1 sing 90 n y 
C07 C09 GH1 sing 91 n n 
C09 O10 GH1 doub 92 n n 
C09 C11 GH1 sing 93 n n 
C11 O12 GH1 sing 94 n n 
O12 C13 GH1 sing 95 n n 
C13 C18 GH1 doub 96 n y 
C13 C14 GH1 sing 97 n y 
C18 C17 GH1 sing 98 n y 
C14 C15 GH1 doub 99 n y 
C17 C16 GH1 doub 100 n y 
C15 C16 GH1 sing 101 n y 
C16 C19 GH1 sing 102 n n 
C19 C20 GH1 sing 103 n n 
S26 C20 GH1 sing 104 n n 
S26 C24 GH1 sing 105 n n 
C20 C21 GH1 sing 106 n n 
C24 O25 GH1 doub 107 n n 
C24 N23 GH1 sing 108 n n 
C21 N23 GH1 sing 109 n n 
C21 O22 GH1 doub 110 n n 
C15 H1 GH1 sing 111 n n 
C17 H2 GH1 sing 112 n n 
C01 H3 GH1 sing 113 n n 
C01 H4 GH1 sing 114 n n 
C01 H5 GH1 sing 115 n n 
C04 H6 GH1 sing 116 n n 
C05 H7 GH1 sing 117 n n 
C06 H8 GH1 sing 118 n n 
C08 H9 GH1 sing 119 n n 
C11 H11 GH1 sing 120 n n 
C11 H12 GH1 sing 121 n n 
C14 H13 GH1 sing 122 n n 
C18 H14 GH1 sing 123 n n 
C19 H15 GH1 sing 124 n n 
C19 H16 GH1 sing 125 n n 
N23 H17 GH1 sing 126 n n 
C20 H19 GH1 sing 127 n n 
#
_atom_sites.entry_id                     6DH9 
_atom_sites.fract_transf_matrix[1][1]    0.010739 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002596 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016611 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008716 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GH1 A 1 501 501 GH1 GH1 . 
D 3 KNA A 1 502 502 KNA KNA . 
E 4 HOH A 1 601 601 HOH HOH . 
E 4 HOH A 2 602 609 HOH HOH . 
E 4 HOH A 3 603 602 HOH HOH . 
E 4 HOH A 4 604 603 HOH HOH . 
E 4 HOH A 5 605 604 HOH HOH . 
E 4 HOH A 6 606 605 HOH HOH . 
E 4 HOH A 7 607 606 HOH HOH . 
E 4 HOH A 8 608 607 HOH HOH . 
E 4 HOH A 9 609 608 HOH HOH . 
E 4 HOH A 10 610 610 HOH HOH . 
E 4 HOH A 11 611 611 HOH HOH . 
E 4 HOH A 12 612 612 HOH HOH . 
E 4 HOH A 13 613 613 HOH HOH . 
E 4 HOH A 14 614 614 HOH HOH . 
E 4 HOH A 15 615 615 HOH HOH . 
E 4 HOH A 16 616 616 HOH HOH . 
E 4 HOH A 17 617 617 HOH HOH . 
E 4 HOH A 18 618 618 HOH HOH . 
E 4 HOH A 19 619 619 HOH HOH . 
E 4 HOH A 20 620 620 HOH HOH . 
E 4 HOH A 21 621 621 HOH HOH . 
E 4 HOH A 22 622 622 HOH HOH . 
E 4 HOH A 23 623 623 HOH HOH . 
E 4 HOH A 24 624 624 HOH HOH . 
E 4 HOH A 25 625 625 HOH HOH . 
E 4 HOH A 26 626 626 HOH HOH . 
E 4 HOH A 27 627 627 HOH HOH . 
E 4 HOH A 28 628 628 HOH HOH . 
E 4 HOH A 29 629 629 HOH HOH . 
E 4 HOH A 30 630 630 HOH HOH . 
E 4 HOH A 31 631 631 HOH HOH . 
E 4 HOH A 32 632 632 HOH HOH . 
E 4 HOH A 33 633 633 HOH HOH . 
E 4 HOH A 34 634 634 HOH HOH . 
E 4 HOH A 35 635 635 HOH HOH . 
E 4 HOH A 36 636 636 HOH HOH . 
E 4 HOH A 37 637 637 HOH HOH . 
E 4 HOH A 38 638 638 HOH HOH . 
E 4 HOH A 39 639 639 HOH HOH . 
E 4 HOH A 40 640 640 HOH HOH . 
E 4 HOH A 41 641 641 HOH HOH . 
E 4 HOH A 42 642 642 HOH HOH . 
E 4 HOH A 43 643 643 HOH HOH . 
E 4 HOH A 44 644 644 HOH HOH . 
E 4 HOH A 45 645 645 HOH HOH . 
E 4 HOH A 46 646 646 HOH HOH . 
E 4 HOH A 47 647 647 HOH HOH . 
E 4 HOH A 48 648 648 HOH HOH . 
E 4 HOH A 49 649 649 HOH HOH . 
E 4 HOH A 50 650 651 HOH HOH . 
E 4 HOH A 51 651 652 HOH HOH . 
E 4 HOH A 52 652 653 HOH HOH . 
E 4 HOH A 53 653 654 HOH HOH . 
E 4 HOH A 54 654 650 HOH HOH . 
E 4 HOH A 55 655 655 HOH HOH . 
E 4 HOH A 56 656 656 HOH HOH . 
E 4 HOH A 57 657 657 HOH HOH . 
E 4 HOH A 58 658 658 HOH HOH . 
E 4 HOH A 59 659 659 HOH HOH . 
E 4 HOH A 60 660 660 HOH HOH . 
E 4 HOH A 61 661 661 HOH HOH . 
E 4 HOH A 62 662 662 HOH HOH . 
E 4 HOH A 63 663 663 HOH HOH . 
F 4 HOH B 1 501 501 HOH HOH . 
F 4 HOH B 2 502 502 HOH HOH . 
F 4 HOH B 3 503 503 HOH HOH . 
F 4 HOH B 4 504 504 HOH HOH . 
F 4 HOH B 5 505 505 HOH HOH . 
F 4 HOH B 6 506 506 HOH HOH . 
F 4 HOH B 7 507 507 HOH HOH . 
F 4 HOH B 8 508 508 HOH HOH . 
F 4 HOH B 9 509 509 HOH HOH . 
F 4 HOH B 10 510 510 HOH HOH . 
F 4 HOH B 11 511 511 HOH HOH . 
F 4 HOH B 12 512 512 HOH HOH . 
F 4 HOH B 13 513 513 HOH HOH . 
F 4 HOH B 14 514 514 HOH HOH . 
F 4 HOH B 15 515 515 HOH HOH . 
F 4 HOH B 16 516 516 HOH HOH . 
F 4 HOH B 17 517 517 HOH HOH . 
F 4 HOH B 18 518 518 HOH HOH . 
F 4 HOH B 19 519 519 HOH HOH . 
F 4 HOH B 20 520 520 HOH HOH . 
F 4 HOH B 21 521 521 HOH HOH . 
F 4 HOH B 22 522 522 HOH HOH . 
F 4 HOH B 23 523 523 HOH HOH . 
F 4 HOH B 24 524 524 HOH HOH . 
F 4 HOH B 25 525 525 HOH HOH . 
F 4 HOH B 26 526 526 HOH HOH . 
F 4 HOH B 27 527 527 HOH HOH . 
F 4 HOH B 28 528 528 HOH HOH . 
F 4 HOH B 29 529 529 HOH HOH . 
F 4 HOH B 30 530 530 HOH HOH . 
F 4 HOH B 31 531 531 HOH HOH . 
F 4 HOH B 32 532 532 HOH HOH . 
F 4 HOH B 33 533 533 HOH HOH . 
F 4 HOH B 34 534 534 HOH HOH . 
F 4 HOH B 35 535 535 HOH HOH . 
F 4 HOH B 36 536 536 HOH HOH . 
F 4 HOH B 37 537 537 HOH HOH . 
F 4 HOH B 38 538 538 HOH HOH . 
F 4 HOH B 39 539 539 HOH HOH . 
F 4 HOH B 40 540 540 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 GH1 . . . C 2 17.504 61.215 13.8 1 30 ? C13 GH1 501 A 1 
HETATM 2 C C15 GH1 . . . C 2 18.924 60.945 15.686 1 30 ? C15 GH1 501 A 1 
HETATM 3 C C17 GH1 . . . C 2 16.726 61.796 15.927 1 30 ? C17 GH1 501 A 1 
HETATM 4 C C20 GH1 . . . C 2 18.514 62.913 18.412 1 30 ? C20 GH1 501 A 1 
HETATM 5 C C21 GH1 . . . C 2 19.011 62.984 19.728 1 30 ? C21 GH1 501 A 1 
HETATM 6 C C24 GH1 . . . C 2 20.757 64.091 18.737 1 30 ? C24 GH1 501 A 1 
HETATM 7 C C01 GH1 . . . C 2 17.261 68.088 9.148 1 30 ? C01 GH1 501 A 1 
HETATM 8 C C03 GH1 . . . C 2 17.373 65.827 9.423 1 30 ? C03 GH1 501 A 1 
HETATM 9 C C04 GH1 . . . C 2 18.515 65.811 8.708 1 30 ? C04 GH1 501 A 1 
HETATM 10 C C05 GH1 . . . C 2 19.191 64.637 8.571 1 30 ? C05 GH1 501 A 1 
HETATM 11 C C06 GH1 . . . C 2 18.772 63.472 9.139 1 30 ? C06 GH1 501 A 1 
HETATM 12 C C07 GH1 . . . C 2 17.627 63.507 9.854 1 30 ? C07 GH1 501 A 1 
HETATM 13 C C08 GH1 . . . C 2 16.95 64.686 9.991 1 30 ? C08 GH1 501 A 1 
HETATM 14 C C09 GH1 . . . C 2 17.077 62.25 10.493 1 30 ? C09 GH1 501 A 1 
HETATM 15 C C11 GH1 . . . C 2 17.993 61.806 11.603 1 30 ? C11 GH1 501 A 1 
HETATM 16 C C14 GH1 . . . C 2 18.702 60.838 14.334 1 30 ? C14 GH1 501 A 1 
HETATM 17 C C16 GH1 . . . C 2 17.915 61.444 16.457 1 30 ? C16 GH1 501 A 1 
HETATM 18 C C18 GH1 . . . C 2 16.51 61.694 14.606 1 30 ? C18 GH1 501 A 1 
HETATM 19 C C19 GH1 . . . C 2 18.096 61.52 17.921 1 30 ? C19 GH1 501 A 1 
HETATM 20 N N23 GH1 . . . C 2 20.212 63.621 19.866 1 30 ? N23 GH1 501 A 1 
HETATM 21 O O02 GH1 . . . C 2 16.633 66.956 9.597 1 30 ? O02 GH1 501 A 1 
HETATM 22 O O10 GH1 . . . C 2 15.757 62.52 10.879 1 30 ? O10 GH1 501 A 1 
HETATM 23 O O12 GH1 . . . C 2 17.269 61.083 12.469 1 30 ? O12 GH1 501 A 1 
HETATM 24 O O22 GH1 . . . C 2 18.321 62.441 20.819 1 30 ? O22 GH1 501 A 1 
HETATM 25 O O25 GH1 . . . C 2 21.975 64.776 18.619 1 30 ? O25 GH1 501 A 1 
HETATM 26 S S26 GH1 . . . C 2 19.693 63.7 17.48 1 30 ? S26 GH1 501 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#