data_6DHA
#
_model_server_result.job_id            7630zejulvt-OCo_vucwpg 
_model_server_result.datetime_utc      '2024-10-28 02:28:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dha 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    6DHA 
#
_exptl.entry_id    6DHA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              158.238 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.73 
_cell.angle_gamma         90 
_cell.entry_id            6DHA 
_cell.length_a            93.08 
_cell.length_b            61.85 
_cell.length_c            119.67 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DHA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C9 H18 O2' 
_chem_comp.formula_weight    158.238 
_chem_comp.id                KNA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'nonanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C1 KNA doub 221 n n 
C1 C2 KNA sing 222 n n 
C1 O1 KNA sing 223 n n 
O1 HO1 KNA sing 224 n n 
C3 C2 KNA sing 225 n n 
C2 H2 KNA sing 226 n n 
C2 H2A KNA sing 227 n n 
C3 C4 KNA sing 228 n n 
C3 H3 KNA sing 229 n n 
C3 H3A KNA sing 230 n n 
C5 C4 KNA sing 231 n n 
C4 H4 KNA sing 232 n n 
C4 H4A KNA sing 233 n n 
C5 C6 KNA sing 234 n n 
C5 H5 KNA sing 235 n n 
C5 H5A KNA sing 236 n n 
C6 C7 KNA sing 237 n n 
C6 H6 KNA sing 238 n n 
C6 H6A KNA sing 239 n n 
C7 C8 KNA sing 240 n n 
C7 H7 KNA sing 241 n n 
C7 H7A KNA sing 242 n n 
C8 C9 KNA sing 243 n n 
C8 H8 KNA sing 244 n n 
C8 H8A KNA sing 245 n n 
C9 H9 KNA sing 246 n n 
C9 H9A KNA sing 247 n n 
C9 H9B KNA sing 248 n n 
#
_atom_sites.entry_id                     6DHA 
_atom_sites.fract_transf_matrix[1][1]    0.010743 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002427 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016168 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008567 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GFV A 1 501 501 GFV GFV . 
D 3 KNA A 1 502 502 KNA KNA . 
E 3 KNA A 1 503 503 KNA KNA . 
F 2 GFV B 1 501 501 GFV GFV . 
G 4 HOH A 1 601 601 HOH HOH . 
G 4 HOH A 2 602 602 HOH HOH . 
G 4 HOH A 3 603 603 HOH HOH . 
G 4 HOH A 4 604 604 HOH HOH . 
G 4 HOH A 5 605 605 HOH HOH . 
G 4 HOH A 6 606 606 HOH HOH . 
G 4 HOH A 7 607 607 HOH HOH . 
G 4 HOH A 8 608 608 HOH HOH . 
G 4 HOH A 9 609 609 HOH HOH . 
G 4 HOH A 10 610 610 HOH HOH . 
G 4 HOH A 11 611 611 HOH HOH . 
G 4 HOH A 12 612 612 HOH HOH . 
G 4 HOH A 13 613 613 HOH HOH . 
G 4 HOH A 14 614 614 HOH HOH . 
G 4 HOH A 15 615 615 HOH HOH . 
G 4 HOH A 16 616 616 HOH HOH . 
G 4 HOH A 17 617 617 HOH HOH . 
G 4 HOH A 18 618 618 HOH HOH . 
G 4 HOH A 19 619 619 HOH HOH . 
G 4 HOH A 20 620 620 HOH HOH . 
G 4 HOH A 21 621 621 HOH HOH . 
G 4 HOH A 22 622 622 HOH HOH . 
G 4 HOH A 23 623 623 HOH HOH . 
G 4 HOH A 24 624 624 HOH HOH . 
G 4 HOH A 25 625 625 HOH HOH . 
G 4 HOH A 26 626 626 HOH HOH . 
G 4 HOH A 27 627 627 HOH HOH . 
G 4 HOH A 28 628 727 HOH HOH . 
G 4 HOH A 29 629 628 HOH HOH . 
G 4 HOH A 30 630 629 HOH HOH . 
G 4 HOH A 31 631 630 HOH HOH . 
G 4 HOH A 32 632 631 HOH HOH . 
G 4 HOH A 33 633 632 HOH HOH . 
G 4 HOH A 34 634 633 HOH HOH . 
G 4 HOH A 35 635 634 HOH HOH . 
G 4 HOH A 36 636 635 HOH HOH . 
G 4 HOH A 37 637 636 HOH HOH . 
G 4 HOH A 38 638 637 HOH HOH . 
G 4 HOH A 39 639 638 HOH HOH . 
G 4 HOH A 40 640 639 HOH HOH . 
G 4 HOH A 41 641 640 HOH HOH . 
G 4 HOH A 42 642 641 HOH HOH . 
G 4 HOH A 43 643 642 HOH HOH . 
G 4 HOH A 44 644 643 HOH HOH . 
G 4 HOH A 45 645 644 HOH HOH . 
G 4 HOH A 46 646 645 HOH HOH . 
G 4 HOH A 47 647 646 HOH HOH . 
G 4 HOH A 48 648 647 HOH HOH . 
G 4 HOH A 49 649 648 HOH HOH . 
G 4 HOH A 50 650 649 HOH HOH . 
G 4 HOH A 51 651 650 HOH HOH . 
G 4 HOH A 52 652 651 HOH HOH . 
G 4 HOH A 53 653 652 HOH HOH . 
G 4 HOH A 54 654 653 HOH HOH . 
G 4 HOH A 55 655 654 HOH HOH . 
G 4 HOH A 56 656 655 HOH HOH . 
G 4 HOH A 57 657 656 HOH HOH . 
G 4 HOH A 58 658 657 HOH HOH . 
G 4 HOH A 59 659 658 HOH HOH . 
G 4 HOH A 60 660 659 HOH HOH . 
G 4 HOH A 61 661 660 HOH HOH . 
G 4 HOH A 62 662 661 HOH HOH . 
G 4 HOH A 63 663 662 HOH HOH . 
G 4 HOH A 64 664 663 HOH HOH . 
G 4 HOH A 65 665 664 HOH HOH . 
G 4 HOH A 66 666 665 HOH HOH . 
G 4 HOH A 67 667 666 HOH HOH . 
G 4 HOH A 68 668 667 HOH HOH . 
G 4 HOH A 69 669 668 HOH HOH . 
G 4 HOH A 70 670 669 HOH HOH . 
G 4 HOH A 71 671 670 HOH HOH . 
G 4 HOH A 72 672 671 HOH HOH . 
G 4 HOH A 73 673 672 HOH HOH . 
G 4 HOH A 74 674 673 HOH HOH . 
G 4 HOH A 75 675 674 HOH HOH . 
G 4 HOH A 76 676 675 HOH HOH . 
G 4 HOH A 77 677 676 HOH HOH . 
G 4 HOH A 78 678 677 HOH HOH . 
G 4 HOH A 79 679 678 HOH HOH . 
G 4 HOH A 80 680 679 HOH HOH . 
G 4 HOH A 81 681 680 HOH HOH . 
G 4 HOH A 82 682 681 HOH HOH . 
G 4 HOH A 83 683 682 HOH HOH . 
G 4 HOH A 84 684 683 HOH HOH . 
G 4 HOH A 85 685 684 HOH HOH . 
G 4 HOH A 86 686 685 HOH HOH . 
G 4 HOH A 87 687 686 HOH HOH . 
G 4 HOH A 88 688 687 HOH HOH . 
G 4 HOH A 89 689 688 HOH HOH . 
G 4 HOH A 90 690 689 HOH HOH . 
G 4 HOH A 91 691 690 HOH HOH . 
G 4 HOH A 92 692 726 HOH HOH . 
G 4 HOH A 93 693 691 HOH HOH . 
G 4 HOH A 94 694 692 HOH HOH . 
G 4 HOH A 95 695 693 HOH HOH . 
G 4 HOH A 96 696 694 HOH HOH . 
G 4 HOH A 97 697 695 HOH HOH . 
G 4 HOH A 98 698 696 HOH HOH . 
G 4 HOH A 99 699 697 HOH HOH . 
G 4 HOH A 100 700 698 HOH HOH . 
G 4 HOH A 101 701 699 HOH HOH . 
G 4 HOH A 102 702 700 HOH HOH . 
G 4 HOH A 103 703 701 HOH HOH . 
G 4 HOH A 104 704 702 HOH HOH . 
G 4 HOH A 105 705 703 HOH HOH . 
G 4 HOH A 106 706 704 HOH HOH . 
G 4 HOH A 107 707 705 HOH HOH . 
G 4 HOH A 108 708 706 HOH HOH . 
G 4 HOH A 109 709 707 HOH HOH . 
G 4 HOH A 110 710 708 HOH HOH . 
G 4 HOH A 111 711 709 HOH HOH . 
G 4 HOH A 112 712 710 HOH HOH . 
G 4 HOH A 113 713 711 HOH HOH . 
G 4 HOH A 114 714 712 HOH HOH . 
G 4 HOH A 115 715 713 HOH HOH . 
G 4 HOH A 116 716 714 HOH HOH . 
G 4 HOH A 117 717 715 HOH HOH . 
G 4 HOH A 118 718 716 HOH HOH . 
G 4 HOH A 119 719 717 HOH HOH . 
G 4 HOH A 120 720 718 HOH HOH . 
G 4 HOH A 121 721 719 HOH HOH . 
G 4 HOH A 122 722 720 HOH HOH . 
G 4 HOH A 123 723 721 HOH HOH . 
G 4 HOH A 124 724 722 HOH HOH . 
G 4 HOH A 125 725 723 HOH HOH . 
G 4 HOH A 126 726 724 HOH HOH . 
G 4 HOH A 127 727 725 HOH HOH . 
H 4 HOH B 1 601 601 HOH HOH . 
H 4 HOH B 2 602 602 HOH HOH . 
H 4 HOH B 3 603 603 HOH HOH . 
H 4 HOH B 4 604 604 HOH HOH . 
H 4 HOH B 5 605 605 HOH HOH . 
H 4 HOH B 6 606 606 HOH HOH . 
H 4 HOH B 7 607 607 HOH HOH . 
H 4 HOH B 8 608 608 HOH HOH . 
H 4 HOH B 9 609 609 HOH HOH . 
H 4 HOH B 10 610 610 HOH HOH . 
H 4 HOH B 11 611 611 HOH HOH . 
H 4 HOH B 12 612 612 HOH HOH . 
H 4 HOH B 13 613 613 HOH HOH . 
H 4 HOH B 14 614 614 HOH HOH . 
H 4 HOH B 15 615 615 HOH HOH . 
H 4 HOH B 16 616 616 HOH HOH . 
H 4 HOH B 17 617 617 HOH HOH . 
H 4 HOH B 18 618 618 HOH HOH . 
H 4 HOH B 19 619 619 HOH HOH . 
H 4 HOH B 20 620 620 HOH HOH . 
H 4 HOH B 21 621 621 HOH HOH . 
H 4 HOH B 22 622 622 HOH HOH . 
H 4 HOH B 23 623 623 HOH HOH . 
H 4 HOH B 24 624 624 HOH HOH . 
H 4 HOH B 25 625 625 HOH HOH . 
H 4 HOH B 26 626 626 HOH HOH . 
H 4 HOH B 27 627 627 HOH HOH . 
H 4 HOH B 28 628 628 HOH HOH . 
H 4 HOH B 29 629 629 HOH HOH . 
H 4 HOH B 30 630 630 HOH HOH . 
H 4 HOH B 31 631 631 HOH HOH . 
H 4 HOH B 32 632 632 HOH HOH . 
H 4 HOH B 33 633 633 HOH HOH . 
H 4 HOH B 34 634 634 HOH HOH . 
H 4 HOH B 35 635 635 HOH HOH . 
H 4 HOH B 36 636 636 HOH HOH . 
H 4 HOH B 37 637 637 HOH HOH . 
H 4 HOH B 38 638 638 HOH HOH . 
H 4 HOH B 39 639 639 HOH HOH . 
H 4 HOH B 40 640 640 HOH HOH . 
H 4 HOH B 41 641 641 HOH HOH . 
H 4 HOH B 42 642 642 HOH HOH . 
H 4 HOH B 43 643 643 HOH HOH . 
H 4 HOH B 44 644 644 HOH HOH . 
H 4 HOH B 45 645 645 HOH HOH . 
H 4 HOH B 46 646 646 HOH HOH . 
H 4 HOH B 47 647 647 HOH HOH . 
H 4 HOH B 48 648 648 HOH HOH . 
H 4 HOH B 49 649 649 HOH HOH . 
H 4 HOH B 50 650 650 HOH HOH . 
H 4 HOH B 51 651 651 HOH HOH . 
H 4 HOH B 52 652 652 HOH HOH . 
H 4 HOH B 53 653 653 HOH HOH . 
H 4 HOH B 54 654 654 HOH HOH . 
H 4 HOH B 55 655 655 HOH HOH . 
H 4 HOH B 56 656 656 HOH HOH . 
H 4 HOH B 57 657 657 HOH HOH . 
H 4 HOH B 58 658 658 HOH HOH . 
H 4 HOH B 59 659 659 HOH HOH . 
H 4 HOH B 60 660 660 HOH HOH . 
H 4 HOH B 61 661 661 HOH HOH . 
H 4 HOH B 62 662 662 HOH HOH . 
H 4 HOH B 63 663 663 HOH HOH . 
H 4 HOH B 64 664 664 HOH HOH . 
H 4 HOH B 65 665 665 HOH HOH . 
H 4 HOH B 66 666 666 HOH HOH . 
H 4 HOH B 67 667 667 HOH HOH . 
H 4 HOH B 68 668 668 HOH HOH . 
H 4 HOH B 69 669 669 HOH HOH . 
H 4 HOH B 70 670 670 HOH HOH . 
H 4 HOH B 71 671 671 HOH HOH . 
H 4 HOH B 72 672 672 HOH HOH . 
H 4 HOH B 73 673 673 HOH HOH . 
H 4 HOH B 74 674 674 HOH HOH . 
H 4 HOH B 75 675 675 HOH HOH . 
H 4 HOH B 76 676 676 HOH HOH . 
H 4 HOH B 77 677 677 HOH HOH . 
H 4 HOH B 78 678 678 HOH HOH . 
H 4 HOH B 79 679 679 HOH HOH . 
H 4 HOH B 80 680 680 HOH HOH . 
H 4 HOH B 81 681 681 HOH HOH . 
H 4 HOH B 82 682 682 HOH HOH . 
H 4 HOH B 83 683 683 HOH HOH . 
H 4 HOH B 84 684 684 HOH HOH . 
H 4 HOH B 85 685 685 HOH HOH . 
H 4 HOH B 86 686 686 HOH HOH . 
H 4 HOH B 87 687 687 HOH HOH . 
H 4 HOH B 88 688 688 HOH HOH . 
H 4 HOH B 89 689 689 HOH HOH . 
H 4 HOH B 90 690 690 HOH HOH . 
H 4 HOH B 91 691 691 HOH HOH . 
H 4 HOH B 92 692 692 HOH HOH . 
H 4 HOH B 93 693 693 HOH HOH . 
H 4 HOH B 94 694 694 HOH HOH . 
H 4 HOH B 95 695 695 HOH HOH . 
H 4 HOH B 96 696 696 HOH HOH . 
H 4 HOH B 97 697 697 HOH HOH . 
H 4 HOH B 98 698 698 HOH HOH . 
H 4 HOH B 99 699 699 HOH HOH . 
H 4 HOH B 100 700 700 HOH HOH . 
H 4 HOH B 101 701 701 HOH HOH . 
H 4 HOH B 102 702 702 HOH HOH . 
H 4 HOH B 103 703 703 HOH HOH . 
H 4 HOH B 104 704 704 HOH HOH . 
H 4 HOH B 105 705 705 HOH HOH . 
H 4 HOH B 106 706 706 HOH HOH . 
H 4 HOH B 107 707 707 HOH HOH . 
H 4 HOH B 108 708 708 HOH HOH . 
H 4 HOH B 109 709 709 HOH HOH . 
H 4 HOH B 110 710 710 HOH HOH . 
H 4 HOH B 111 711 711 HOH HOH . 
H 4 HOH B 112 712 712 HOH HOH . 
H 4 HOH B 113 713 713 HOH HOH . 
H 4 HOH B 114 714 714 HOH HOH . 
H 4 HOH B 115 715 715 HOH HOH . 
H 4 HOH B 116 716 716 HOH HOH . 
H 4 HOH B 117 717 717 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 KNA . . . D 3 10.21 63.191 9.464 1 75.72 ? C1 KNA 502 A 1 
HETATM 2 O O1 KNA . . . D 3 9.598 64.277 9.626 1 69.77 ? O1 KNA 502 A 1 
HETATM 3 C C2 KNA . . . D 3 9.54 61.843 9.56 1 63.06 ? C2 KNA 502 A 1 
HETATM 4 O O2 KNA . . . D 3 11.416 63.187 9.235 1 60.48 ? O2 KNA 502 A 1 
HETATM 5 C C3 KNA . . . D 3 8.214 61.996 10.26 1 51.29 ? C3 KNA 502 A 1 
HETATM 6 C C4 KNA . . . D 3 8.228 61.279 11.581 1 54.53 ? C4 KNA 502 A 1 
HETATM 7 C C5 KNA . . . D 3 8.57 59.828 11.361 1 51.35 ? C5 KNA 502 A 1 
HETATM 8 C C6 KNA . . . D 3 7.863 58.988 12.403 1 52.34 ? C6 KNA 502 A 1 
HETATM 9 C C7 KNA . . . D 3 8.929 58.251 13.18 1 44.03 ? C7 KNA 502 A 1 
HETATM 10 C C8 KNA . . . D 3 9.97 57.755 12.202 1 46.71 ? C8 KNA 502 A 1 
HETATM 11 C C9 KNA . . . D 3 11.352 58.136 12.674 1 39.38 ? C9 KNA 502 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#